Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Reverse (-)

20976885 .. 20981738

Gene Structure 4854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCTTTCTTGCTTTGAGGCTCGCCGAGGCACCCGAGTTTTGTTGAAGTCTCTTGACATGGGTCTCTGTATGGATTTCTTGAACTGGCTTGAACCTGACATGTCAATACAGGTCCTAACTTGCTTGGACGATCCAACTGATCTTGTTCGCATTAGTTCTGTTTCCCGATCTTGGCGTCATTTTGTGATAGAAAATGGTCTTTGCAAGAAGCTGTGCTTGAGATTGTTCCCTCAGTTATCCAGAGTTGCTCAAGTGATTGAAATCAACAACCCTGACACAAAAGCAGAAGTTGGATCTAGCAATTCAAAGGAATTGGAAACCTTGGAAAGGGAGCATAGGGTCTATGCATTTTTAGCTTGTGGTTTTACATCTTTCAATGTTGGGGATTCCATTAAGAGGGCATTAAGCGCGTCCAGCACTGACAATTTTCCAGAAGAAAGCATTCGCAATACTCTAGAACCAAGAGATGTGGTGGGACGGAGAGCTTCGTACTGGTCGAGTAAAGGTCAAAGTGACCCTGCAGTGCCTGAGGTGCTGATATACAAGCTGGTGTCTGATTTTGTTGTAATTAATGAAATCAACATACAGCCTTTCAAAGCTTATTTCCAGCTCGGTGAACCCATATATTCAGCCAAGGCTGTGCGTTTCCGATTTGGGCATGCCAAGTCCCCCATGGATGTAGAGAGTGATCCAATGGGTGAATCATTTCCTGACAAGAAGTTTATATGGACCTACACTTCACAAGTGTTCCCAATGACTCAGGAAAATATCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTTTTGCAGATTGAGCTTCTGGGTAGAGTTCAGAGACAAGAAATGGATGGCTTGTTTTATATATGCGTGTCTCATGTTCAAGCTAAGGGGAAGTCGTTATCACCCGCATTTGGTGTTGAAATTCATGAACCATCTGGGCAGTTTGTGTTGAAGAACAACATTCAAGCCAAGGGCAACACCCAACCGAGCTTACCTGACAATGACTCCGATGTAAATGCGGATTTGGACTTGGAGAGGGATATAAGAGACATGCTGCCATTTGTAAATATGTTGCAAGGAAATGGAGTGGATTTTGATGAATTTGAATGGAATGACGTGGAAGAGGGAATGGATGAAGAGTTCGTGGAAGAGGGAATGGATGAAGAGTTCGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

398

Amino Acids

45.02

Weight (kDa)

