Rmu_ssc0000172.1_g000012

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0005803
Physical Location & Seq
Forward (+)
50803 .. 54734
3932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000012.1.cds

Sequence Viewer

Length: 1044 bp
atggattggttgaacgggcttgaacctgacatgtcggtgaaggtcctaacttgtttggacaatccaaaggatcttgttcaaattagtactgtctcatgcacttggcgtcaaattgtggtagaaaatggtctgtgtaagaagctttgcttgagaatgtttcctcagttatccagagttggtcatgtgatcgagtcaaacaactctgatgccaaagattacgcagaagttggatctagcaattcaaaggaatgggacacgttggaaagggagcatagagtctatgccttcttagctcatgcttgtacatctttccctgagggggattgcatttcaaaggcaatcagtgcttccagcactgacaattatccagaggaaagcattcaacatactctagtgtttagtgttgcgcggagagcttcatactggtcaagtaaaggccaaaagaaccctgcagtgcctgagatgctgacatacaagttgaagtctgattttgttataattactgaaatcaacatacatcctttcaaagcttacttccagcatgggtcacccatatattctgcccgtggtgttcgatttcgtatggggcatgccaaattccctattgtagagagtgaccccatggaggaatcatgccatgacgacaagtttgagtggactcacacttcgcaagtgttcccaatggctcaggaaaactgcttgcagacattcaagcttccagaaccagttctttgcataggtggattcttgcagattgagttagtggggagggttcagagacaagaaatggatgacctgttctatatatgcgtgtctcacgttcaagtcaaggggaagtcactaggacctgcatttagtgttgaaaccaatgtaccatctgggctgtttgtgttgaagagacaaactaagttcaaccaaccaagcttacctgagaatgagtccgatgctatctccactggtgatttggagagacacggtagagaaatgctgcccattgtgaatgtgctgcgtgcaaatgtagatattgaggaatattatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

347

Amino Acids

39.35

Weight (kDa)

