Rw1G021030

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005803
Physical Location & Seq
Reverse (-)
44874361 .. 44878671
4311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021030.1

Sequence Viewer

Length: 921 bp
ATGTCGGTGAAGGTCCTAACTTATTTGGACAATCCAAAGGATCTTGTTCAAATTAGTACCGTCTCACACACTTGGCATCGTATTGTGGTAGAAAATGGTCTGTGTAAGAAGCTTTGCTTGAGAATGTTTCCTCAGTTATCCAGAGTTGCTCATGTGATCGAGTCAAACAACCCTGATGCCAAAGAGTACGCAGAAGTTGGATCTAGCAATTTAAAGGAATGGAACACGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCGTGATAGGGATTGCATTTCAGTGGCAATCAGTGCTTCCAGCACTGACCATTATCCAAGAGAAAGCATTCAAGAGACTCTAGAGTCAAGAGATATGATTGTGCAGAGACATTCATACTGGTCAAGTAAAGGCCAAATGAACCCTGCAGTGCCTGAGACGCTGACATACCAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCGAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCAGTGGTGTTCGATTTCGTATGGGGCATGCCAAATGCCATGATGACAAGTTTGAGTGGACTTACACTTCACAAGTGTTCACAATGACTCAGGAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAAGTGATAACCTGTTCTATATATGCGTGTCTCATGTTCAAGTCAAGGGGAAGTCACTAGGACCTTCATTTAGTGTTGAAACCAATGTGCCATCTGGGCTGTTTGTGTTGAAGAGACAAACCAAGCTCAGCCAACCAAGCTTACCTGAGAATGAGTCCGATGCTATCTCTACTGGTGATTTTGGAGAGACCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

306

Amino Acids

34.83

Weight (kDa)

