Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

53171723 .. 53175400

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGATAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCGCTACCCAAGTTCTCAAGCTCCACTAGCTTTAGTGCTAAAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCTTCTGTTTTCAATGCTGGGATTGCCAAGGCTTTGACATATGAAGAGGTATTGGGGCAGTCAGTGAGTACAGCAAATGGAGACTTCGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTGCAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTTCCTTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGGGTGCTTATGCAAAATTGGGTGAAGATGCAAATGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATCAGGCAAGTAGGTAGTCCGGATATCCGAGGTCTGAGGAAGAAGGCGGTGCCAATTGTTTATAAAGGGGAAGATAAGCCGGGCTTCTTAAAGAAGCTCACTTTGAAGTTCAAGGAACCAGAGAATACTACATTTTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGTGGCCTTCCTTGGATACCACCATCAAAAGCACTGAGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACCGGGCTGGGTTTATTGACTTTTACTGAGCTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCCGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCTTAACCACCAAGGTTGCCCCAAAGGAGTTTTTGGGTGACATAAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

353

Amino Acids

37.03

Weight (kDa)

6.67

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccB1I	GGYRCC	2 cut(s)	535, 836
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	2 cut(s)	533, 800
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	256, 942
AfiI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
AgsI	TTSAA	6 cut(s)	199, 279, 410, 592, 598, 688
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	2 cut(s)	478, 627
Alw21I	GWGCWC	2 cut(s)	289, 478
Alw26I	GTCTC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	726
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	6, 745
ApeKI	GCWGC	5 cut(s)	17, 692, 863, 866, 932
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	7, 722, 976
AsuC2I	CCSGG	2 cut(s)	567, 874
AsuHPI	GGTGA	4 cut(s)	59, 452, 748, 1058
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	2 cut(s)	722, 976
BanI	GGYRCC	2 cut(s)	535, 836
BanII	GRGCYC	3 cut(s)	289, 833, 929
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	289, 478
BbvI	GCAGC	5 cut(s)	29, 679, 850, 878, 919
BccI	CCATC	6 cut(s)	85, 356, 635, 704, 726, 772
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	2 cut(s)	480, 629
BciVI	GTATCC	2 cut(s)	750, 796
BcnI	CCSGG	2 cut(s)	567, 874
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	3 cut(s)	120, 902, 938
BfmI	CTRYAG	1 cut(s)	864
BfuI	GTATCC	2 cut(s)	750, 796
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	18, 693, 864, 867, 933
BlpI	GCTNAGC	1 cut(s)	928
BlsI	GCNGC	5 cut(s)	19, 694, 865, 868, 934
Bme1390I	CCNGG	4 cut(s)	480, 567, 629, 874
Bme18I	GGWCC	2 cut(s)	722, 976
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	7, 722, 976
BmiI	GGNNCC	4 cut(s)	537, 603, 724, 838
BmrFI	CCNGG	4 cut(s)	480, 567, 629, 874
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	3 cut(s)	393, 417, 832
Bpu1102I	GCTNAGC	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	567, 874
BsaJI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 972, 1020
BsaWI	WCCGGW	2 cut(s)	505, 978
Bsc4I	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
Bse1I	ACTGG	1 cut(s)	660
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	480, 629
BseDI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 972, 1020
BseGI	GGATG	2 cut(s)	624, 737
BseLI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
BseMII	CTCAG	6 cut(s)	512, 654, 767, 846, 888, 942
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	5 cut(s)	29, 679, 850, 878, 919
BseYI	CCCAGC	2 cut(s)	203, 877
BsgI	GTGCAG	2 cut(s)	735, 918
BshFI	GGCC	2 cut(s)	8, 747
BshNI	GGYRCC	2 cut(s)	535, 836
BsiHKAI	GWGCWC	2 cut(s)	289, 478
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	4 cut(s)	506, 566, 873, 979
BslI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	8, 747
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	4 cut(s)	289, 478, 833, 929
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	486
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	533, 800
BspANI	GGCC	2 cut(s)	8, 747
BspCNI	CTCAG	6 cut(s)	513, 655, 768, 845, 889, 941
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	537, 603, 724, 838
BspMAI	CTGCAG	1 cut(s)	868
BspT107I	GGYRCC	2 cut(s)	535, 836
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 972, 1020
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Bst2UI	CCWGG	2 cut(s)	480, 629
Bst4CI	ACNGT	2 cut(s)	676, 945
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	22, 952
BstDEI	CTNAG	9 cut(s)	156, 393, 417, 521, 663, 776, 832, 897, 928
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	624, 737
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 120, 209, 332, 353, 422, 698
BstNI	CCWGG	2 cut(s)	480, 629
