MD07G1147500.v1.1

Rhodanese-like domain-containing protein 4 chloroplastic

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
21532749 .. 21536445
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1147500.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGGAGGCCTTCAATGCAGCAAGCTTGACCCCCATAAGATCAGTTCTTGGTGACAGAAGAAAAATCCCATCACTGCCTTCCATTTCCCTTCCCAAATTCTCCCATCCCACAGGTTTGAAAGCTTCACAAGAGTCTTCATCTCGGAGTTTCCATGGCGGCTTGCTGCTCTTATCTTCGGTTTTCAATGCCGGGTTTGCCAAGGCTTTGTCAAATGAGGAAGCACTGGGGCAGACTGTGAGTGGTGGAGGTGGAGACTTGGAAGTAGGTGGGGTTCTTGACAGTGTTATCAGTTTTGTGACCGATAATCCTGCAGTTGTCGCTGGCGGTTTCGCAGTTTTGGCGGTTCCATTGATTCTGTCTCAGGTTCTGAAGCCTCCTAAGCCGTTTGGTGTTGACTCTGCCAGAAGTGCTTATGCAAAATTGGGTGAGGAGGCCAATGCTCAGTTGCTTGATATAAGATCGCCAGCGGATTTTAGGCAGTTTGGTACTCCGGATGTCAAGGGTTTGGGGAAGAAGGCGGTGTCGATTGTTTACAAAGGTGAAGATAAGCCGGGTTTCTTGAAGAAACTCTCTTTGAAGTTCAAGGAGCCAGAAAATACCACATTGTTCATCCTCGATAAATTTGATGAGAACTCCGAGCTGGTTGCAGAATTAGTCACTGTAAATGGGTTCAAAGCTGCTTATGCTATTAAAGATGGTGCTGAAGGACCACGAGGATGGGTGAACAGCGGTCTTCCTTGGACACCACCAACAAAAGCACTGAGTTTTGATTTTGGCAATTTAACAGATGCTCTTAATGATGCAGTTGGAGAGGGCTCAGATACCTTGTCTCTTTCCCTTGGGGTTGCCGCAGCAACCGGATTGGGTTTATTGGCTTTTACTGAATTAGAAACAATCCTCCAAGTTTTAGGCTCAGCTGCACTAGTTCAGTTTGCAAGCAAGAAACTCCTTTTTGCTGAGGATCGAAAAGAAACTCTACAACAAGTTGATAAGTTCTTGACCACAAAGGTTGCCCCTAAGGAGCTCGTCGATGACATAAAGCAAATTGGGACAGCTCTTCTGCCAGTAACTGTTAGCAAGGCTCTTCCTGCACCTGCAGAACCAACTCCAGAGCCTACTGCTGCTAGTGATACTGTACAGAAAGCAGAAGCTGTGGTCGAACCAAAAGTAGAAGCAGCTACAGAAGCCACCCTGGAACCAAATTCAGTACCAAAACCAGAAGTTAAAGCAGAATCACTTCCTGGGATTTCAAAACCACTTTCCCCATTCCCTTATTATCCGGATTTCAAGCCTCCGGCATCTCCCAGACCATCGCAGCCCTAG

Protein Analysis

441

Amino Acids

46.23

Weight (kDa)

