Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Forward (+)

8518509 .. 8521936

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATGACAGGAGTTTACTTGTATTGGTTCCTTGTATGGATTTCTTGAACTGGCTTGAACCTGACATGTCCTTCAAGGTCCTAACTTGTTTTGACGATCAATCTGATCTTGTTCGCGTTAGTTCTGTCTCGCGCTCTTGGCGTCATTTTGTGATAGAAAATGGTCTTTGTAAAAAGCTGTGTTTGAGAATGTTCCCTCAGTTATCTAGAGTTGCTGGTGTGGTTGAGTTAAACAGCCCCGACGCACAAGAGTTTGCAGAAGTTGGATCTAGCAATTCAAAGGAATTGGAAACCTTGGAAAGGGAGCATAGGGTCTATGCTTTTTTAGCTCGTGGTTTTATATCTTTTGATGTTAGGAGTTCTATTTCCGAGGCAATCAGTGCTTCCAGCACTGACAATAATCCGGAAGAAACCATTCACAATACTCTACAACCAAGAGACATGGTGGGACGGAGAGCTTCGTATTGGTCAAGTAAAGGCCAAAGTGACCCTGCAGTGCCTGAGTTTCTGATATACAAGTTGGTGTCTGATTTGGTTGTAATTAATGAAATCAGCATACATCCTTTCCAAGCTTTTTTCCAGGCAGGTTTACCAATATATTCAACCAATGCTGTGCGATTTCGAATGGGTCATGTCAAATCCCCTGTGGTTGTAGAGTGTGATTCAAAGGGTGAATCATGTCATGAAAACAAGTTTGTATGGACCTACACTTCAGAAGTGTTCCGAATGACTCAGGAGAACCGCTTGCAGACATTTAAGTTTCCAGAACCAGTTCTTTGCATAGGTGGAATTTTACAGATTGAGCTTCTGGGTAGAGTTCAGAGACAAGAAATGGACGGATTGTTCTATATATGTGTGTGTCATGTTGAAGTCAAAGGGAAGCCATTATCGCCTGCATTTGGTGTTGAAATTCATGAACCATCTGGGGAGATTGTGTTGAAGAACGACGTGCAGGCCAAGTTGCACAACCAACCTCCCGAGAATGAGTCTGTTGTGATCTCCACTGTTAATTTGGAGAATATGGGAGATGACATGCTGCCAGTTGTGAATTTGAATGTAGAAGGGATCGAGGGGGAATATGAATGGGAGGAAGAGGAGGGATCTGATGAAGAGTATTTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

375

Amino Acids

42.43

Weight (kDa)

