Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Reverse (-)

32847658 .. 32849360

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAAGCTGGTGATCATCAAGAGGGAGCAGAGAGCTCATCATCCTCATCATCAAAAACTAGTGGCAGTTCTAGAACTTCGTCGTCATCATCATCATCATTCACTAGCGCACTGACTCTAACCCAATTGGGGGTTGCTCATGTGCCTCAACGCTATGTTCTCCCTACTTCCCAACGACCAAGTCCTTATCCAAACCTCTCTACTATTGCTCTTCCCATACTTGACCTTTCCTCTTTGCAAAGTTCTTCTCTTAGGCCTCATGTGATCAACAATATTCAGACCGCTTGCAGGGAAATAGGGTTCTTTCAGGTTACCAACCATGGAATTCCTCTTTCGATGATGAAAGATGCCCTCAGTGCTGCAAATGAGTTCTTTAACCTACCTGTTGAGGAAAAGATGCTTCTAGGGTCTGACAATGTTCATGCACCTGTAAGATATGGGACAAGCATAAATCAAGCTGTTGATAGGGTTCACTTTTGGAGAGACTTCATCAAGCACTACTCCCATCCTATCTCAAAATGGATCCATCTTTGGCCATCAAACCCTTCTTCTTACAAGGAGAAGATGGGAAACTATGCCAAAGCTGTGCAAGTGTTACAACAGCAAATAATGGAGCTTGTTATAGAAAGCCTAGGGTTAAACCCTAATTACTTACATGAGGAAGTTGAAAATGGCTCCCAAATGATGGCTGTGAATTGCTATCCCAAATGCCCAGAGCCAGAGTTGGCACTAGGCATGCCTCCACATTCAGATTACGGCTCCATAACAATTCTCCTTCAAAGTTGTCCAGGGCTTCAGATCATGGACCAAAACAAGAACTGGATCTCAGTCCCGGACATTGAAGGAGCTCTGCTAGTTCAGATGGGTGACCAAATGGAGGTTCTGAGTAATGGCCAATACAAAAGTGTGGTTCACAGGGTGACTGTTAGTGATGAGAAGAATAGACTTTCCATTGCAAGTCTCCATAGCCTTAGTTTGGATAAGAAGATAGAGCCTGCACCTTTGCTTGTGGATAGTGAACATCCTAAGTCCTACAAAGAGTTCAGCTTTAGAGACTTCCTTAATTACATCACAAGCAATGATATTACAAAGGGGAGGTATATTGATACGCTGAAAGAGAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

375

Amino Acids

41.69

Weight (kDa)

