Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002244.1

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Forward (+)

172773 .. 176387

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002244.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggattggttgaacgggcttgaacctgacatgtcggtgaaggtcctaacttgtttggacaatccaaaggatcttgttcaaattagtactgtctcatgcacttggcgtcaaattgtggtagaaaatggtctgtgtaagaagctttgcttgagaatgtttcctcagttatccagagttggtcatgtgatcgagtcaaacaactctgatgccaaagattacgcagaagttggatctagcaattcaaaggaatgggacacgttggaaagggagcatagagtctatgccttcttagctcatgcttgtacatctttccctgagggggattgcatttcaaaggcaatcagtgcttccagcactgacaattatccagaggaaagcattcaacatactctagtgtttagtgttgcgcggagagcttcatactggtcaagtaaaggccaaaagaaccctgcagtgcctgagatgctgacatacaagttgaagtctgattttgttataattactgaaatcaacatacatcctttcaaagcttacttccagcatgggtcacccatatattctgcccgtggtgttcgatttcgtatggggcatgccaaattccctattgtagagagtgaccccatggaggaatcatgccatgacgacaagtttgagtggactcacacttcgcaagtgttcccaatggctcaggaaaactgcttgcagacattcaagcttccagaaccagttctttgcataggtggattcttgcagattgagttagtggggagggttcagagacaagaaatggatgacctgttctatatatgcgtgtctcacgttcaagtcaaggggaagtcactaggacctgcatttagtgttgaaaccaatgtaccatctgggctgtttgtgttgaagagacaaactaagttcaaccaaccaagcttacctgagaatgagtccgatgctatctccactggtgatttggagagacacggtagagaaatgctgcccattgtgaatgtgctgcgtgcaaatgtagattttgaggaatattatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

347

Amino Acids

39.39

Weight (kDa)

