Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Reverse (-)

47706240 .. 47710869

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTTCCTCAGTTATCCAGAGTTGGTCATGTGATCGAGTCAAACAACTCTGATGCCAAAGATTACGCAGAAGTTGGATCTAGCAATTCAAAGGAATGGGACATGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGAGGGGGATTGCATTTCAAAGGCAATCAGTGCTTCCAGCACTGACAATTATCCAGAGGAAAGCATTGAACATACTCTAGTGTTTAGTGTTGCGCGGAGAGCTTCATACTGGTCAAGTAAAGGCCAAAAGAACCCTGCAGTGCCTGAGATGCTGACATACAAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCAAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCCGTGGTGTTCGATTTCGTATGGGGCATGCCAAATTCCCTATTGTAGAGATTGACCCCATGGAGGAATCATGCCATGACGACAAGTTTGAGTGGACTCACACTTCTCAAGTGTTCCCAATGGCTCAGAAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGTGTGTCTCACGTTCAAGTCAAGGGGAAGTCACTAGGACCTGCATTTAGTGTTGAAACCAATGTACCATCTGGGCTGTTTGTGTTGAAGAGACAAACTAAGTTCAACCAACCAAGCTTACTTGAGAATGAGTCCAATGCTAACTCCACTGGTGATTTGGAGAGACACGATAGAGAAATGCTGCCCATTGTGAATGTGCTGCGTGCAAATGTAGATTTTGAGGAATATTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

296

Amino Acids

33.73

Weight (kDa)