5.95

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	71 - 181	1.1e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	226 - 321	4.5e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	685
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	3 cut(s)	517, 530, 830
AcoI	YGGCCR	2 cut(s)	533, 892
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	779
AdeI	CACNNNGTG	1 cut(s)	919
AfiI	CCNNNNNNNGG	6 cut(s)	129, 130, 288, 685, 877, 976
AgsI	TTSAA	3 cut(s)	668, 779, 842
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	7 cut(s)	8, 36, 458, 584, 616, 848, 1047
AluI	AGCT	7 cut(s)	8, 36, 458, 584, 616, 848, 1047
Alw21I	GWGCWC	2 cut(s)	38, 850
Alw26I	GTCTC	3 cut(s)	477, 965, 1047
AlwI	GGATC	3 cut(s)	517, 530, 830
AoxI	GGCC	3 cut(s)	254, 533, 892
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	805
AsuC2I	CCSGG	1 cut(s)	833
AsuHPI	GGTGA	3 cut(s)	23, 878, 931
AvaII	GGWCC	1 cut(s)	805
AvrII	CCTAGG	1 cut(s)	631
BalI	TGGCCA	2 cut(s)	535, 894
BamHI	GGATCC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	38, 850
Bbv12I	GWGCWC	2 cut(s)	38, 850
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	6 cut(s)	513, 534, 544, 559, 679, 856
BceAI	ACGGC	1 cut(s)	772
BciT130I	CCWGG	1 cut(s)	789
BclI	TGATCA	2 cut(s)	13, 264
BcnI	CCSGG	1 cut(s)	833
BcoDI	GTCTC	3 cut(s)	477, 965, 1047
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	7 cut(s)	60, 72, 105, 404, 632, 731, 854
BisI	GCNGC	1 cut(s)	360
BlnI	CCTAGG	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	789, 833
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	805
BmiI	GGNNCC	3 cut(s)	524, 676, 760
BmrFI	CCNGG	2 cut(s)	789, 833
BmsI	GCATC	2 cut(s)	337, 387
BpuMI	CCSGG	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	319, 631, 788
Bsc4I	CCNNNNNNNGG	6 cut(s)	129, 130, 288, 685, 877, 976
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	2 cut(s)	951, 1084
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	3 cut(s)	319, 631, 788
BseGI	GGATG	3 cut(s)	41, 505, 1021
BseLI	CCNNNNNNNGG	6 cut(s)	129, 130, 288, 685, 877, 976
BseMI	GCAATG	2 cut(s)	951, 1084
BseMII	CTCAG	3 cut(s)	367, 840, 875
BseNI	ACTGG	1 cut(s)	824
BseXI	GCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	981
BshFI	GGCC	3 cut(s)	256, 535, 894
BsiHKAI	GWGCWC	2 cut(s)	38, 850
BsiSI	CCGG	1 cut(s)	833
BslFI	GGGAC	2 cut(s)	454, 815
BslI	CCNNNNNNNGG	6 cut(s)	129, 130, 288, 685, 877, 976
BsmAI	GTCTC	3 cut(s)	477, 965, 1047
BsmFI	GGGAC	2 cut(s)	454, 815
BsnI	GGCC	3 cut(s)	256, 535, 894
Bsp1286I	GDGCHC	2 cut(s)	38, 850
Bsp143I	GATC	5 cut(s)	13, 264, 522, 798, 822
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	256, 535, 894
BspCNI	CTCAG	3 cut(s)	366, 839, 876
BspLI	GGNNCC	3 cut(s)	524, 676, 760
BspPI	GGATC	3 cut(s)	517, 530, 830
BspQI	GCTCTTC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	951, 1084
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	3 cut(s)	319, 631, 788
BssMI	GATC	5 cut(s)	13, 264, 522, 798, 822
BssT1I	CCWWGG	2 cut(s)	319, 631
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	286, 737, 996
BstDEI	CTNAG	6 cut(s)	251, 353, 826, 884, 971, 1026
BstDSI	CCRYGG	1 cut(s)	319
BstEII	GGTNACC	2 cut(s)	310, 866
BstF5I	GGATG	3 cut(s)	41, 505, 1021
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	16, 267, 525, 801, 825
BstMAI	GTCTC	3 cut(s)	477, 965, 1047
BstMBI	GATC	5 cut(s)	13, 264, 522, 798, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	739
BstPI	GGTNACC	2 cut(s)	310, 866
BstSCI	CCNGG	2 cut(s)	787, 831
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	2 cut(s)	522, 822
BstYI	RGATCY	2 cut(s)	522, 822
BsuRI	GGCC	3 cut(s)	256, 535, 894
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	41, 505, 1021
BtsIMutI	CAGTG	2 cut(s)	110, 361
Cac8I	GCNNGC	3 cut(s)	286, 737, 996
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	805
CviAII	CATG	7 cut(s)	140, 260, 320, 422, 656, 736, 802
DdeI	CTNAG	6 cut(s)	251, 353, 826, 884, 971, 1026
DpnI	GATC	5 cut(s)	15, 266, 524, 800, 824
DpnII	GATC	5 cut(s)	13, 264, 522, 798, 822
DraIII	CACNNNGTG	1 cut(s)	919
EaeI	YGGCCR	2 cut(s)	533, 892
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	2 cut(s)	36, 848
Eco130I	CCWWGG	2 cut(s)	319, 631
Eco147I	AGGCCT	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	38, 850
Eco47I	GGWCC	1 cut(s)	805
Eco53kI	GAGCTC	2 cut(s)	36, 848
Eco57I	CTGAAG	1 cut(s)	779
Eco91I	GGTNACC	2 cut(s)	310, 866
