Rroxscaffold_4G00302970

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005803
Physical Location & Seq
Forward (+)
23310711 .. 23314745
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302970.1

Sequence Viewer

Length: 1038 bp
ATGCCAGAGCTAATTCATATGGCTCCATGTATGGATTGGTTCAACGGGCTTGAACCTGACATGTCGGTGAAGGTCCTATCTTGTTTGGACAATCCAAAGGATCTTGTTCAAATTAGTACCGTCTCACGCACTTGGCGTCATATTGTGGTAGAAAATGGTCTGTGTAAGAAGCTTTGCTTGAGAATGTTTCCTCAGTTATCCAGAGTTGCTCATGTGATCGAGTCAAACAACCCTGATGCCAAAGAGTACGCAGAAGTTGGATCTAGCAATTTAAAGGAATGGAACACGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGATAGGGATTGCATTTCAGTGGCAATCAGTGCTTCCAGCACTGACAATTATCCAAGAGAAAGCATTCAACAGACTCTAGTGTCAAGAGATATGATTGCGCGGAGACCTTCATACTGGTCAAGTAAAGGCCAAATGAACCCTGCAGTGCCTGAGACGCTGACATACCAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCGAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCAGTGGTGTTCGATTTCGTATGGGGCATGCCAAATTCCCTATTGATGTAGAGAGTGACCCCATAGAGGAATCATGCCATGATGACAAGTTTGAGTGGACTTACACTTCGCAAGTGTTCCCAATGGCTCAGGAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAACTGGATGACCTGTTCTATATATGCGTGTCTCACGTTCAAGTCAAGGGGAAGTCACTAGGACCTTCATTTAGTGTCGAAACCAATGTACCATCTGGGCTGTTTGTGTTGGAGAGACAAACCAAGTTCAGCCAACCAAGCTTACCTGAGAATGAGTCCGATGCTATCTCTACTGGTGATTTGGAGAGACTCATTAGAGAATGGCGCTCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

345

Amino Acids

39.3

Weight (kDa)

