Rh1DG238600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005803
Physical Location & Seq
Reverse (-)
45264292 .. 45267926
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG238600.1

Sequence Viewer

Length: 1056 bp
ATGGCTCCATGTATGGATTGGTTGAACGGGCTTGAACCTGACACGTCGGTGAAGGTCCTAACTTGTTTGGACAATCCAAAGGATCTTGTTCAAATTAGTGCTGTCTCACGCACTTGGCGTCAAATTGTGGTAGAAAATGGTCTGTGTAAGAAGCTTTGCTTGAGAATGTTTCCTCAGTTATCCAGAGTTGGTCATGTGATCGAGTCAAACAACTCTGATGCCAAAGATTACGCAGAAGTTGGATCTAGCAATTCAAAGGAATGGGACACGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGAGGGGGATTGCATTTCAAAGGCAATCAGTGCTTCCAGCACTGACAATTATCCAGAGGAAAGCATTCAACATACTCTAGTGTTTAGTGTTTCGCGGAGAGCTTCATACTGGTCAAGTAAAGGCCAAAAGAACCCTGCAGTGCCTGAGATGCTGACATACAAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCAAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCAGTGGTGTTCGATTTCGTATGGGGCATGCCAAATTCCCTATTGTAGAGAGTGACCCCATGGAGGAATCATGCCATGACGACAAGTTTGAGTGGACTCACACTTCACAAGTGTTCCCAATGGCTCAGGAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGCGTGTCTCACGTTCAAGTCAAGGGGAAGTCACTAGGACCTGCATTTAGTGTTGAAACCAATGTACCATCTGGGCTGTTTGTGTTGAAGAGACAAACTAAGTTCAACCAACCAAGCTTACCTGAGAATGAGTCCAATGCTATCTCCACTGGTGATTTGGAGAGACACGATAGAGAAATGCTGCCCATTGTAAATGTGCTGCGTGCAAATGTAGATTTTGAGGAATATTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

351

Amino Acids

39.78

Weight (kDa)

