Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Forward (+)

455583 .. 458510

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAAGCTCTGAAAACCGCAACTTTTAGCCCTATGTCGGTGTTATCCGAGAAAAGATCAGAACCACGAAAGCCTTTCTCGCTCCCTAACCTCTTTCCACCAAAATCACAGAGACCAATCTCCCAAGAAAGCTTCTTGAAGAGATTCAATGGTGGATTGGCTCTTCTAACTTCTGTTCTAAGCAGTGCAACAGCTCCTGCTAAATCCCTGACGTACGAGGAAGCTCTGCAACAATCTATGACCACTTCTTCATCTTTTGATTCGGATGGTCTGATTGAAGGGATATCCAATTTTGTCACAGACAATCCTTTGGTTATTGCCGGTGGAGTTGCTGCATTGGCTGTTCCATTTGTTCTGTCTCAGGTTCTGAACAAGAAGCCCAAATCATGGGGAGTTGAGTCTGCTAAGAATGCTTATACCAAGTTGGGTACTGATGATAATGCTCAGTTGCTTGACATAAGAGCTACTGCTGATTTCAGACAAGTGGGCAGTCCTAATATTAAGGGTTTGGGTAAAAAAGCGGTTTCTACTGTTTATAACGGTGAAGACAAGCCTGGTTTCCTGAAGAAGCTTTCTTTGAAGTTTAAAGATCCTGAGAACACCACATTATACATTCTGGACAAGTTTGATGGAAACTCTGAGCTTGTTGCTGAATTGGTGGCTCTTAATGGATTCAAATCTGCTTATGCGATTAAAGATGGTGCAGAGGGACCTAGAGGCTGGTTGAATAGCAGCTTGCCTTGGATAGAGCCAAAGAAGACTCTCAGCCTTGATTTAAGCAGTTTGACGGATAGCATCAGCGGTGTATTTGGTGAGAGTTCTGATGGTGTATCTGTCGCTCTTGGAGTAGCTGCTGCTGCTGGATTAAGTGTTTTTGCATTTACAGAGATTGAAACCATACTCCAACTACTAGGTTCAGCTGCACTTGTTCAACTTGCAGGCAAGAAACTTCTATTTGCTGAGGACCGAAAGCAAACTCTAAAACAGGTGGATGAGTTCTTGAACACAAAGGTTGCCCCTAAAGAACTTGTTGATGAGTTAAAGGAAATAGGAAAGGCTCTTCTTCCTCAATCAACAAGCAACAAAGCTCTCCCAGCACCAGCAACAGTAACAGCAGAAGCAGAATCAGCTACAGCTACAACCACCACAGTCGATAAACCAGTACCTGAGCCAGAAACAGTTGCAGCTACAACAACCACTGTAGATAAACCAGTACCTGAGCCAGAGCCAGTGCCAGAGCCAGTGCCAGTGCCAGCGATTGAAGCTGCAGTCGCTGCACAAGTAATCACAGAACCAACCGAAACAGAAGCCAAACCAAAACCTCATTCAAGACCTCTCTCTCCATATGCATCGTACCCTGACTTGAAGCCTCCATCTTCTCCGATGCCATCGCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006091 GO:0006807 GO:0006950 GO:0006952 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042737 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0071704 GO:0097367 GO:0098542 GO:0098796 GO:0098807 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

466

Amino Acids

49.39

Weight (kDa)