5.53

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 856
AccII CGCG 1 cut(s) 409
AciI CCGC 1 cut(s) 409
AclWI GGATC 2 cut(s) 78, 238
AcsI RAATTY 1 cut(s) 596
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 3 cut(s) 88, 304, 873
AfiI CCNNNNNNNGG 2 cut(s) 319, 625
AflIII ACRYGT 2 cut(s) 30, 255
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
AluBI AGCT 6 cut(s) 142, 293, 416, 530, 715, 924
AluI AGCT 6 cut(s) 142, 293, 416, 530, 715, 924
Alw26I GTCTC 5 cut(s) 97, 772, 819, 892, 964
AlwI GGATC 2 cut(s) 78, 238
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 988, 1006
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 4 cut(s) 632, 649, 664, 681
Asp700I GAANNNNTTC 2 cut(s) 378, 726
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 2 cut(s) 43, 845
AsuHPI GGTGA 3 cut(s) 49, 540, 971
AvaII GGWCC 2 cut(s) 43, 845
AxyI CCTNAGG 1 cut(s) 315
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BbvI GCAGC 2 cut(s) 975, 993
BccI CCATC 1 cut(s) 883
BcoDI GTCTC 5 cut(s) 97, 772, 819, 892, 964
BfaI CTAG 3 cut(s) 234, 392, 842
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 856
BisI GCNGC 2 cut(s) 989, 1007
BlsI GCNGC 2 cut(s) 990, 1008
BmcAI AGTACT 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 43, 845
BmgT120I GGNCC 2 cut(s) 43, 845
BmsI GCATC 3 cut(s) 196, 453, 934
Bpu10I CCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 565, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 625
Bse1I ACTGG 3 cut(s) 428, 725, 961
Bse21I CCTNAGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 565, 621
BseGI GGATG 2 cut(s) 517, 796
BseLI CCNNNNNNNGG 2 cut(s) 319, 625
BseMII CTCAG 5 cut(s) 176, 306, 450, 701, 921
BseNI ACTGG 3 cut(s) 428, 725, 961
BseXI GCAGC 2 cut(s) 975, 993
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 438
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 319, 625
BsmAI GTCTC 5 cut(s) 97, 772, 819, 892, 964
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 438
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 70, 186, 230
Bsp19I CCATGG 1 cut(s) 621
BspACI CCGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 5 cut(s) 175, 307, 451, 700, 922
BspFNI CGCG 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 2 cut(s) 78, 238
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 3 cut(s) 428, 725, 961
BssECI CCNNGG 2 cut(s) 565, 621
BssMI GATC 3 cut(s) 70, 186, 230
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 91, 977
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 591, 701, 1011
BstDEI CTNAG 7 cut(s) 162, 289, 315, 459, 687, 906, 930
BstDSI CCRYGG 2 cut(s) 565, 621
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 2 cut(s) 517, 796
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 73, 189, 233
BstMAI GTCTC 5 cut(s) 97, 772, 819, 892, 964
BstMBI GATC 3 cut(s) 70, 186, 230
BstMWI GCNNNNNNNGC 4 cut(s) 290, 344, 413, 463
BstNSI RCATGY 2 cut(s) 34, 593
BstPI GGTNACC 1 cut(s) 546
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 975, 993
BstX2I RGATCY 2 cut(s) 70, 230
BstYI RGATCY 2 cut(s) 70, 230
Bsu36I CCTNAGG 1 cut(s) 315
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 2 cut(s) 565, 621
BtsCI GGATG 2 cut(s) 517, 796
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 4 cut(s) 349, 354, 459, 954
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 591, 701, 1011
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 43, 845
CseI GACGC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 87, 303, 872
CviAII CATG 9 cut(s) 31, 96, 182, 296, 542, 590, 622, 633, 638
CviQI GTAC 3 cut(s) 87, 303, 872
DdeI CTNAG 7 cut(s) 162, 289, 315, 459, 687, 906, 930
DpnI GATC 3 cut(s) 72, 188, 232
DpnII GATC 3 cut(s) 70, 186, 230
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 43, 845
Eco81I CCTNAGG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 546
EcoO109I RGGNCCY 2 cut(s) 43, 845
EcoO65I GGTNACC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 9 cut(s) 34, 99, 185, 299, 545, 593, 625, 636, 641
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 266
FatI CATG 9 cut(s) 30, 95, 181, 295, 541, 589, 621, 632, 637
Fnu4HI GCNGC 2 cut(s) 989, 1007
FokI GGATG 2 cut(s) 504, 803
Fsp4HI GCNGC 2 cut(s) 989, 1007
FspBI CTAG 3 cut(s) 234, 392, 842
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 989, 1007
HaeIII GGCC 1 cut(s) 438
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 9 cut(s) 34, 99, 185, 299, 545, 593, 625, 636, 641
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HindIII AAGCTT 4 cut(s) 140, 528, 713, 922
HinfI GANTC 6 cut(s) 191, 276, 629, 658, 744, 938
HphI GGTGA 3 cut(s) 49, 540, 971
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 4 cut(s) 205, 487, 777, 943
Hpy188III TCNNGA 4 cut(s) 171, 368, 689, 719
Hpy8I GTNNAC 1 cut(s) 657
HpyAV CCTTC 2 cut(s) 34, 295
HpyCH4III ACNGT 2 cut(s) 91, 977
HpyCH4IV ACGT 2 cut(s) 257, 819
HpyCH4V TGCA 8 cut(s) 99, 327, 452, 703, 735, 751, 851, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 344, 413, 463
HpyF3I CTNAG 7 cut(s) 162, 289, 315, 459, 687, 906, 930
HpySE526I ACGT 2 cut(s) 257, 819
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 9 cut(s) 34, 99, 185, 299, 545, 593, 625, 636, 641
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 70, 186, 230
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 975, 993
LweI GCATC 3 cut(s) 196, 453, 934
MaeI CTAG 3 cut(s) 234, 392, 842
MaeII ACGT 2 cut(s) 257, 819
MaeIII GTNAC 3 cut(s) 546, 614, 837
MalI GATC 3 cut(s) 72, 188, 232
MboI GATC 3 cut(s) 70, 186, 230
MboII GAAGA 1 cut(s) 907
MflI RGATCY 2 cut(s) 70, 230
MluCI AATT 6 cut(s) 81, 111, 238, 361, 498, 596
MlyI GAGTC 4 cut(s) 200, 285, 652, 947
MmeI TCCRAC 2 cut(s) 208, 240
MnlI CCTC 6 cut(s) 171, 310, 364, 619, 762, 1021
MroXI GAANNNNTTC 2 cut(s) 378, 726
MslI CAYNNNNRTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 378
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 4 cut(s) 290, 344, 413, 463
NcoI CCATGG 1 cut(s) 621
NdeII GATC 3 cut(s) 70, 186, 230
NlaIII CATG 9 cut(s) 34, 99, 185, 299, 545, 593, 625, 636, 641
NmuCI GTSAC 3 cut(s) 546, 614, 837
NspI RCATGY 2 cut(s) 34, 593
PaeI GCATGC 1 cut(s) 593
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 2 cut(s) 378, 726
PfeI GAWTC 2 cut(s) 629, 744
PkrI GCNGC 2 cut(s) 990, 1008
PleI GAGTC 4 cut(s) 199, 284, 652, 946
PpsI GAGTC 4 cut(s) 199, 284, 652, 946
PpuMI RGGWCCY 2 cut(s) 43, 845
PscI ACATGT 1 cut(s) 30
PsiI TTATAA 1 cut(s) 497
Psp5II RGGWCCY 2 cut(s) 43, 845
PspEI GGTNACC 1 cut(s) 546
PspPI GGNCC 2 cut(s) 43, 845
PspPPI RGGWCCY 2 cut(s) 43, 845
PstI CTGCAG 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 70, 230
RsaI GTAC 3 cut(s) 88, 304, 873
RsaNI GTAC 3 cut(s) 87, 303, 872
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 2 cut(s) 989, 1007
Sau3AI GATC 3 cut(s) 70, 186, 230
Sau96I GGNCC 2 cut(s) 43, 845
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 4 cut(s) 200, 285, 652, 947
SfaNI GCATC 3 cut(s) 196, 453, 934
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 43, 845
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SphI GCATGC 1 cut(s) 593
Sse9I AATT 6 cut(s) 81, 111, 238, 361, 498, 596
SsiI CCGC 1 cut(s) 409
SspI AATATT 1 cut(s) 1034
SspMI CTAG 3 cut(s) 234, 392, 842
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 91, 977
TaiI ACGT 2 cut(s) 260, 822
TaqI TCGA 2 cut(s) 189, 574
TasI AATT 6 cut(s) 81, 111, 238, 361, 498, 596
TatI WGTACW 2 cut(s) 86, 302
TfiI GAWTC 2 cut(s) 629, 744
TscAI CASTG 4 cut(s) 349, 361, 459, 961
TseFI GTSAC 3 cut(s) 546, 614, 837
TseI GCWGC 2 cut(s) 988, 1006
Tsp45I GTSAC 3 cut(s) 546, 614, 837
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 4 cut(s) 349, 361, 459, 961
VpaK11BI GGWCC 2 cut(s) 43, 845
XapI RAATTY 1 cut(s) 596
XceI RCATGY 2 cut(s) 34, 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmnI GAANNNNTTC 2 cut(s) 378, 726
XspI CTAG 3 cut(s) 234, 392, 842
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.