Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Reverse (-)

33110127 .. 33114713

Gene Structure 4587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG212300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTTCCTCAGTTATCCAGAGTTGGTCATGTGATCGAGTCAAACAACTCTGATGCCAAAGATTACGCAGAAGTTGGATCTAGCAATTCAAAGGAATGGGACACGTTGGAACGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGAGGGGGATTGCATTTCAAAGGCAATCAGTGCTTCCAGCACTGACAATTATCCAGAGGAAAGCATTCAACATACTCTAGTGTTTAGTGTTTCGCGGAGAGCTTCATACTGGTCAAGTAAAGGCCAAGAGAACCCTGCAGTGCCTGAGATGCTGACATACAAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCCAAGCTGACTTCCAGCATGGGTCACCCATATATTCTGCCAGTGGTGTTCGATTTCGTATGGGGCATGCCAAATTCCCTATTGTAGAGAGTGACCCCATGGAGGAATCATGCCATGACGACAAGTTTGAGTGGACTCACGCTTCACAAGTGTTCCCAATGGCTCAGGAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCTTAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGTGTGTCTCACGTTCAAGTCAAGGGGAGATCACTAGAACCTGCATTTAGTGTTGAAACCAATGTACCATCTGGGCTGTTTGTGTTGAAGAGACAAACCGAGTTCAACCAACCAAGCTTACCTGAGAATGAGTCCAATGCTATCTATGAATGGGATGATGCCGATTATGAGACAGACGAGGAGGAGTTTGCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

283

Amino Acids

32.14

Weight (kDa)