4.77

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AccII	CGCG	2 cut(s)	117, 133
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	3 cut(s)	274, 1073, 1108
AcsI	RAATTY	3 cut(s)	789, 909, 1048
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	300, 899
AflIII	ACRYGT	1 cut(s)	66
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	579
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	5 cut(s)	178, 329, 458, 572, 805
AluI	AGCT	5 cut(s)	178, 329, 458, 572, 805
Alw26I	GTCTC	3 cut(s)	133, 432, 817
AlwI	GGATC	3 cut(s)	274, 1073, 1108
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	977
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	2 cut(s)	478, 954
ApeKI	GCWGC	1 cut(s)	1036
ApoI	RAATTY	3 cut(s)	789, 909, 1048
AseI	ATTAAT	1 cut(s)	543
Asp700I	GAANNNNTTC	2 cut(s)	414, 771
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	79, 702
AsuHPI	GGTGA	1 cut(s)	683
AsuII	TTCGAA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	2 cut(s)	79, 702
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	1023
BccI	CCATC	1 cut(s)	928
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	3 cut(s)	133, 432, 817
BfaI	CTAG	2 cut(s)	207, 270
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	1 cut(s)	1037
BlsI	GCNGC	1 cut(s)	1038
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	2 cut(s)	79, 702
BmeT110I	CYCGRG	1 cut(s)	977
BmgBI	CACGTC	1 cut(s)	949
BmgT120I	GGNCC	2 cut(s)	79, 702
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	581
Bpu14I	TTCGAA	1 cut(s)	622
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	294, 369
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 899
Bse1I	ACTGG	3 cut(s)	56, 770, 1040
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	294, 369
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	300, 899
BseMII	CTCAG	3 cut(s)	212, 492, 746
BseNI	ACTGG	3 cut(s)	56, 770, 1040
BseRI	GAGGAG	1 cut(s)	1109
BseXI	GCAGC	1 cut(s)	1023
BsgI	GTGCAG	1 cut(s)	971
Bsh1236I	CGCG	2 cut(s)	117, 133
BshFI	GGCC	2 cut(s)	480, 956
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	300, 899
BsmAI	GTCTC	3 cut(s)	133, 432, 817
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	480, 956
BsoBI	CYCGRG	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	2 cut(s)	480, 956
BspCNI	CTCAG	3 cut(s)	211, 493, 745
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	117, 133
BspHI	TCATGA	2 cut(s)	682, 913
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	3 cut(s)	274, 1073, 1108
BspT104I	TTCGAA	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	56, 770, 1040
BssECI	CCNNGG	2 cut(s)	294, 369
BssMI	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
BssNI	GRCGYC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	1006
Bst6I	CTCTTC	2 cut(s)	1086, 1104
BstACI	GRCGYC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	746, 894, 954
BstDEI	CTNAG	3 cut(s)	198, 501, 732
BstENI	CCTNNNNNAGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	2 cut(s)	117, 133
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	6 cut(s)	100, 109, 269, 999, 1068, 1103
BstMAI	GTCTC	3 cut(s)	133, 432, 817
BstMBI	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 326, 380, 889
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	2 cut(s)	70, 1036
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	2 cut(s)	117, 133
BstV1I	GCAGC	1 cut(s)	1023
BstX2I	RGATCY	2 cut(s)	266, 1100
BstYI	RGATCY	2 cut(s)	266, 1100
BsuRI	GGCC	2 cut(s)	480, 956
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	4 cut(s)	385, 390, 501, 1002
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	746, 894, 954
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	2 cut(s)	682, 913
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	79, 702
CseI	GACGC	2 cut(s)	131, 251
CviAII	CATG	8 cut(s)	67, 442, 632, 678, 683, 863, 914, 1033
DdeI	CTNAG	3 cut(s)	198, 501, 732
DpnI	GATC	6 cut(s)	99, 108, 268, 998, 1067, 1102
DpnII	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
Eam1104I	CTCTTC	2 cut(s)	1086, 1104
EarI	CTCTTC	2 cut(s)	1086, 1104
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	2 cut(s)	79, 702
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	977
EcoNI	CCTNNNNNAGG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	8 cut(s)	70, 445, 635, 681, 686, 866, 917, 1036
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	8 cut(s)	66, 441, 631, 677, 682, 862, 913, 1032
Fnu4HI	GCNGC	1 cut(s)	1037
FokI	GGATG	1 cut(s)	546
Fsp4HI	GCNGC	1 cut(s)	1037
FspBI	CTAG	2 cut(s)	207, 270
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	1037
HaeIII	GGCC	2 cut(s)	480, 956
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	2 cut(s)	131, 251
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	8 cut(s)	70, 445, 635, 681, 686, 866, 917, 1036
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	4 cut(s)	662, 674, 730, 986
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	2 cut(s)	17, 590
Hpy188I	TCNGA	8 cut(s)	106, 370, 510, 529, 715, 725, 822, 1105
Hpy188III	TCNNGA	8 cut(s)	46, 207, 404, 683, 734, 764, 914, 977
Hpy8I	GTNNAC	2 cut(s)	17, 590
Hpy99I	CGWCG	2 cut(s)	245, 950
HpyAV	CCTTC	2 cut(s)	82, 1055
HpyCH4III	ACNGT	1 cut(s)	1006
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	7 cut(s)	257, 494, 748, 780, 896, 952, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 326, 380, 889
HpyF3I	CTNAG	3 cut(s)	198, 501, 732
HpySE526I	ACGT	1 cut(s)	948
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	8 cut(s)	70, 445, 635, 681, 686, 866, 917, 1036
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	1 cut(s)	1023
MaeI	CTAG	2 cut(s)	207, 270
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	6 cut(s)	99, 108, 268, 998, 1067, 1102
MboI	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
MboII	GAAGA	4 cut(s)	419, 952, 1103, 1121
MflI	RGATCY	2 cut(s)	266, 1100
MluCI	AATT	7 cut(s)	274, 284, 540, 789, 909, 1009, 1048
MlyI	GAGTC	2 cut(s)	724, 995
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	207, 364, 984, 1063, 1081, 1087, 1090
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	2 cut(s)	414, 771
MseI	TTAA	4 cut(s)	230, 543, 756, 1008
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	2 cut(s)	117, 133
MwoI	GCNNNNNNNGC	4 cut(s)	139, 326, 380, 889
NdeII	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
NlaIII	CATG	8 cut(s)	70, 445, 635, 681, 686, 866, 917, 1036
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	2 cut(s)	70, 1036
NspV	TTCGAA	1 cut(s)	622
PagI	TCATGA	2 cut(s)	682, 913
PciI	ACATGT	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	414, 771
PfeI	GAWTC	2 cut(s)	662, 674
PkrI	GCNGC	1 cut(s)	1038
PleI	GAGTC	2 cut(s)	724, 994
PpsI	GAGTC	2 cut(s)	724, 994
PpuMI	RGGWCCY	1 cut(s)	79
PscI	ACATGT	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	79, 702
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	266, 1100
SaqAI	TTAA	4 cut(s)	230, 543, 756, 1008
SatI	GCNGC	1 cut(s)	1037
Sau3AI	GATC	6 cut(s)	97, 106, 266, 996, 1065, 1100
Sau96I	GGNCC	2 cut(s)	79, 702
SchI	GAGTC	2 cut(s)	724, 995
ScrFI	CCNGG	1 cut(s)	581
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	2 cut(s)	79, 702
Sse9I	AATT	7 cut(s)	274, 284, 540, 789, 909, 1009, 1048
SsiI	CCGC	1 cut(s)	742
SspMI	CTAG	2 cut(s)	207, 270
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	1006
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	2 cut(s)	622, 1068
TasI	AATT	7 cut(s)	274, 284, 540, 789, 909, 1009, 1048
TfiI	GAWTC	2 cut(s)	662, 674
Tru1I	TTAA	4 cut(s)	230, 543, 756, 1008
Tru9I	TTAA	4 cut(s)	230, 543, 756, 1008
TscAI	CASTG	4 cut(s)	385, 397, 501, 1009
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	1036
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	7 cut(s)	17, 561, 699, 902, 930, 1095, 1122
TspGWI	ACGGA	2 cut(s)	466, 852
TspRI	CASTG	4 cut(s)	385, 397, 501, 1009
VpaK11BI	GGWCC	2 cut(s)	79, 702
VspI	ATTAAT	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	298
XapI	RAATTY	3 cut(s)	789, 909, 1048
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	2 cut(s)	70, 1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmnI	GAANNNNTTC	2 cut(s)	414, 771
XspI	CTAG	2 cut(s)	207, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.