5.22

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	387
AciI	CCGC	3 cut(s)	18, 521, 801
AclWI	GGATC	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	5 cut(s)	215, 430, 1164, 1215, 1355
AfiI	CCNNNNNNNGG	2 cut(s)	37, 387
AjnI	CCWGG	1 cut(s)	553
AjuI	GAANNNNNNNTTGG	2 cut(s)	1309, 1341
Alw26I	GTCTC	2 cut(s)	106, 363
AlwI	GGATC	1 cut(s)	584
AlwNI	CAGNNNCTG	5 cut(s)	197, 367, 1166, 1217, 1274
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	710, 964
AsuHPI	GGTGA	2 cut(s)	554, 824
AvaII	GGWCC	2 cut(s)	710, 964
BbsI	GAAGAC	2 cut(s)	552, 764
BbvCI	CCTCAGC	1 cut(s)	960
BbvI	GCAGC	9 cut(s)	319, 744, 838, 841, 844, 907, 1196, 1252, 1261
BccI	CCATC	6 cut(s)	260, 623, 692, 818, 1381, 1396
BciT130I	CCWGG	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	106, 363
BfaI	CTAG	2 cut(s)	714, 911
BfmI	CTRYAG	3 cut(s)	1131, 1200, 1266
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	2 cut(s)	710, 964
BmgT120I	GGNCC	2 cut(s)	710, 964
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	804, 1358, 1374
BpiI	GAAGAC	2 cut(s)	552, 764
Bpu10I	CCTNAGC	3 cut(s)	960, 1167, 1218
BsaBI	GATNNNNATC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 387
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	5 cut(s)	1160, 1211, 1229, 1241, 1247
Bse8I	GATNNNNATC	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	2 cut(s)	271, 997
BseJI	GATNNNNATC	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	37, 387
BseMII	CTCAG	8 cut(s)	374, 458, 585, 630, 778, 951, 1158, 1209
BseNI	ACTGG	5 cut(s)	1160, 1211, 1229, 1241, 1247
BseXI	GCAGC	9 cut(s)	319, 744, 838, 841, 844, 907, 1196, 1252, 1261
BseYI	CCCAGC	1 cut(s)	1093
BsgI	GTGCAG	3 cut(s)	723, 906, 1260
BsiSI	CCGG	1 cut(s)	321
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	37, 387
BsmAI	GTCTC	2 cut(s)	106, 363
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	415
Bso31I	GGTCTC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	56, 589
BspACI	CCGC	3 cut(s)	18, 521, 801
BspCNI	CTCAG	8 cut(s)	373, 457, 586, 631, 777, 952, 1159, 1210
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	1 cut(s)	1270
BspPI	GGATC	1 cut(s)	584
BspQI	GCTCTTC	2 cut(s)	168, 1065
BspTNI	GGTCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	5 cut(s)	1160, 1211, 1229, 1241, 1247
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	2 cut(s)	56, 589
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	6 cut(s)	532, 542, 1108, 1150, 1180, 1201
Bst6I	CTCTTC	3 cut(s)	134, 168, 1065
BstAPI	GCANNNNNTGC	1 cut(s)	1274
BstC8I	GCNNGC	3 cut(s)	737, 940, 1254
BstF5I	GGATG	2 cut(s)	271, 997
BstKTI	GATC	2 cut(s)	59, 592
BstMAI	GTCTC	2 cut(s)	106, 363
BstMBI	GATC	2 cut(s)	56, 589
BstNI	CCWGG	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	3 cut(s)	1131, 1200, 1266
BstV1I	GCAGC	9 cut(s)	319, 744, 838, 841, 844, 907, 1196, 1252, 1261
BstV2I	GAAGAC	2 cut(s)	552, 764
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	1374
BtsCI	GGATG	2 cut(s)	271, 997
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	5 cut(s)	190, 1197, 1236, 1248, 1254
Cac8I	GCNNGC	3 cut(s)	737, 940, 1254
CaiI	CAGNNNCTG	5 cut(s)	197, 367, 1166, 1217, 1274
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	710, 964
Csp6I	GTAC	5 cut(s)	214, 429, 1163, 1214, 1354
CviAII	CATG	1 cut(s)	387
CviQI	GTAC	5 cut(s)	214, 429, 1163, 1214, 1354
DpnI	GATC	2 cut(s)	58, 591
DpnII	GATC	2 cut(s)	56, 589
DraI	TTTAAA	1 cut(s)	586
Eam1104I	CTCTTC	3 cut(s)	134, 168, 1065
EarI	CTCTTC	3 cut(s)	134, 168, 1065
Eco130I	CCWWGG	1 cut(s)	740