4.7

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	703
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	256, 845
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	2 cut(s)	151, 720
AfiI	CCNNNNNNNGG	2 cut(s)	166, 472
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	9 cut(s)	90, 180, 230, 328, 559, 671, 710, 742, 760
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	5 cut(s)	140, 263, 377, 562, 771
AluI	AGCT	5 cut(s)	140, 263, 377, 562, 771
Alw26I	GTCTC	4 cut(s)	619, 666, 739, 818
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	2 cut(s)	225, 573
AsuHPI	GGTGA	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BccI	CCATC	1 cut(s)	730
BcoDI	GTCTC	4 cut(s)	619, 666, 739, 818
BfaI	CTAG	3 cut(s)	81, 239, 689
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	703
BmsI	GCATC	3 cut(s)	43, 300, 802
Bpu10I	CCTNAGC	2 cut(s)	534, 583
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 472
Bse1I	ACTGG	3 cut(s)	275, 411, 572
Bse21I	CCTNAGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	364, 643, 814
BseLI	CCNNNNNNNGG	2 cut(s)	166, 472
BseMII	CTCAG	5 cut(s)	23, 153, 297, 548, 768
BseNI	ACTGG	3 cut(s)	275, 411, 572
BseRI	GAGGAG	2 cut(s)	848, 851
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	166, 472
BsmAI	GTCTC	4 cut(s)	619, 666, 739, 818
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	33, 77, 683
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	256, 845
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	5 cut(s)	22, 154, 298, 547, 769
BspFNI	CGCG	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	275, 411, 572
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	33, 77, 683
BssT1I	CCWWGG	1 cut(s)	468
Bst6I	CTCTTC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	438, 548
BstDEI	CTNAG	7 cut(s)	9, 136, 162, 306, 534, 583, 777
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	364, 643, 814
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	36, 80, 686
BstMAI	GTCTC	4 cut(s)	619, 666, 739, 818
BstMBI	GATC	3 cut(s)	33, 77, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 191, 310
BstNSI	RCATGY	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	364, 643, 814
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	196, 201, 306, 418
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	438, 548
CaiI	CAGNNNCTG	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	150, 719
CviAII	CATG	7 cut(s)	29, 143, 389, 437, 469, 480, 485
CviJI	RGCY	8 cut(s)	140, 263, 285, 377, 533, 562, 730, 771
CviKI_1	RGCY	8 cut(s)	140, 263, 285, 377, 533, 562, 730, 771
CviQI	GTAC	2 cut(s)	150, 719
DdeI	CTNAG	7 cut(s)	9, 136, 162, 306, 534, 583, 777
DpnI	GATC	3 cut(s)	35, 79, 685
DpnII	GATC	3 cut(s)	33, 77, 683
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	7 cut(s)	32, 146, 392, 440, 472, 483, 488
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	7 cut(s)	28, 142, 388, 436, 468, 479, 484
FokI	GGATG	3 cut(s)	351, 650, 821
FspBI	CTAG	3 cut(s)	81, 239, 689
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	7 cut(s)	32, 146, 392, 440, 472, 483, 488
HindIII	AAGCTT	2 cut(s)	560, 769
HinfI	GANTC	6 cut(s)	38, 123, 476, 505, 591, 785
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	3 cut(s)	52, 334, 624
Hpy188III	TCNNGA	4 cut(s)	18, 215, 536, 566
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	104, 666
HpyCH4V	TGCA	5 cut(s)	174, 299, 550, 598, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 191, 310
HpyF3I	CTNAG	7 cut(s)	9, 136, 162, 306, 534, 583, 777
HpySE526I	ACGT	2 cut(s)	104, 666
Hsp92II	CATG	7 cut(s)	32, 146, 392, 440, 472, 483, 488
Kzo9I	GATC	3 cut(s)	33, 77, 683
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	3 cut(s)	43, 300, 802
MaeI	CTAG	3 cut(s)	81, 239, 689
MaeII	ACGT	2 cut(s)	104, 666
MaeIII	GTNAC	2 cut(s)	393, 461
MalI	GATC	3 cut(s)	35, 79, 685
MboI	GATC	3 cut(s)	33, 77, 683
MboII	GAAGA	1 cut(s)	754
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	4 cut(s)	85, 208, 345, 443
MlyI	GAGTC	4 cut(s)	47, 132, 499, 794
MmeI	TCCRAC	2 cut(s)	55, 87
MnlI	CCTC	7 cut(s)	18, 157, 211, 466, 609, 826, 829
MroXI	GAANNNNTTC	2 cut(s)	225, 573
Mva1269I	GAATGC	1 cut(s)	225
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	137, 191, 310
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	3 cut(s)	33, 77, 683
NlaIII	CATG	7 cut(s)	32, 146, 392, 440, 472, 483, 488
NmuCI	GTSAC	2 cut(s)	393, 461
NspI	RCATGY	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	225, 573
PfeI	GAWTC	2 cut(s)	476, 591
PleI	GAGTC	4 cut(s)	46, 131, 499, 793
PpsI	GAGTC	4 cut(s)	46, 131, 499, 793
PsiI	TTATAA	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	2 cut(s)	151, 720
RsaNI	GTAC	2 cut(s)	150, 719
Sau3AI	GATC	3 cut(s)	33, 77, 683
SchI	GAGTC	4 cut(s)	47, 132, 499, 794
SfaNI	GCATC	3 cut(s)	43, 300, 802
SfcI	CTRYAG	1 cut(s)	297
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	4 cut(s)	85, 208, 345, 443
SsiI	CCGC	2 cut(s)	256, 845
SspMI	CTAG	3 cut(s)	81, 239, 689
StyI	CCWWGG	1 cut(s)	468
TaiI	ACGT	2 cut(s)	107, 669
TaqI	TCGA	2 cut(s)	36, 421
TasI	AATT	4 cut(s)	85, 208, 345, 443
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	476, 591
TscAI	CASTG	4 cut(s)	196, 208, 306, 418
TseFI	GTSAC	2 cut(s)	393, 461
Tsp45I	GTSAC	2 cut(s)	393, 461
TspDTI	ATGAA	2 cut(s)	255, 816
TspRI	CASTG	4 cut(s)	196, 208, 306, 418
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	225, 573
XspI	CTAG	3 cut(s)	81, 239, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.