RLG00000028339

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005803
Physical Location & Seq
Forward (+)
21575789 .. 21579468
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028339

Sequence Viewer

Length: 1104 bp
ATGGCTCCATCACCTCCATGTATGGATTGGTTGAACGGGCTTGAACCTGATATGTCGGTGCAGGTCCTAACTTGTTTGGACGATCCAAAGGATCTTGTTCAAATTAGTACTGTCTCACGCACTTGGCGTCAAATTGTGGTAGAAAATGGTCTGTGTAAGAAGCTTTGCTTGAGAATGTTTCCTCAGTTATCCAGAGTTGGTTATGTGATCGAGTCAAACAACCCTGATGCCAAAGAGTACACAGAAGTTGGATCTAGCAATTCAAAGGAATGGGACATGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGAGGGGGATTGCATTTCAGTGGCAATCAGTGCTTCCAGCACTGACAATTATCCAGAGGAAAGCGTTCAACATACTCTAGTGCCAGGAGATATTGTTGCGGGGAGAGCTTCATACTGGTCAAGTAAAGGCCAAAAGAACCCTGCAGTGCCTGAGATGCTGACATACAAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCGAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCAGTGGTGTTCGATTTCGTATGGGGCATGCCAAACTCCCTATTGATGTAGAGAGTGACCCCATGAAGGAATCATGCCATGACGACAAGTTTGAGTGGACTCACACTTCACAAGTGTTCCCCATGGCTCAGAAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGCGTGTCTTACGTTCAAGTCAAGGGGAAGTCACTAGGACCTGCATTTAGTGCTGAAACCAATGTACCATCTGGGCTGTTTGTGTTGAAGAGACATACCAAGTTCAACCAACCAAGCTTACCTGAGAATGAGTCCGATGCCATCTCCACTGGTGATTTGGAGAGACACGTTAGAGAAATGCTGCCCATTGTGAATGTGCTGCGTGCAAATGTAGATTTTGAGGAATATTATGAATGGGGTGATGCTGATTATGAGACAGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

368

Amino Acids

41.48

Weight (kDa)