5.59

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	703
AccII	CGCG	1 cut(s)	256
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	2 cut(s)	151, 720
AfiI	CCNNNNNNNGG	2 cut(s)	166, 472
AflIII	ACRYGT	1 cut(s)	102
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	5 cut(s)	140, 263, 377, 562, 771
AluI	AGCT	5 cut(s)	140, 263, 377, 562, 771
Alw26I	GTCTC	4 cut(s)	619, 666, 739, 811
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	835, 853
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	387, 818
AvaII	GGWCC	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BbvI	GCAGC	2 cut(s)	822, 840
BccI	CCATC	1 cut(s)	730
BcoDI	GTCTC	4 cut(s)	619, 666, 739, 811
BfaI	CTAG	3 cut(s)	81, 239, 689
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	2 cut(s)	836, 854
BlsI	GCNGC	2 cut(s)	837, 855
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmsI	GCATC	2 cut(s)	43, 300
BpuEI	CTTGAG	2 cut(s)	501, 797
BsaJI	CCNNGG	2 cut(s)	412, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 472
Bse1I	ACTGG	3 cut(s)	275, 572, 808
Bse21I	CCTNAGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	412, 468
BseGI	GGATG	2 cut(s)	364, 643
BseLI	CCNNNNNNNGG	2 cut(s)	166, 472
BseMII	CTCAG	4 cut(s)	23, 153, 297, 548
BseNI	ACTGG	3 cut(s)	275, 572, 808
BseXI	GCAGC	2 cut(s)	822, 840
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	166, 472
BsmAI	GTCTC	4 cut(s)	619, 666, 739, 811
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	33, 77
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	4 cut(s)	22, 154, 298, 547
BspFNI	CGCG	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	275, 572, 808
BssECI	CCNNGG	2 cut(s)	412, 468
BssMI	GATC	2 cut(s)	33, 77
BssT1I	CCWWGG	1 cut(s)	468
Bst6I	CTCTTC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	438, 548, 858
BstDEI	CTNAG	6 cut(s)	9, 136, 162, 306, 534, 753
BstDSI	CCRYGG	2 cut(s)	412, 468
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	364, 643
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	36, 80
BstMAI	GTCTC	4 cut(s)	619, 666, 739, 811
BstMBI	GATC	2 cut(s)	33, 77
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 191, 260, 310
BstNSI	RCATGY	2 cut(s)	106, 440
BstPI	GGTNACC	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	822, 840
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	412, 468
BtsCI	GGATG	2 cut(s)	364, 643
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	196, 201, 306, 801
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	438, 548, 858
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	150, 719
CviAII	CATG	8 cut(s)	29, 103, 143, 389, 437, 469, 480, 485
CviJI	RGCY	8 cut(s)	140, 263, 285, 377, 533, 562, 730, 771
CviKI_1	RGCY	8 cut(s)	140, 263, 285, 377, 533, 562, 730, 771
CviQI	GTAC	2 cut(s)	150, 719
DdeI	CTNAG	6 cut(s)	9, 136, 162, 306, 534, 753
DpnI	GATC	2 cut(s)	35, 79
DpnII	GATC	2 cut(s)	33, 77
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	692
Eco81I	CCTNAGG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	8 cut(s)	32, 106, 146, 392, 440, 472, 483, 488
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	28, 102, 142, 388, 436, 468, 479, 484
Fnu4HI	GCNGC	2 cut(s)	836, 854
FokI	GGATG	2 cut(s)	351, 650
Fsp4HI	GCNGC	2 cut(s)	836, 854
FspBI	CTAG	3 cut(s)	81, 239, 689
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	836, 854
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	8 cut(s)	32, 106, 146, 392, 440, 472, 483, 488
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	3 cut(s)	375, 560, 769
HinfI	GANTC	6 cut(s)	38, 123, 476, 505, 591, 785
HphI	GGTGA	2 cut(s)	387, 818
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	4 cut(s)	52, 334, 537, 624
Hpy188III	TCNNGA	3 cut(s)	18, 215, 566
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	7 cut(s)	174, 299, 550, 582, 598, 698, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 191, 260, 310
HpyF3I	CTNAG	6 cut(s)	9, 136, 162, 306, 534, 753
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	8 cut(s)	32, 106, 146, 392, 440, 472, 483, 488
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	33, 77
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	822, 840
LweI	GCATC	2 cut(s)	43, 300
MaeI	CTAG	3 cut(s)	81, 239, 689
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	393, 684
MalI	GATC	2 cut(s)	35, 79
MboI	GATC	2 cut(s)	33, 77
MboII	GAAGA	1 cut(s)	754
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	4 cut(s)	85, 208, 345, 443
MlyI	GAGTC	4 cut(s)	47, 132, 499, 794
MmeI	TCCRAC	2 cut(s)	55, 87
MnlI	CCTC	6 cut(s)	18, 157, 211, 466, 609, 868
MroXI	GAANNNNTTC	1 cut(s)	573
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	137, 191, 260, 310
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	33, 77
NlaIII	CATG	8 cut(s)	32, 106, 146, 392, 440, 472, 483, 488
NmuCI	GTSAC	2 cut(s)	393, 684
NspI	RCATGY	2 cut(s)	106, 440
PaeI	GCATGC	1 cut(s)	440
PciI	ACATGT	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	476, 591
PkrI	GCNGC	2 cut(s)	837, 855
PleI	GAGTC	4 cut(s)	46, 131, 499, 793
PpsI	GAGTC	4 cut(s)	46, 131, 499, 793
PpuMI	RGGWCCY	1 cut(s)	692
PscI	ACATGT	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	692
PspEI	GGTNACC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	692
PspPPI	RGGWCCY	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	2 cut(s)	151, 720
RsaNI	GTAC	2 cut(s)	150, 719
SatI	GCNGC	2 cut(s)	836, 854
Sau3AI	GATC	2 cut(s)	33, 77
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	4 cut(s)	47, 132, 499, 794
SetI	ASST	9 cut(s)	142, 265, 379, 564, 589, 645, 669, 697, 773
SfaNI	GCATC	2 cut(s)	43, 300
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	516, 776
SmoI	CTYRAG	2 cut(s)	516, 776
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	4 cut(s)	85, 208, 345, 443
SsiI	CCGC	1 cut(s)	256
SspI	AATATT	1 cut(s)	881
SspMI	CTAG	3 cut(s)	81, 239, 689
StyI	CCWWGG	1 cut(s)	468
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	2 cut(s)	36, 421
TasI	AATT	4 cut(s)	85, 208, 345, 443
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	476, 591
TscAI	CASTG	4 cut(s)	196, 208, 306, 808
TseFI	GTSAC	2 cut(s)	393, 684
TseI	GCWGC	2 cut(s)	835, 853
Tsp45I	GTSAC	2 cut(s)	393, 684
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	4 cut(s)	196, 208, 306, 808
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	2 cut(s)	106, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	3 cut(s)	81, 239, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.