4.67

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	410
AciI	CCGC	2 cut(s)	921, 1034
AclWI	GGATC	3 cut(s)	125, 301, 683
AcsI	RAATTY	2 cut(s)	936, 1115
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	171, 327, 396, 926
AflIII	ACRYGT	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	1132
AloI	GAACNNNNNNTCC	3 cut(s)	1139, 1166, 1171
Alw26I	GTCTC	5 cut(s)	54, 68, 844, 891, 1056
AlwI	GGATC	3 cut(s)	125, 301, 683
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	1069
ApoI	RAATTY	2 cut(s)	936, 1115
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	3 cut(s)	441, 705, 798
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	2 cut(s)	112, 729
AsuHPI	GGTGA	3 cut(s)	626, 710, 909
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	2 cut(s)	112, 729
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	1056
BccI	CCATC	2 cut(s)	857, 955
BcgI	CGANNNNNNTGC	2 cut(s)	1013, 1047
BcoDI	GTCTC	5 cut(s)	54, 68, 844, 891, 1056
BfaI	CTAG	2 cut(s)	297, 455
BfmI	CTRYAG	1 cut(s)	519
BisI	GCNGC	1 cut(s)	1070
BlsI	GCNGC	1 cut(s)	1071
Bme18I	GGWCC	2 cut(s)	112, 729
BmeT110I	CYCGRG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	1132
BmgT120I	GGNCC	2 cut(s)	112, 729
BmiI	GGNNCC	1 cut(s)	31
BoxI	GACNNNNGTC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	234, 238
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	5 cut(s)	25, 321, 633, 672, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	1004, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 327, 396, 926
Bse1I	ACTGG	3 cut(s)	89, 497, 797
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	5 cut(s)	25, 321, 633, 672, 984
BseGI	GGATG	4 cut(s)	682, 868, 1153, 1180
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	4 cut(s)	171, 327, 396, 926
BseMII	CTCAG	3 cut(s)	245, 519, 773
BseNI	ACTGG	3 cut(s)	89, 497, 797
BseXI	GCAGC	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	489, 652
BslI	CCNNNNNNNGG	4 cut(s)	171, 327, 396, 926
BsmAI	GTCTC	5 cut(s)	54, 68, 844, 891, 1056
BsmFI	GGGAC	2 cut(s)	489, 652
BsmI	GAATGC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	5 cut(s)	130, 139, 167, 293, 688
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	2 cut(s)	921, 1034
BspCNI	CTCAG	3 cut(s)	244, 520, 772
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	940
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	3 cut(s)	125, 301, 683
BspT107I	GGYRCC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	3 cut(s)	89, 497, 797
BssECI	CCNNGG	5 cut(s)	25, 321, 633, 672, 984
BssMI	GATC	5 cut(s)	130, 139, 167, 293, 688
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	4 cut(s)	321, 633, 672, 984
Bst6I	CTCTTC	4 cut(s)	1131, 1146, 1158, 1173
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	22, 660
BstDEI	CTNAG	4 cut(s)	231, 528, 759, 900
BstDSI	CCRYGG	1 cut(s)	672
BstENI	CCTNNNNNAGG	1 cut(s)	325
BstF5I	GGATG	4 cut(s)	682, 868, 1153, 1180
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	5 cut(s)	133, 142, 170, 296, 691
BstMAI	GTCTC	5 cut(s)	54, 68, 844, 891, 1056
BstMBI	GATC	5 cut(s)	130, 139, 167, 293, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 407, 414, 532, 829
BstNSI	RCATGY	3 cut(s)	103, 662, 1069
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	672
BtrI	CACGTC	1 cut(s)	1132
BtsCI	GGATG	4 cut(s)	682, 868, 1153, 1180
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	417, 528
Cac8I	GCNNGC	2 cut(s)	22, 660
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	940
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	112, 729
CseI	GACGC	2 cut(s)	164, 399
Csp6I	GTAC	1 cut(s)	490
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	7 cut(s)	58, 100, 659, 673, 890, 941, 1066
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	4 cut(s)	231, 528, 759, 900
DpnI	GATC	5 cut(s)	132, 141, 169, 295, 690
DpnII	GATC	5 cut(s)	130, 139, 167, 293, 688
Eam1104I	CTCTTC	4 cut(s)	1131, 1146, 1158, 1173
EarI	CTCTTC	4 cut(s)	1131, 1146, 1158, 1173
Eco130I	CCWWGG	4 cut(s)	321, 633, 672, 984
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	112, 729