4.92

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 58 2.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
Acc36I ACCTGC 2 cut(s) 52, 886
AciI CCGC 1 cut(s) 434
AclWI GGATC 3 cut(s) 77, 99, 259
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 4 cut(s) 109, 239, 325, 903
AfiI CCNNNNNNNGG 2 cut(s) 340, 655
AflIII ACRYGT 2 cut(s) 276, 1003
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 6 cut(s) 163, 314, 443, 557, 745, 954
AluI AGCT 6 cut(s) 163, 314, 443, 557, 745, 954
Alw26I GTCTC 5 cut(s) 118, 802, 922, 994, 1085
AlwI GGATC 3 cut(s) 77, 99, 259
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 1018, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
Asp700I GAANNNNTTC 2 cut(s) 399, 756
AspS9I GGNCC 2 cut(s) 64, 875
AsuHPI GGTGA 4 cut(s) 3, 567, 1001, 1088
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 2 cut(s) 64, 875
AxyI CCTNAGG 1 cut(s) 336
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BbvI GCAGC 2 cut(s) 1005, 1023
BccI CCATC 3 cut(s) 16, 913, 986
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 5 cut(s) 118, 802, 922, 994, 1085
BfaI CTAG 3 cut(s) 255, 413, 872
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 2 cut(s) 52, 886
BisI GCNGC 2 cut(s) 1019, 1037
BlsI GCNGC 2 cut(s) 1020, 1038
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 64, 875
BmgT120I GGNCC 2 cut(s) 64, 875
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 4 cut(s) 217, 480, 964, 1069
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 711
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 655
Bse1I ACTGG 4 cut(s) 455, 591, 755, 991
Bse21I CCTNAGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 2 cut(s) 544, 826
BseLI CCNNNNNNNGG 2 cut(s) 340, 655
BseMII CTCAG 5 cut(s) 197, 327, 477, 731, 951
BseNI ACTGG 4 cut(s) 455, 591, 755, 991
BseXI GCAGC 2 cut(s) 1005, 1023
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 465
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 340, 655
BsmAI GTCTC 5 cut(s) 118, 802, 922, 994, 1085
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 552
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 4 cut(s) 82, 91, 207, 251
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 5 cut(s) 196, 328, 478, 730, 952
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 2 cut(s) 52, 886
BspPI GGATC 3 cut(s) 77, 99, 259
BspT104I TTCGAA 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 323
BsrI ACTGG 4 cut(s) 455, 591, 755, 991
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 4 cut(s) 82, 91, 207, 251
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 920
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 2 cut(s) 365, 887
BstAUI TGTACA 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 618, 731, 1041
BstDEI CTNAG 6 cut(s) 183, 310, 336, 486, 717, 960
BstDSI CCRYGG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 573
BstF5I GGATG 2 cut(s) 544, 826
BstKTI GATC 4 cut(s) 85, 94, 210, 254
BstMAI GTCTC 5 cut(s) 118, 802, 922, 994, 1085
BstMBI GATC 4 cut(s) 82, 91, 207, 251
BstMWI GCNNNNNNNGC 5 cut(s) 311, 365, 440, 490, 887
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 280, 620
BstPI GGTNACC 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 1005, 1023
BstX2I RGATCY 2 cut(s) 91, 251
BstYI RGATCY 2 cut(s) 91, 251
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 2 cut(s) 544, 826
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 6 cut(s) 360, 370, 375, 486, 598, 984
BveI ACCTGC 2 cut(s) 52, 886
Cac8I GCNNGC 3 cut(s) 618, 731, 1041
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 2 cut(s) 64, 875
CseI GACGC 1 cut(s) 116
Csp6I GTAC 4 cut(s) 108, 238, 324, 902
CviAII CATG 9 cut(s) 18, 277, 317, 569, 617, 652, 663, 668, 712
CviQI GTAC 4 cut(s) 108, 238, 324, 902
DdeI CTNAG 6 cut(s) 183, 310, 336, 486, 717, 960
DpnI GATC 4 cut(s) 84, 93, 209, 253
DpnII GATC 4 cut(s) 82, 91, 207, 251
Eam1104I CTCTTC 1 cut(s) 920
EarI CTCTTC 1 cut(s) 920
Eco130I CCWWGG 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 64, 875
Eco81I CCTNAGG 1 cut(s) 336
Eco91I GGTNACC 1 cut(s) 573
EcoO109I RGGNCCY 2 cut(s) 64, 875