6.31

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 3 - 41 2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AasI GACNNNNNNGTC 1 cut(s) 364
AclWI GGATC 2 cut(s) 48, 208
AfaI GTAC 3 cut(s) 58, 188, 274
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 7 cut(s) 50, 353, 457, 652, 764, 803, 835
AluBI AGCT 6 cut(s) 112, 263, 506, 655, 850, 864
AluI AGCT 6 cut(s) 112, 263, 506, 655, 850, 864
Alw26I GTCTC 8 cut(s) 67, 350, 382, 431, 712, 759, 832, 905
AlwI GGATC 2 cut(s) 48, 208
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 1 cut(s) 412
Asp700I GAANNNNTTC 2 cut(s) 348, 666
AspS9I GGNCC 2 cut(s) 13, 785
AsuHPI GGTGA 3 cut(s) 19, 516, 911
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 2 cut(s) 13, 785
BccI CCATC 1 cut(s) 823
BcoDI GTCTC 8 cut(s) 67, 350, 382, 431, 712, 759, 832, 905
BfaI CTAG 3 cut(s) 204, 362, 782
BfmI CTRYAG 1 cut(s) 426
BglI GCCNNNNNGGC 1 cut(s) 820
BlpI GCTNAGC 1 cut(s) 851
Bme18I GGWCC 2 cut(s) 13, 785
BmgT120I GGNCC 2 cut(s) 13, 785
BmsI GCATC 3 cut(s) 85, 166, 874
Bpu1102I GCTNAGC 1 cut(s) 851
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 905
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 5 cut(s) 404, 451, 540, 665, 901
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 5 cut(s) 146, 426, 641, 861, 865
BseNI ACTGG 5 cut(s) 404, 451, 540, 665, 901
BsgI GTGCAG 1 cut(s) 404
BshFI GGCC 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 8 cut(s) 67, 350, 382, 431, 712, 759, 832, 905
BsmBI CGTCTC 2 cut(s) 67, 431
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 905
Bsp119I TTCGAA 1 cut(s) 501
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 3 cut(s) 40, 156, 200
Bsp1720I GCTNAGC 1 cut(s) 851
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 5 cut(s) 145, 427, 640, 862, 864
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 2 cut(s) 48, 208
BspT104I TTCGAA 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 905
BsrGI TGTACA 1 cut(s) 272
BsrI ACTGG 5 cut(s) 404, 451, 540, 665, 901
BssMI GATC 3 cut(s) 40, 156, 200
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 830
BstAPI GCANNNNNTGC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 567, 641
BstDEI CTNAG 6 cut(s) 132, 259, 435, 627, 851, 870
BstEII GGTNACC 1 cut(s) 522
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 3 cut(s) 43, 159, 203
BstMAI GTCTC 8 cut(s) 67, 350, 382, 431, 712, 759, 832, 905
BstMBI GATC 3 cut(s) 40, 156, 200
BstMWI GCNNNNNNNGC 5 cut(s) 260, 314, 439, 820, 861
BstNSI RCATGY 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 426
BstX2I RGATCY 2 cut(s) 40, 200
BstYI RGATCY 2 cut(s) 40, 200
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 1 cut(s) 493
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 5 cut(s) 309, 319, 324, 435, 547
Cac8I GCNNGC 2 cut(s) 567, 641
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 13, 785
CseI GACGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 57, 187, 273
CviAII CATG 6 cut(s) 152, 266, 518, 566, 578, 758
CviJI RGCY 9 cut(s) 112, 263, 414, 506, 655, 823, 850, 855, 864
CviKI_1 RGCY 9 cut(s) 112, 263, 414, 506, 655, 823, 850, 855, 864
CviQI GTAC 3 cut(s) 57, 187, 273
DdeI CTNAG 6 cut(s) 132, 259, 435, 627, 851, 870
DpnI GATC 3 cut(s) 42, 158, 202
DpnII GATC 3 cut(s) 40, 156, 200
DraI TTTAAA 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Eco31I GGTCTC 1 cut(s) 905
Eco47I GGWCC 2 cut(s) 13, 785
Eco91I GGTNACC 1 cut(s) 522
EcoO109I RGGNCCY 2 cut(s) 13, 785
EcoO65I GGTNACC 1 cut(s) 522
Esp3I CGTCTC 2 cut(s) 67, 431
FaeI CATG 6 cut(s) 155, 269, 521, 569, 581, 761
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 6 cut(s) 151, 265, 517, 565, 577, 757
FokI GGATG 1 cut(s) 480
FspBI CTAG 3 cut(s) 204, 362, 782
HaeIII GGCC 1 cut(s) 414
HgaI GACGC 1 cut(s) 448
Hin1II CATG 6 cut(s) 155, 269, 521, 569, 581, 761
HindIII AAGCTT 4 cut(s) 110, 504, 653, 862
HinfI GANTC 7 cut(s) 161, 246, 358, 365, 625, 684, 878
HphI GGTGA 3 cut(s) 19, 516, 911
Hpy166II GTNNAC 2 cut(s) 597, 618
Hpy188I TCNGA 3 cut(s) 463, 717, 883
Hpy188III TCNNGA 6 cut(s) 141, 353, 362, 369, 629, 659
Hpy8I GTNNAC 2 cut(s) 597, 618
HpyAV CCTTC 3 cut(s) 4, 265, 798
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 6 cut(s) 297, 385, 428, 643, 675, 691
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 314, 439, 820, 861
HpyF3I CTNAG 6 cut(s) 132, 259, 435, 627, 851, 870
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 6 cut(s) 155, 269, 521, 569, 581, 761
Kzo9I GATC 3 cut(s) 40, 156, 200
LmnI GCTCC 1 cut(s) 238
LweI GCATC 3 cut(s) 85, 166, 874
MaeI CTAG 3 cut(s) 204, 362, 782
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 522, 777
MalI GATC 3 cut(s) 42, 158, 202
MboI GATC 3 cut(s) 40, 156, 200
MboII GAAGA 1 cut(s) 847
MflI RGATCY 2 cut(s) 40, 200
MluCI AATT 3 cut(s) 51, 208, 474
MlyI GAGTC 6 cut(s) 170, 255, 352, 374, 619, 887
MmeI TCCRAC 2 cut(s) 178, 210
MnlI CCTC 2 cut(s) 141, 702
MroXI GAANNNNTTC 2 cut(s) 348, 666
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 348
MwoI GCNNNNNNNGC 5 cut(s) 260, 314, 439, 820, 861
NdeII GATC 3 cut(s) 40, 156, 200
NlaIII CATG 6 cut(s) 155, 269, 521, 569, 581, 761
NmuCI GTSAC 2 cut(s) 522, 777
NspI RCATGY 1 cut(s) 569
NspV TTCGAA 1 cut(s) 501
PaeI GCATGC 1 cut(s) 569
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 2 cut(s) 348, 666
PfeI GAWTC 1 cut(s) 684
PleI GAGTC 6 cut(s) 169, 254, 352, 373, 619, 886
PpsI GAGTC 6 cut(s) 169, 254, 352, 373, 619, 886
PpuMI RGGWCCY 2 cut(s) 13, 785
PsiI TTATAA 1 cut(s) 473
Psp5II RGGWCCY 2 cut(s) 13, 785
PspEI GGTNACC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 13, 785
PspPPI RGGWCCY 2 cut(s) 13, 785
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 40, 200
RsaI GTAC 3 cut(s) 58, 188, 274
RsaNI GTAC 3 cut(s) 57, 187, 273
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 3 cut(s) 40, 156, 200
Sau96I GGNCC 2 cut(s) 13, 785
SchI GAGTC 6 cut(s) 170, 255, 352, 374, 619, 887
SfaNI GCATC 3 cut(s) 85, 166, 874
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 501
SinI GGWCC 2 cut(s) 13, 785
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SphI GCATGC 1 cut(s) 569
Sse9I AATT 3 cut(s) 51, 208, 474
SspMI CTAG 3 cut(s) 204, 362, 782
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 230
TaqI TCGA 3 cut(s) 159, 501, 550
TasI AATT 3 cut(s) 51, 208, 474
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 5 cut(s) 309, 319, 331, 435, 547
TseFI GTSAC 2 cut(s) 522, 777
Tsp45I GTSAC 2 cut(s) 522, 777
TspDTI ATGAA 3 cut(s) 384, 434, 780
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 5 cut(s) 309, 319, 331, 435, 547
VpaK11BI GGWCC 2 cut(s) 13, 785
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 569
XmnI GAANNNNTTC 2 cut(s) 348, 666
XspI CTAG 3 cut(s) 204, 362, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.