5.35

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 61 3.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 533
AasI GACNNNNNNGTC 1 cut(s) 424
AccII CGCG 1 cut(s) 445
AciI CCGC 1 cut(s) 445
AclWI GGATC 2 cut(s) 108, 268
AcsI RAATTY 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 4 cut(s) 118, 248, 334, 912
AfiI CCNNNNNNNGG 2 cut(s) 349, 664
AflIII ACRYGT 2 cut(s) 60, 285
AgsI TTSAA 7 cut(s) 43, 53, 110, 413, 517, 751, 863
AloI GAACNNNNNNTCC 2 cut(s) 821, 853
AluBI AGCT 6 cut(s) 10, 172, 323, 566, 754, 963
AluI AGCT 6 cut(s) 10, 172, 323, 566, 754, 963
Alw26I GTCTC 7 cut(s) 127, 442, 491, 811, 858, 931, 1003
AlwI GGATC 2 cut(s) 108, 268
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 632
ArsI GACNNNNNNTTYG 2 cut(s) 688, 720
Asp700I GAANNNNTTC 2 cut(s) 408, 765
AspLEI GCGC 2 cut(s) 445, 1029
AspS9I GGNCC 2 cut(s) 73, 884
AsuHPI GGTGA 3 cut(s) 79, 576, 1010
AsuII TTCGAA 1 cut(s) 561
AvaII GGWCC 2 cut(s) 73, 884
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BccI CCATC 1 cut(s) 922
BcoDI GTCTC 7 cut(s) 127, 442, 491, 811, 858, 931, 1003
BfaI CTAG 3 cut(s) 264, 422, 881
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 1030
Bme18I GGWCC 2 cut(s) 73, 884
BmgT120I GGNCC 2 cut(s) 73, 884
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 2 cut(s) 226, 973
Bpu10I CCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 442
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 664
Bse1I ACTGG 6 cut(s) 464, 511, 600, 764, 831, 1000
BseGI GGATG 2 cut(s) 553, 835
BseLI CCNNNNNNNGG 2 cut(s) 349, 664
BseMII CTCAG 4 cut(s) 206, 486, 740, 960
BseNI ACTGG 6 cut(s) 464, 511, 600, 764, 831, 1000
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 349, 664
BsmAI GTCTC 7 cut(s) 127, 442, 491, 811, 858, 931, 1003
BsmBI CGTCTC 2 cut(s) 127, 491
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 561
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 3 cut(s) 100, 216, 260
BspACI CCGC 1 cut(s) 445
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 4 cut(s) 205, 487, 739, 961
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 2 cut(s) 108, 268
BspT104I TTCGAA 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 332
BsrI ACTGG 6 cut(s) 464, 511, 600, 764, 831, 1000
BssMI GATC 3 cut(s) 100, 216, 260
BssNI GRCGYC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 627, 740
BstDEI CTNAG 5 cut(s) 192, 319, 495, 726, 969
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 2 cut(s) 553, 835
BstFNI CGCG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 1030
BstHHI GCGC 2 cut(s) 445, 1029
BstKTI GATC 3 cut(s) 103, 219, 263
BstMAI GTCTC 7 cut(s) 127, 442, 491, 811, 858, 931, 1003
BstMBI GATC 3 cut(s) 100, 216, 260
BstMWI GCNNNNNNNGC 4 cut(s) 320, 374, 499, 960
BstNSI RCATGY 2 cut(s) 64, 629
BstPI GGTNACC 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 100, 260
BstYI RGATCY 2 cut(s) 100, 260
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 553, 835
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 5 cut(s) 369, 379, 384, 495, 607
Cac8I GCNNGC 2 cut(s) 627, 740
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 2 cut(s) 445, 1029
Cfr13I GGNCC 2 cut(s) 73, 884
CseI GACGC 2 cut(s) 125, 508
Csp6I GTAC 4 cut(s) 117, 247, 333, 911
CviAII CATG 8 cut(s) 27, 61, 212, 326, 578, 626, 672, 677
CviQI GTAC 4 cut(s) 117, 247, 333, 911
DdeI CTNAG 5 cut(s) 192, 319, 495, 726, 969
DpnI GATC 3 cut(s) 102, 218, 262
DpnII GATC 3 cut(s) 100, 216, 260
DraI TTTAAA 1 cut(s) 273
DrdI GACNNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 73, 884
Eco91I GGTNACC 1 cut(s) 582
EcoO109I RGGNCCY 2 cut(s) 73, 884
EcoO65I GGTNACC 1 cut(s) 582
Esp3I CGTCTC 2 cut(s) 127, 491
FaeI CATG 8 cut(s) 30, 64, 215, 329, 581, 629, 675, 680
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 8 cut(s) 26, 60, 211, 325, 577, 625, 671, 676