Eco31I	GGTCTC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	710, 964
Eco57I	CTGAAG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	1351
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	1 cut(s)	390
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	1 cut(s)	386
FauNDI	CATATG	1 cut(s)	1345
FokI	GGATG	2 cut(s)	278, 1004
FspBI	CTAG	2 cut(s)	714, 911
GsaI	CCCAGC	1 cut(s)	1097
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	1 cut(s)	390
HindIII	AAGCTT	2 cut(s)	130, 569
HinfI	GANTC	6 cut(s)	144, 260, 398, 672, 760, 1124
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	554, 824
Hpy188III	TCNNGA	6 cut(s)	136, 562, 593, 617, 1000, 1329
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	6 cut(s)	532, 542, 1108, 1150, 1180, 1201
HpyCH4IV	ACGT	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	56, 589
LguI	GCTCTTC	2 cut(s)	168, 1065
LmnI	GCTCC	2 cut(s)	87, 199
Lsp1109I	GCAGC	9 cut(s)	319, 744, 838, 841, 844, 907, 1196, 1252, 1261
LweI	GCATC	3 cut(s)	804, 1358, 1374
MaeI	CTAG	2 cut(s)	714, 911
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	295, 1108
MalI	GATC	2 cut(s)	58, 591
MboI	GATC	2 cut(s)	56, 589
MboII	GAAGA	9 cut(s)	151, 155, 240, 557, 577, 769, 1052, 1055, 1368
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	2 cut(s)	289, 653
MlyI	GAGTC	2 cut(s)	407, 754
MmeI	TCCRAC	1 cut(s)	928
MnlI	CCTC	9 cut(s)	101, 211, 700, 710, 955, 1077, 1332, 1344, 1380
Mph1103I	ATGCAT	1 cut(s)	1351
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	7 cut(s)	501, 585, 666, 693, 776, 866, 1040
MspA1I	CMGCKG	2 cut(s)	801, 920
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	1345
NdeII	GATC	2 cut(s)	56, 589
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	1351
PciSI	GCTCTTC	2 cut(s)	168, 1065
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	4 cut(s)	144, 260, 672, 1124
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	387
PleI	GAGTC	2 cut(s)	406, 754
PpsI	GAGTC	2 cut(s)	406, 754
PpuMI	RGGWCCY	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	1093
PspGI	CCWGG	1 cut(s)	553
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	2 cut(s)	710, 964
PspPPI	RGGWCCY	1 cut(s)	710
PstI	CTGCAG	1 cut(s)	1270
PstNI	CAGNNNCTG	5 cut(s)	197, 367, 1166, 1217, 1274
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	5 cut(s)	215, 430, 1164, 1215, 1355
RsaNI	GTAC	5 cut(s)	214, 429, 1163, 1214, 1354
SapI	GCTCTTC	2 cut(s)	168, 1065
SaqAI	TTAA	7 cut(s)	501, 585, 666, 693, 776, 866, 1040
Sau3AI	GATC	2 cut(s)	56, 589
Sau96I	GGNCC	2 cut(s)	710, 964
SchI	GAGTC	2 cut(s)	407, 754
ScrFI	CCNGG	1 cut(s)	555
SfaNI	GCATC	3 cut(s)	804, 1358, 1374
SfcI	CTRYAG	3 cut(s)	1131, 1200, 1266
SinI	GGWCC	2 cut(s)	710, 964
Sse9I	AATT	2 cut(s)	289, 653
SsiI	CCGC	3 cut(s)	18, 521, 801
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	714, 911
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	6 cut(s)	532, 542, 1108, 1150, 1180, 1201
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	1152
TaqII	GACCGA	1 cut(s)	981
TasI	AATT	2 cut(s)	289, 653
TfiI	GAWTC	4 cut(s)	144, 260, 672, 1124
Tru1I	TTAA	7 cut(s)	501, 585, 666, 693, 776, 866, 1040
Tru9I	TTAA	7 cut(s)	501, 585, 666, 693, 776, 866, 1040
TscAI	CASTG	5 cut(s)	190, 1204, 1236, 1248, 1254
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	5 cut(s)	190, 1204, 1236, 1248, 1254
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	710, 964
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	2 cut(s)	714, 911
Zsp2I	ATGCAT	1 cut(s)	1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.