Eco81I	CCTNAGG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	4 cut(s)	321, 633, 672, 984
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	4 cut(s)	321, 633, 672, 984
FaeI	CATG	7 cut(s)	61, 103, 662, 676, 893, 944, 1069
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	2 cut(s)	489, 652
FatI	CATG	7 cut(s)	57, 99, 658, 672, 889, 940, 1065
FauI	CCCGC	1 cut(s)	928
Fnu4HI	GCNGC	1 cut(s)	1070
FokI	GGATG	4 cut(s)	689, 875, 1160, 1187
Fsp4HI	GCNGC	1 cut(s)	1070
FspBI	CTAG	2 cut(s)	297, 455
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	1 cut(s)	1070
HgaI	GACGC	2 cut(s)	164, 399
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	7 cut(s)	61, 103, 662, 676, 893, 944, 1069
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	2 cut(s)	597, 785
HinfI	GANTC	4 cut(s)	386, 701, 757, 1019
HphI	GGTGA	3 cut(s)	626, 710, 909
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	4 cut(s)	556, 650, 849, 1024
Hpy8I	GTNNAC	1 cut(s)	617
HpyCH4IV	ACGT	1 cut(s)	1131
HpyCH4V	TGCA	7 cut(s)	204, 347, 521, 775, 807, 823, 1090
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 407, 414, 532, 829
HpyF3I	CTNAG	4 cut(s)	231, 528, 759, 900
HpySE526I	ACGT	1 cut(s)	1131
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	7 cut(s)	61, 103, 662, 676, 893, 944, 1069
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	130, 139, 167, 293, 688
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	297, 455
MaeII	ACGT	1 cut(s)	1131
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	5 cut(s)	132, 141, 169, 295, 690
MboI	GATC	5 cut(s)	130, 139, 167, 293, 688
MboII	GAAGA	6 cut(s)	446, 979, 1148, 1163, 1175, 1190
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	6 cut(s)	301, 311, 424, 567, 936, 1115
MlyI	GAGTC	2 cut(s)	751, 1013
MmeI	TCCRAC	2 cut(s)	158, 271
MnlI	CCTC	8 cut(s)	10, 20, 240, 390, 523, 1044, 1132, 1159
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	3 cut(s)	441, 705, 798
MseI	TTAA	4 cut(s)	393, 404, 570, 1192
Mva1269I	GAATGC	1 cut(s)	441
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	5 cut(s)	353, 407, 414, 532, 829
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	5 cut(s)	130, 139, 167, 293, 688
NlaIII	CATG	7 cut(s)	61, 103, 662, 676, 893, 944, 1069
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	3 cut(s)	103, 662, 1069
PaeI	GCATGC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	940
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	441
PdmI	GAANNNNTTC	3 cut(s)	441, 705, 798
PfeI	GAWTC	2 cut(s)	386, 701
PkrI	GCNGC	1 cut(s)	1071
PleI	GAGTC	2 cut(s)	751, 1013
PpsI	GAGTC	2 cut(s)	751, 1013
PpuMI	RGGWCCY	1 cut(s)	112
PscI	ACATGT	1 cut(s)	99
PshAI	GACNNNNGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	112, 729
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SaqAI	TTAA	4 cut(s)	393, 404, 570, 1192
SatI	GCNGC	1 cut(s)	1070
Sau3AI	GATC	5 cut(s)	130, 139, 167, 293, 688
Sau96I	GGNCC	2 cut(s)	112, 729
SchI	GAGTC	2 cut(s)	751, 1013
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	112, 729
SmlI	CTYRAG	2 cut(s)	217, 249
SmoI	CTYRAG	2 cut(s)	217, 249
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	6 cut(s)	301, 311, 424, 567, 936, 1115
SsiI	CCGC	2 cut(s)	921, 1034
SspMI	CTAG	2 cut(s)	297, 455
StyI	CCWWGG	4 cut(s)	321, 633, 672, 984
TaiI	ACGT	1 cut(s)	1134
TaqI	TCGA	1 cut(s)	497
TasI	AATT	6 cut(s)	301, 311, 424, 567, 936, 1115
TfiI	GAWTC	2 cut(s)	386, 701
Tru1I	TTAA	4 cut(s)	393, 404, 570, 1192
Tru9I	TTAA	4 cut(s)	393, 404, 570, 1192
TscAI	CASTG	2 cut(s)	424, 528
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	1069
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	6 cut(s)	588, 929, 957, 1128, 1164, 1191
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	2 cut(s)	424, 528
VpaK11BI	GGWCC	2 cut(s)	112, 729
VspI	ATTAAT	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	936, 1115
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	3 cut(s)	103, 662, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmnI	GAANNNNTTC	3 cut(s)	441, 705, 798
XspI	CTAG	2 cut(s)	297, 455
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.