FauNDI CATATG 1 cut(s) 18
FokI GGATG 2 cut(s) 540, 842
FspBI CTAG 3 cut(s) 264, 422, 881
GlaI GCGC 2 cut(s) 444, 1028
HaeII RGCGCY 1 cut(s) 1030
HaeIII GGCC 1 cut(s) 474
HgaI GACGC 2 cut(s) 125, 508
HhaI GCGC 2 cut(s) 445, 1029
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 8 cut(s) 30, 64, 215, 329, 581, 629, 675, 680
Hin6I GCGC 2 cut(s) 443, 1027
HinP1I GCGC 2 cut(s) 443, 1027
HindIII AAGCTT 4 cut(s) 170, 564, 752, 961
HinfI GANTC 7 cut(s) 221, 306, 418, 668, 783, 977, 1011
HphI GGTGA 3 cut(s) 79, 576, 1010
Hpy166II GTNNAC 1 cut(s) 696
Hpy188I TCNGA 3 cut(s) 523, 816, 982
Hpy188III TCNNGA 4 cut(s) 201, 429, 728, 758
Hpy8I GTNNAC 1 cut(s) 696
HpyAV CCTTC 4 cut(s) 64, 325, 462, 897
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 287, 858
HpyCH4V TGCA 5 cut(s) 357, 488, 742, 774, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 374, 499, 960
HpyF3I CTNAG 5 cut(s) 192, 319, 495, 726, 969
HpySE526I ACGT 2 cut(s) 287, 858
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 8 cut(s) 30, 64, 215, 329, 581, 629, 675, 680
HspAI GCGC 2 cut(s) 443, 1027
Kzo9I GATC 3 cut(s) 100, 216, 260
LmnI GCTCC 2 cut(s) 28, 298
LweI GCATC 2 cut(s) 226, 973
MaeI CTAG 3 cut(s) 264, 422, 881
MaeII ACGT 2 cut(s) 287, 858
MaeIII GTNAC 3 cut(s) 582, 653, 876
MalI GATC 3 cut(s) 102, 218, 262
MboI GATC 3 cut(s) 100, 216, 260
MflI RGATCY 2 cut(s) 100, 260
MluCI AATT 6 cut(s) 12, 111, 268, 391, 534, 632
MlyI GAGTC 5 cut(s) 230, 315, 412, 986, 1005
MmeI TCCRAC 3 cut(s) 238, 270, 912
MnlI CCTC 3 cut(s) 201, 658, 801
MroXI GAANNNNTTC 2 cut(s) 408, 765
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 2 cut(s) 65, 362
Mva1269I GAATGC 1 cut(s) 408
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 4 cut(s) 320, 374, 499, 960
NdeI CATATG 1 cut(s) 18
NdeII GATC 3 cut(s) 100, 216, 260
NlaIII CATG 8 cut(s) 30, 64, 215, 329, 581, 629, 675, 680
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 3 cut(s) 582, 653, 876
NspI RCATGY 2 cut(s) 64, 629
NspV TTCGAA 1 cut(s) 561
PaeI GCATGC 1 cut(s) 629
PciI ACATGT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 408, 765
PfeI GAWTC 2 cut(s) 668, 783
PleI GAGTC 5 cut(s) 229, 314, 412, 985, 1005
PpsI GAGTC 5 cut(s) 229, 314, 412, 985, 1005
PpuMI RGGWCCY 2 cut(s) 73, 884
PscI ACATGT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 533
Psp5II RGGWCCY 2 cut(s) 73, 884
PspEI GGTNACC 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 73, 884
PspPPI RGGWCCY 2 cut(s) 73, 884
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 2 cut(s) 100, 260
RsaI GTAC 4 cut(s) 118, 248, 334, 912
RsaNI GTAC 4 cut(s) 117, 247, 333, 911
RseI CAYNNNNRTG 2 cut(s) 65, 362
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 3 cut(s) 100, 216, 260
Sau96I GGNCC 2 cut(s) 73, 884
SchI GAGTC 5 cut(s) 230, 315, 412, 986, 1005
SfaNI GCATC 2 cut(s) 226, 973
SfcI CTRYAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 2 cut(s) 73, 884
SmiMI CAYNNNNRTG 2 cut(s) 65, 362
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 629
Sse9I AATT 6 cut(s) 12, 111, 268, 391, 534, 632
SsiI CCGC 1 cut(s) 445
SspMI CTAG 3 cut(s) 264, 422, 881
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 290, 861
TaqI TCGA 4 cut(s) 219, 561, 610, 900
TasI AATT 6 cut(s) 12, 111, 268, 391, 534, 632
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 2 cut(s) 668, 783
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 5 cut(s) 369, 379, 391, 495, 607
TseFI GTSAC 3 cut(s) 582, 653, 876
Tsp45I GTSAC 3 cut(s) 582, 653, 876
TspDTI ATGAA 4 cut(s) 5, 444, 494, 879
TspRI CASTG 5 cut(s) 369, 379, 391, 495, 607
VpaK11BI GGWCC 2 cut(s) 73, 884
XapI RAATTY 1 cut(s) 632
XceI RCATGY 2 cut(s) 64, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 408, 765
XspI CTAG 3 cut(s) 264, 422, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.