BstSCI	CCNGG	4 cut(s)	478, 565, 627, 872
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	5 cut(s)	29, 679, 850, 878, 919
BstV2I	GAAGAC	1 cut(s)	180
BsuI	GTATCC	2 cut(s)	750, 796
BsuRI	GGCC	2 cut(s)	8, 747
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	624, 737
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	4 cut(s)	80, 255, 672, 773
Cac8I	GCNNGC	2 cut(s)	22, 952
Cfr13I	GGNCC	3 cut(s)	7, 722, 976
Csp6I	GTAC	2 cut(s)	255, 941
CspCI	CAANNNNNGTGG	2 cut(s)	1006, 1041
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	2 cut(s)	255, 941
DdeI	CTNAG	9 cut(s)	156, 393, 417, 521, 663, 776, 832, 897, 928
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Eco24I	GRGCYC	3 cut(s)	289, 833, 929
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	722, 976
Eco53kI	GAGCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	7, 722
EcoRII	CCWGG	2 cut(s)	478, 627
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	3 cut(s)	289, 833, 929
ErhI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	18, 693, 864, 867, 933
FokI	GGATG	2 cut(s)	611, 744
FriOI	GRGCYC	3 cut(s)	289, 833, 929
Fsp4HI	GCNGC	5 cut(s)	18, 693, 864, 867, 933
FspBI	CTAG	3 cut(s)	120, 902, 938
GluI	GCNGC	5 cut(s)	18, 693, 864, 867, 933
GsaI	CCCAGC	2 cut(s)	207, 881
HaeIII	GGCC	2 cut(s)	8, 747
HapII	CCGG	4 cut(s)	506, 566, 873, 979
Hin1II	CATG	1 cut(s)	170
HindIII	AAGCTT	2 cut(s)	22, 135
HinfI	GANTC	3 cut(s)	275, 388, 410
HpaII	CCGG	4 cut(s)	506, 566, 873, 979
HphI	GGTGA	4 cut(s)	59, 452, 748, 1058
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	515, 522, 652, 824
Hpy188III	TCNNGA	2 cut(s)	290, 506
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	523, 713, 758
HpyCH4III	ACNGT	2 cut(s)	676, 945
HpyCH4V	TGCA	8 cut(s)	17, 326, 431, 449, 455, 716, 866, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 120, 209, 332, 353, 422, 698
HpyF3I	CTNAG	9 cut(s)	156, 393, 417, 521, 663, 776, 832, 897, 928
Hsp92II	CATG	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	119, 284
Lsp1109I	GCAGC	5 cut(s)	29, 679, 850, 878, 919
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	120, 902, 938
MaeIII	GTNAC	3 cut(s)	372, 670, 1046
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	5 cut(s)	180, 242, 455, 538, 569
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	4 cut(s)	289, 478, 833, 929
MluCI	AATT	4 cut(s)	71, 327, 434, 540
MmeI	TCCRAC	2 cut(s)	802, 940
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	3 cut(s)	312, 575, 1013
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	4 cut(s)	506, 566, 873, 979
MspR9I	CCNGG	4 cut(s)	480, 567, 629, 874
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	2 cut(s)	480, 629
MwoI	GCNNNNNNNGC	7 cut(s)	14, 120, 209, 332, 353, 422, 698
NciI	CCSGG	2 cut(s)	567, 874
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	4 cut(s)	537, 603, 724, 838
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	3 cut(s)	372, 670, 1046
NsiI	ATGCAT	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	275, 388, 410
PflMI	CCANNNNNTGG	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	5 cut(s)	19, 694, 865, 868, 934
PpuMI	RGGWCCY	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	2 cut(s)	478, 627
PspFI	CCCAGC	2 cut(s)	203, 877
PspGI	CCWGG	2 cut(s)	478, 627
PspN4I	GGNNCC	4 cut(s)	537, 603, 724, 838
PspPI	GGNCC	3 cut(s)	7, 722, 976
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	868
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	2 cut(s)	256, 942
RsaNI	GTAC	2 cut(s)	255, 941
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	312, 575, 1013
SatI	GCNGC	5 cut(s)	18, 693, 864, 867, 933
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	3 cut(s)	7, 722, 976
ScrFI	CCNGG	4 cut(s)	480, 567, 629, 874
SduI	GDGCHC	4 cut(s)	289, 478, 833, 929
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	2 cut(s)	722, 976
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	4 cut(s)	71, 327, 434, 540
SsiI	CCGC	2 cut(s)	533, 800
SspMI	CTAG	3 cut(s)	120, 902, 938
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	4 cut(s)	478, 565, 627, 872
StyI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
TaaI	ACNGT	2 cut(s)	676, 945
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	71, 327, 434, 540
TatI	WGTACW	2 cut(s)	254, 940
TfiI	GAWTC	3 cut(s)	275, 388, 410
Tru1I	TTAA	3 cut(s)	312, 575, 1013
Tru9I	TTAA	3 cut(s)	312, 575, 1013
TscAI	CASTG	4 cut(s)	87, 255, 679, 780
TseFI	GTSAC	3 cut(s)	372, 670, 1046
TseI	GCWGC	5 cut(s)	17, 692, 863, 866, 932
Tsp45I	GTSAC	3 cut(s)	372, 670, 1046
TspDTI	ATGAA	3 cut(s)	141, 243, 613
TspRI	CASTG	4 cut(s)	87, 255, 679, 780
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	2 cut(s)	722, 976
XapI	RAATTY	1 cut(s)	71
XspI	CTAG	3 cut(s)	120, 902, 938
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.