EcoICRI	GAGCTC	2 cut(s)	36, 848
EcoO65I	GGTNACC	2 cut(s)	310, 866
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	787
EcoT14I	CCWWGG	2 cut(s)	319, 631
EcoT38I	GRGCYC	2 cut(s)	38, 850
ErhI	CCWWGG	2 cut(s)	319, 631
FaeI	CATG	7 cut(s)	143, 263, 323, 425, 659, 739, 805
FaqI	GGGAC	2 cut(s)	454, 815
FatI	CATG	7 cut(s)	139, 259, 319, 421, 655, 735, 801
FbaI	TGATCA	2 cut(s)	13, 264
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	3 cut(s)	28, 492, 1008
FriOI	GRGCYC	2 cut(s)	38, 850
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	7 cut(s)	60, 72, 105, 404, 632, 731, 854
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	256, 535, 894
HapII	CCGG	1 cut(s)	833
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	7 cut(s)	143, 263, 323, 425, 659, 739, 805
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	115, 1120
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	3 cut(s)	23, 878, 931
Hpy166II	GTNNAC	3 cut(s)	472, 913, 1019
Hpy188I	TCNGA	6 cut(s)	279, 412, 751, 798, 861, 885
Hpy188III	TCNNGA	2 cut(s)	20, 72
Hpy8I	GTNNAC	3 cut(s)	472, 913, 1019
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	555, 785, 836
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4V	TGCA	7 cut(s)	238, 288, 362, 425, 589, 956, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	6 cut(s)	251, 353, 826, 884, 971, 1026
Hsp92II	CATG	7 cut(s)	143, 263, 323, 425, 659, 739, 805
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	2 cut(s)	13, 264
Kzo9I	GATC	5 cut(s)	13, 264, 522, 798, 822
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	5 cut(s)	26, 613, 680, 764, 845
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	337, 387
MaeI	CTAG	7 cut(s)	60, 72, 105, 404, 632, 731, 854
MaeIII	GTNAC	4 cut(s)	310, 594, 866, 919
MalI	GATC	5 cut(s)	15, 266, 524, 800, 824
MboI	GATC	5 cut(s)	13, 264, 522, 798, 822
MboII	GAAGA	6 cut(s)	203, 237, 540, 574, 949, 997
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	2 cut(s)	522, 822
MhlI	GDGCHC	2 cut(s)	38, 850
MlsI	TGGCCA	2 cut(s)	535, 894
MluCI	AATT	6 cut(s)	125, 324, 646, 694, 768, 1063
MluNI	TGGCCA	2 cut(s)	535, 894
MlyI	GAGTC	1 cut(s)	109
Mox20I	TGGCCA	2 cut(s)	535, 894
MscI	TGGCCA	2 cut(s)	535, 894
MseI	TTAA	3 cut(s)	375, 638, 1062
Msp20I	TGGCCA	2 cut(s)	535, 894
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	789, 833
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	833
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	5 cut(s)	13, 264, 522, 798, 822
NlaIII	CATG	7 cut(s)	143, 263, 323, 425, 659, 739, 805
NlaIV	GGNNCC	3 cut(s)	524, 676, 760
NmuCI	GTSAC	2 cut(s)	866, 919
NspI	RCATGY	1 cut(s)	739
PaeI	GCATGC	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	1120
PflFI	GACNNNGTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	831
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp124BI	GAGCTC	2 cut(s)	38, 850
Psp6I	CCWGG	1 cut(s)	787
PspEI	GGTNACC	2 cut(s)	310, 866
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	3 cut(s)	524, 676, 760
PspPI	GGNCC	1 cut(s)	805
PsuI	RGATCY	2 cut(s)	522, 822
PsyI	GACNNNGTC	1 cut(s)	180
SacI	GAGCTC	2 cut(s)	38, 850
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	375, 638, 1062
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	5 cut(s)	13, 264, 522, 798, 822
Sau96I	GGNCC	1 cut(s)	805
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	789, 833
SduI	GDGCHC	2 cut(s)	38, 850
SfaNI	GCATC	2 cut(s)	337, 387
SinI	GGWCC	1 cut(s)	805
SpeI	ACTAGT	1 cut(s)	59
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	6 cut(s)	125, 324, 646, 694, 768, 1063
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	7 cut(s)	60, 72, 105, 404, 632, 731, 854
SstI	GAGCTC	2 cut(s)	38, 850
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	787, 831
StyI	CCWWGG	2 cut(s)	319, 631
TaaI	ACNGT	1 cut(s)	925
TaqI	TCGA	1 cut(s)	335
TasI	AATT	6 cut(s)	125, 324, 646, 694, 768, 1063
TfiI	GAWTC	1 cut(s)	1120
Tru1I	TTAA	3 cut(s)	375, 638, 1062
Tru9I	TTAA	3 cut(s)	375, 638, 1062
TscAI	CASTG	2 cut(s)	117, 361
TseFI	GTSAC	2 cut(s)	866, 919
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	866, 919
TspDTI	ATGAA	3 cut(s)	356, 410, 478
TspRI	CASTG	2 cut(s)	117, 361
Tth111I	GACNNNGTC	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	1 cut(s)	739
XmaJI	CCTAGG	1 cut(s)	631
XspI	CTAG	7 cut(s)	60, 72, 105, 404, 632, 731, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.