5.53

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	856
AccII	CGCG	1 cut(s)	409
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	78, 238
AcsI	RAATTY	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	3 cut(s)	88, 304, 873
AfiI	CCNNNNNNNGG	2 cut(s)	319, 625
AflIII	ACRYGT	2 cut(s)	30, 255
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
AluBI	AGCT	6 cut(s)	142, 293, 416, 530, 715, 924
AluI	AGCT	6 cut(s)	142, 293, 416, 530, 715, 924
Alw26I	GTCTC	5 cut(s)	97, 772, 819, 892, 964
AlwI	GGATC	2 cut(s)	78, 238
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	988, 1006
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	4 cut(s)	632, 649, 664, 681
Asp700I	GAANNNNTTC	2 cut(s)	378, 726
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	43, 845
AsuHPI	GGTGA	3 cut(s)	49, 540, 971
AvaII	GGWCC	2 cut(s)	43, 845
AxyI	CCTNAGG	1 cut(s)	315
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BbvI	GCAGC	2 cut(s)	975, 993
BccI	CCATC	1 cut(s)	883
BcoDI	GTCTC	5 cut(s)	97, 772, 819, 892, 964
BfaI	CTAG	3 cut(s)	234, 392, 842
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	856
BisI	GCNGC	2 cut(s)	989, 1007
BlsI	GCNGC	2 cut(s)	990, 1008
BmcAI	AGTACT	1 cut(s)	88
Bme18I	GGWCC	2 cut(s)	43, 845
BmgT120I	GGNCC	2 cut(s)	43, 845
BmsI	GCATC	3 cut(s)	196, 453, 934
Bpu10I	CCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	565, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 625
Bse1I	ACTGG	3 cut(s)	428, 725, 961
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	565, 621
BseGI	GGATG	2 cut(s)	517, 796
BseLI	CCNNNNNNNGG	2 cut(s)	319, 625
BseMII	CTCAG	5 cut(s)	176, 306, 450, 701, 921
BseNI	ACTGG	3 cut(s)	428, 725, 961
BseXI	GCAGC	2 cut(s)	975, 993
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	319, 625
BsmAI	GTCTC	5 cut(s)	97, 772, 819, 892, 964
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	438
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	70, 186, 230
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	5 cut(s)	175, 307, 451, 700, 922
BspFNI	CGCG	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	2 cut(s)	78, 238
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	428, 725, 961
BssECI	CCNNGG	2 cut(s)	565, 621
BssMI	GATC	3 cut(s)	70, 186, 230
BssNI	GRCGYC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	91, 977
Bst6I	CTCTTC	1 cut(s)	890
BstACI	GRCGYC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	591, 701, 1011
BstDEI	CTNAG	7 cut(s)	162, 289, 315, 459, 687, 906, 930
BstDSI	CCRYGG	2 cut(s)	565, 621
BstEII	GGTNACC	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	517, 796
BstFNI	CGCG	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	73, 189, 233
BstMAI	GTCTC	5 cut(s)	97, 772, 819, 892, 964
BstMBI	GATC	3 cut(s)	70, 186, 230
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 344, 413, 463
BstNSI	RCATGY	2 cut(s)	34, 593
BstPI	GGTNACC	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	975, 993
BstX2I	RGATCY	2 cut(s)	70, 230
BstYI	RGATCY	2 cut(s)	70, 230
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	438
BtgI	CCRYGG	2 cut(s)	565, 621
BtsCI	GGATG	2 cut(s)	517, 796
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	4 cut(s)	349, 354, 459, 954
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	3 cut(s)	591, 701, 1011
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	43, 845
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	87, 303, 872
CviAII	CATG	9 cut(s)	31, 96, 182, 296, 542, 590, 622, 633, 638
CviQI	GTAC	3 cut(s)	87, 303, 872
DdeI	CTNAG	7 cut(s)	162, 289, 315, 459, 687, 906, 930
DpnI	GATC	3 cut(s)	72, 188, 232
DpnII	GATC	3 cut(s)	70, 186, 230
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	43, 845
Eco81I	CCTNAGG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	546
EcoO109I	RGGNCCY	2 cut(s)	43, 845
EcoO65I	GGTNACC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	9 cut(s)	34, 99, 185, 299, 545, 593, 625, 636, 641
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	9 cut(s)	30, 95, 181, 295, 541, 589, 621, 632, 637
Fnu4HI	GCNGC	2 cut(s)	989, 1007
FokI	GGATG	2 cut(s)	504, 803
Fsp4HI	GCNGC	2 cut(s)	989, 1007
FspBI	CTAG	3 cut(s)	234, 392, 842
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	989, 1007
HaeIII	GGCC	1 cut(s)	438
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	9 cut(s)	34, 99, 185, 299, 545, 593, 625, 636, 641
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	4 cut(s)	140, 528, 713, 922
HinfI	GANTC	6 cut(s)	191, 276, 629, 658, 744, 938
HphI	GGTGA	3 cut(s)	49, 540, 971
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	4 cut(s)	205, 487, 777, 943
Hpy188III	TCNNGA	4 cut(s)	171, 368, 689, 719
Hpy8I	GTNNAC	1 cut(s)	657
HpyAV	CCTTC	2 cut(s)	34, 295
HpyCH4III	ACNGT	2 cut(s)	91, 977
HpyCH4IV	ACGT	2 cut(s)	257, 819
HpyCH4V	TGCA	8 cut(s)	99, 327, 452, 703, 735, 751, 851, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 344, 413, 463
HpyF3I	CTNAG	7 cut(s)	162, 289, 315, 459, 687, 906, 930
HpySE526I	ACGT	2 cut(s)	257, 819
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	9 cut(s)	34, 99, 185, 299, 545, 593, 625, 636, 641
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	70, 186, 230
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	975, 993
LweI	GCATC	3 cut(s)	196, 453, 934
MaeI	CTAG	3 cut(s)	234, 392, 842
MaeII	ACGT	2 cut(s)	257, 819
MaeIII	GTNAC	3 cut(s)	546, 614, 837
MalI	GATC	3 cut(s)	72, 188, 232
MboI	GATC	3 cut(s)	70, 186, 230
MboII	GAAGA	1 cut(s)	907
MflI	RGATCY	2 cut(s)	70, 230
MluCI	AATT	6 cut(s)	81, 111, 238, 361, 498, 596
MlyI	GAGTC	4 cut(s)	200, 285, 652, 947
MmeI	TCCRAC	2 cut(s)	208, 240
MnlI	CCTC	6 cut(s)	171, 310, 364, 619, 762, 1021
MroXI	GAANNNNTTC	2 cut(s)	378, 726
MslI	CAYNNNNRTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	290, 344, 413, 463
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	3 cut(s)	70, 186, 230
NlaIII	CATG	9 cut(s)	34, 99, 185, 299, 545, 593, 625, 636, 641
NmuCI	GTSAC	3 cut(s)	546, 614, 837
NspI	RCATGY	2 cut(s)	34, 593
PaeI	GCATGC	1 cut(s)	593
PciI	ACATGT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	378, 726
PfeI	GAWTC	2 cut(s)	629, 744
PkrI	GCNGC	2 cut(s)	990, 1008
PleI	GAGTC	4 cut(s)	199, 284, 652, 946
PpsI	GAGTC	4 cut(s)	199, 284, 652, 946
PpuMI	RGGWCCY	2 cut(s)	43, 845
PscI	ACATGT	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	497
Psp5II	RGGWCCY	2 cut(s)	43, 845
PspEI	GGTNACC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	43, 845
PspPPI	RGGWCCY	2 cut(s)	43, 845
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	70, 230
RsaI	GTAC	3 cut(s)	88, 304, 873
RsaNI	GTAC	3 cut(s)	87, 303, 872
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	2 cut(s)	989, 1007
Sau3AI	GATC	3 cut(s)	70, 186, 230
Sau96I	GGNCC	2 cut(s)	43, 845
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	4 cut(s)	200, 285, 652, 947
SfaNI	GCATC	3 cut(s)	196, 453, 934
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	43, 845
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	6 cut(s)	81, 111, 238, 361, 498, 596
SsiI	CCGC	1 cut(s)	409
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	3 cut(s)	234, 392, 842
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	91, 977
TaiI	ACGT	2 cut(s)	260, 822
TaqI	TCGA	2 cut(s)	189, 574
TasI	AATT	6 cut(s)	81, 111, 238, 361, 498, 596
TatI	WGTACW	2 cut(s)	86, 302
TfiI	GAWTC	2 cut(s)	629, 744
TscAI	CASTG	4 cut(s)	349, 361, 459, 961
TseFI	GTSAC	3 cut(s)	546, 614, 837
TseI	GCWGC	2 cut(s)	988, 1006
Tsp45I	GTSAC	3 cut(s)	546, 614, 837
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	4 cut(s)	349, 361, 459, 961
VpaK11BI	GGWCC	2 cut(s)	43, 845
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	2 cut(s)	34, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmnI	GAANNNNTTC	2 cut(s)	378, 726
XspI	CTAG	3 cut(s)	234, 392, 842
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.