EcoO65I GGTNACC 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 9 cut(s) 21, 280, 320, 572, 620, 655, 666, 671, 715
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 287
FatI CATG 9 cut(s) 17, 276, 316, 568, 616, 651, 662, 667, 711
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 1019, 1037
FokI GGATG 2 cut(s) 531, 833
Fsp4HI GCNGC 2 cut(s) 1019, 1037
FspBI CTAG 3 cut(s) 255, 413, 872
GluI GCNGC 2 cut(s) 1019, 1037
HaeIII GGCC 1 cut(s) 465
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 9 cut(s) 21, 280, 320, 572, 620, 655, 666, 671, 715
HindIII AAGCTT 4 cut(s) 161, 555, 743, 952
HinfI GANTC 6 cut(s) 212, 297, 659, 688, 774, 968
HphI GGTGA 4 cut(s) 3, 567, 1001, 1088
Hpy166II GTNNAC 2 cut(s) 240, 687
Hpy188I TCNGA 4 cut(s) 514, 720, 807, 973
Hpy188III TCNNGA 3 cut(s) 192, 389, 749
Hpy8I GTNNAC 2 cut(s) 240, 687
HpyAV CCTTC 2 cut(s) 316, 649
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 849, 1005
HpyCH4V TGCA 8 cut(s) 61, 348, 479, 733, 765, 781, 881, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 365, 440, 490, 887
HpyF3I CTNAG 6 cut(s) 183, 310, 336, 486, 717, 960
HpySE526I ACGT 2 cut(s) 849, 1005
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 9 cut(s) 21, 280, 320, 572, 620, 655, 666, 671, 715
Kzo9I GATC 4 cut(s) 82, 91, 207, 251
LmnI GCTCC 2 cut(s) 10, 289
Lsp1109I GCAGC 2 cut(s) 1005, 1023
LweI GCATC 4 cut(s) 217, 480, 964, 1069
MaeI CTAG 3 cut(s) 255, 413, 872
MaeII ACGT 2 cut(s) 849, 1005
MaeIII GTNAC 3 cut(s) 573, 644, 867
MalI GATC 4 cut(s) 84, 93, 209, 253
MboI GATC 4 cut(s) 82, 91, 207, 251
MboII GAAGA 1 cut(s) 937
MflI RGATCY 2 cut(s) 91, 251
MluCI AATT 5 cut(s) 102, 132, 259, 382, 525
MlyI GAGTC 4 cut(s) 221, 306, 682, 977
MmeI TCCRAC 2 cut(s) 229, 261
MnlI CCTC 6 cut(s) 24, 192, 331, 385, 792, 1051
MroXI GAANNNNTTC 2 cut(s) 399, 756
MslI CAYNNNNRTG 2 cut(s) 16, 353
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 5 cut(s) 311, 365, 440, 490, 887
NcoI CCATGG 1 cut(s) 711
NdeII GATC 4 cut(s) 82, 91, 207, 251
NlaIII CATG 9 cut(s) 21, 280, 320, 572, 620, 655, 666, 671, 715
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 573, 644, 867
NspI RCATGY 2 cut(s) 280, 620
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 620
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 399, 756
PfeI GAWTC 2 cut(s) 659, 774
PkrI GCNGC 2 cut(s) 1020, 1038
PleI GAGTC 4 cut(s) 220, 305, 682, 976
PpsI GAGTC 4 cut(s) 220, 305, 682, 976
PpuMI RGGWCCY 2 cut(s) 64, 875
PscI ACATGT 1 cut(s) 276
PsiI TTATAA 1 cut(s) 524
Psp5II RGGWCCY 2 cut(s) 64, 875
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 573
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 64, 875
PspPPI RGGWCCY 2 cut(s) 64, 875
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 91, 251
RsaI GTAC 4 cut(s) 109, 239, 325, 903
RsaNI GTAC 4 cut(s) 108, 238, 324, 902
RseI CAYNNNNRTG 2 cut(s) 16, 353
SatI GCNGC 2 cut(s) 1019, 1037
Sau3AI GATC 4 cut(s) 82, 91, 207, 251
Sau96I GGNCC 2 cut(s) 64, 875
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 4 cut(s) 221, 306, 682, 977
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 4 cut(s) 217, 480, 964, 1069
SfcI CTRYAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 2 cut(s) 64, 875
SmiMI CAYNNNNRTG 2 cut(s) 16, 353
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SphI GCATGC 1 cut(s) 620
Sse9I AATT 5 cut(s) 102, 132, 259, 382, 525
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 1064
SspMI CTAG 3 cut(s) 255, 413, 872
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 852, 1008
TaqI TCGA 3 cut(s) 210, 552, 601
TasI AATT 5 cut(s) 102, 132, 259, 382, 525
TatI WGTACW 3 cut(s) 107, 237, 323
TfiI GAWTC 2 cut(s) 659, 774
TscAI CASTG 6 cut(s) 360, 370, 382, 486, 598, 991
TseFI GTSAC 3 cut(s) 573, 644, 867
TseI GCWGC 2 cut(s) 1018, 1036
Tsp45I GTSAC 3 cut(s) 573, 644, 867
TspDTI ATGAA 3 cut(s) 435, 668, 1083
TspRI CASTG 6 cut(s) 360, 370, 382, 486, 598, 991
VpaK11BI GGWCC 2 cut(s) 64, 875
XceI RCATGY 2 cut(s) 280, 620
XcmI CCANNNNNNNNNTGG 2 cut(s) 24, 991
XmnI GAANNNNTTC 2 cut(s) 399, 756
XspI CTAG 3 cut(s) 255, 413, 872
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.