5.53

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 16 - 55 1.2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 868
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 421
AclWI GGATC 2 cut(s) 90, 250
AcsI RAATTY 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 2 cut(s) 316, 885
AfiI CCNNNNNNNGG 2 cut(s) 331, 637
AflIII ACRYGT 2 cut(s) 42, 267
AjiI CACGTC 1 cut(s) 45
AleI CACNNNNGTG 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 794, 826
AluBI AGCT 6 cut(s) 154, 305, 428, 542, 727, 936
AluI AGCT 6 cut(s) 154, 305, 428, 542, 727, 936
Alw26I GTCTC 5 cut(s) 109, 784, 831, 904, 976
AlwI GGATC 2 cut(s) 90, 250
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 1000, 1018
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp700I GAANNNNTTC 2 cut(s) 390, 738
AspS9I GGNCC 2 cut(s) 55, 857
AsuHPI GGTGA 3 cut(s) 61, 552, 983
AvaII GGWCC 2 cut(s) 55, 857
AxyI CCTNAGG 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BbvI GCAGC 2 cut(s) 987, 1005
BccI CCATC 1 cut(s) 895
BcoDI GTCTC 5 cut(s) 109, 784, 831, 904, 976
BfaI CTAG 3 cut(s) 246, 404, 854
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 868
BisI GCNGC 2 cut(s) 1001, 1019
BlsI GCNGC 2 cut(s) 1002, 1020
Bme18I GGWCC 2 cut(s) 55, 857
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 55, 857
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 208, 465
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 633
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 637
Bse1I ACTGG 4 cut(s) 440, 576, 737, 973
Bse21I CCTNAGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 2 cut(s) 529, 808
BseLI CCNNNNNNNGG 2 cut(s) 331, 637
BseMII CTCAG 5 cut(s) 188, 318, 462, 713, 933
BseNI ACTGG 4 cut(s) 440, 576, 737, 973
BseXI GCAGC 2 cut(s) 987, 1005
Bsh1236I CGCG 1 cut(s) 421
BshFI GGCC 1 cut(s) 450
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 331, 637
BsmAI GTCTC 5 cut(s) 109, 784, 831, 904, 976
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 1 cut(s) 450
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 3 cut(s) 82, 198, 242
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 1 cut(s) 421
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 5 cut(s) 187, 319, 463, 712, 934
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 2 cut(s) 90, 250
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 4 cut(s) 440, 576, 737, 973
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 3 cut(s) 82, 198, 242
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 633
Bst6I CTCTTC 1 cut(s) 902
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 603, 713, 1023
BstDEI CTNAG 7 cut(s) 174, 301, 327, 471, 699, 918, 942
BstDSI CCRYGG 1 cut(s) 633
BstEII GGTNACC 1 cut(s) 558
BstF5I GGATG 2 cut(s) 529, 808
BstFNI CGCG 1 cut(s) 421
BstKTI GATC 3 cut(s) 85, 201, 245
BstMAI GTCTC 5 cut(s) 109, 784, 831, 904, 976
BstMBI GATC 3 cut(s) 82, 198, 242
BstMWI GCNNNNNNNGC 3 cut(s) 302, 356, 475
BstNSI RCATGY 1 cut(s) 605
BstPI GGTNACC 1 cut(s) 558
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 987, 1005
BstX2I RGATCY 2 cut(s) 82, 242
BstYI RGATCY 2 cut(s) 82, 242
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 633
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 529, 808
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 5 cut(s) 361, 366, 471, 583, 966
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 3 cut(s) 603, 713, 1023
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 55, 857
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 315, 884
CviAII CATG 8 cut(s) 9, 194, 308, 554, 602, 634, 645, 650
CviQI GTAC 2 cut(s) 315, 884
DdeI CTNAG 7 cut(s) 174, 301, 327, 471, 699, 918, 942
DpnI GATC 3 cut(s) 84, 200, 244
DpnII GATC 3 cut(s) 82, 198, 242
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 633
Eco47I GGWCC 2 cut(s) 55, 857
Eco81I CCTNAGG 1 cut(s) 327
Eco91I GGTNACC 1 cut(s) 558
EcoO109I RGGNCCY 2 cut(s) 55, 857
EcoO65I GGTNACC 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 8 cut(s) 12, 197, 311, 557, 605, 637, 648, 653
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 278
FatI CATG 8 cut(s) 8, 193, 307, 553, 601, 633, 644, 649
Fnu4HI GCNGC 2 cut(s) 1001, 1019
FokI GGATG 2 cut(s) 516, 815
Fsp4HI GCNGC 2 cut(s) 1001, 1019
FspBI CTAG 3 cut(s) 246, 404, 854
GluI GCNGC 2 cut(s) 1001, 1019
HaeIII GGCC 1 cut(s) 450
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 8 cut(s) 12, 197, 311, 557, 605, 637, 648, 653
HindIII AAGCTT 4 cut(s) 152, 540, 725, 934
HinfI GANTC 6 cut(s) 203, 288, 641, 670, 756, 950
HphI GGTGA 3 cut(s) 61, 552, 983
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 3 cut(s) 217, 499, 789
Hpy188III TCNNGA 4 cut(s) 183, 380, 701, 731
Hpy8I GTNNAC 1 cut(s) 669
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 46, 307
HpyCH4IV ACGT 3 cut(s) 44, 269, 831
HpyCH4V TGCA 7 cut(s) 339, 464, 715, 747, 763, 863, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 356, 475
HpyF3I CTNAG 7 cut(s) 174, 301, 327, 471, 699, 918, 942
HpySE526I ACGT 3 cut(s) 44, 269, 831
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 8 cut(s) 12, 197, 311, 557, 605, 637, 648, 653
Kzo9I GATC 3 cut(s) 82, 198, 242
LmnI GCTCC 2 cut(s) 10, 280
Lsp1109I GCAGC 2 cut(s) 987, 1005
LweI GCATC 2 cut(s) 208, 465
MaeI CTAG 3 cut(s) 246, 404, 854
MaeII ACGT 3 cut(s) 44, 269, 831
MaeIII GTNAC 3 cut(s) 558, 626, 849
MalI GATC 3 cut(s) 84, 200, 244
MboI GATC 3 cut(s) 82, 198, 242
MboII GAAGA 1 cut(s) 919
MflI RGATCY 2 cut(s) 82, 242
MluCI AATT 6 cut(s) 93, 123, 250, 373, 510, 608
MlyI GAGTC 4 cut(s) 212, 297, 664, 959
MmeI TCCRAC 2 cut(s) 220, 252
MnlI CCTC 6 cut(s) 183, 322, 376, 631, 774, 1033
MroXI GAANNNNTTC 2 cut(s) 390, 738
MslI CAYNNNNRTG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 390
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 302, 356, 475
NcoI CCATGG 1 cut(s) 633
NdeII GATC 3 cut(s) 82, 198, 242
NlaIII CATG 8 cut(s) 12, 197, 311, 557, 605, 637, 648, 653
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 558, 626, 849
NspI RCATGY 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 47
PaeI GCATGC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 390, 738
PfeI GAWTC 2 cut(s) 641, 756
PkrI GCNGC 2 cut(s) 1002, 1020
PleI GAGTC 4 cut(s) 211, 296, 664, 958
PpsI GAGTC 4 cut(s) 211, 296, 664, 958
PpuMI RGGWCCY 2 cut(s) 55, 857
PsiI TTATAA 1 cut(s) 509
Psp5II RGGWCCY 2 cut(s) 55, 857
PspEI GGTNACC 1 cut(s) 558
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 55, 857
PspPPI RGGWCCY 2 cut(s) 55, 857
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 82, 242
RsaI GTAC 2 cut(s) 316, 885
RsaNI GTAC 2 cut(s) 315, 884
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 1001, 1019
Sau3AI GATC 3 cut(s) 82, 198, 242
Sau96I GGNCC 2 cut(s) 55, 857
SchI GAGTC 4 cut(s) 212, 297, 664, 959
SfaNI GCATC 2 cut(s) 208, 465
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 2 cut(s) 55, 857
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 605
Sse9I AATT 6 cut(s) 93, 123, 250, 373, 510, 608
SsiI CCGC 1 cut(s) 421
SspI AATATT 1 cut(s) 1046
SspMI CTAG 3 cut(s) 246, 404, 854
StyI CCWWGG 1 cut(s) 633
TaiI ACGT 3 cut(s) 47, 272, 834
TaqI TCGA 2 cut(s) 201, 586
TasI AATT 6 cut(s) 93, 123, 250, 373, 510, 608
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 641, 756
TscAI CASTG 5 cut(s) 361, 373, 471, 583, 973
TseFI GTSAC 3 cut(s) 558, 626, 849
TseI GCWGC 2 cut(s) 1000, 1018
Tsp45I GTSAC 3 cut(s) 558, 626, 849
TspDTI ATGAA 1 cut(s) 420
TspRI CASTG 5 cut(s) 361, 373, 471, 583, 973
VpaK11BI GGWCC 2 cut(s) 55, 857
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 2 cut(s) 15, 973
XmnI GAANNNNTTC 2 cut(s) 390, 738
XspI CTAG 3 cut(s) 246, 404, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.