5.25

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 1 cut(s) 1102
AccIII TCCGGA 2 cut(s) 490, 1279
AciI CCGC 7 cut(s) 156, 324, 341, 467, 518, 729, 849
AclWI GGATC 1 cut(s) 969
AcsI RAATTY 3 cut(s) 95, 620, 1201
AcuI CTGAAG 2 cut(s) 389, 723
AfaI GTAC 3 cut(s) 487, 1137, 1209
AgsI TTSAA 9 cut(s) 13, 118, 184, 562, 577, 583, 673, 1251, 1288
AhlI ACTAGT 1 cut(s) 922
AjnI CCWGG 2 cut(s) 1191, 1240
AluBI AGCT 9 cut(s) 24, 122, 640, 677, 917, 1024, 1055, 1151, 1178
AluI AGCT 9 cut(s) 24, 122, 640, 677, 917, 1024, 1055, 1151, 1178
Alw21I GWGCWC 1 cut(s) 1026
Alw26I GTCTC 3 cut(s) 246, 363, 834
AlwI GGATC 1 cut(s) 969
AlwNI CAGNNNCTG 3 cut(s) 367, 1070, 1151
Aor13HI TCCGGA 2 cut(s) 490, 1279
AoxI GGCC 2 cut(s) 6, 432
ApeKI GCWGC 8 cut(s) 17, 163, 677, 851, 917, 1121, 1175, 1315
ApoI RAATTY 3 cut(s) 95, 620, 1201
Asp700I GAANNNNTTC 1 cut(s) 1236
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 2 cut(s) 190, 552
AsuHPI GGTGA 4 cut(s) 62, 437, 551, 733
AvaII GGWCC 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 1017
BanII GRGCYC 2 cut(s) 818, 1026
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 2 cut(s) 126, 725
Bbv12I GWGCWC 1 cut(s) 1026
BbvCI CCTCAGC 1 cut(s) 957
BbvI GCAGC 7 cut(s) 29, 150, 664, 863, 904, 1108, 1187
BccI CCATC 5 cut(s) 76, 111, 689, 711, 1318
BceAI ACGGC 1 cut(s) 367
BcgI CGANNNNNNTGC 4 cut(s) 290, 324, 626, 660
BciT130I CCWGG 2 cut(s) 1193, 1242
BcnI CCSGG 2 cut(s) 190, 552
BcoDI GTCTC 3 cut(s) 246, 363, 834
BcuI ACTAGT 1 cut(s) 922
BfaI CTAG 3 cut(s) 923, 1125, 1321
BfmI CTRYAG 3 cut(s) 309, 1095, 1179
BfuAI ACCTGC 1 cut(s) 1102
BlpI GCTNAGC 1 cut(s) 913
Bme1390I CCNGG 4 cut(s) 190, 552, 1193, 1242
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 3 cut(s) 345, 588, 1197
BmrFI CCNGG 4 cut(s) 190, 552, 1193, 1242
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 778, 790, 1307
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 2 cut(s) 126, 725
BpmI CTGGAG 1 cut(s) 1092
Bpu10I CCTNAGC 2 cut(s) 378, 957
Bpu1102I GCTNAGC 1 cut(s) 913
BpuMI CCSGG 2 cut(s) 190, 552
BsaJI CCNNGG 6 cut(s) 151, 198, 737, 838, 1191, 1241
BsaWI WCCGGW 3 cut(s) 490, 857, 1279
Bse1I ACTGG 2 cut(s) 228, 1064
Bse21I CCTNAGG 1 cut(s) 1017
BseAI TCCGGA 2 cut(s) 490, 1279
BseBI CCWGG 2 cut(s) 1193, 1242
BseDI CCNNGG 6 cut(s) 151, 198, 737, 838, 1191, 1241
BseGI GGATG 4 cut(s) 103, 499, 609, 722
BseMII CTCAG 6 cut(s) 374, 455, 752, 831, 927, 948
BseNI ACTGG 2 cut(s) 228, 1064
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 7 cut(s) 29, 150, 664, 863, 904, 1108, 1187
BsgI GTGCAG 2 cut(s) 903, 1074
BshFI GGCC 2 cut(s) 8, 434
BsiHKAI GWGCWC 1 cut(s) 1026
BsiSI CCGG 6 cut(s) 189, 491, 551, 858, 1280, 1295
BslFI GGGAC 1 cut(s) 1063
BsmAI GTCTC 3 cut(s) 246, 363, 834
BsmFI GGGAC 1 cut(s) 1063
BsnI GGCC 2 cut(s) 8, 434
Bsp1286I GDGCHC 2 cut(s) 818, 1026
Bsp13I TCCGGA 2 cut(s) 490, 1279
Bsp1407I TGTACA 1 cut(s) 1135
Bsp143I GATC 3 cut(s) 38, 458, 961
Bsp1720I GCTNAGC 1 cut(s) 913
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 7 cut(s) 156, 324, 341, 467, 518, 729, 849
BspANI GGCC 2 cut(s) 8, 434
BspCNI CTCAG 6 cut(s) 373, 454, 753, 830, 926, 949
BspEI TCCGGA 2 cut(s) 490, 1279
BspLI GGNNCC 3 cut(s) 345, 588, 1197
BspMAI CTGCAG 2 cut(s) 313, 1099
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 1 cut(s) 969
BspQI GCTCTTC 2 cut(s) 1062, 1089
BsrGI TGTACA 1 cut(s) 1135
BsrI ACTGG 2 cut(s) 228, 1064
BssECI CCNNGG 6 cut(s) 151, 198, 737, 838, 1191, 1241
BssMI GATC 3 cut(s) 38, 458, 961
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 4 cut(s) 151, 198, 737, 838
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 2 cut(s) 1193, 1242
Bst4CI ACNGT 5 cut(s) 235, 281, 661, 1072, 1135
Bst6I CTCTTC 2 cut(s) 1062, 1089
BstAUI TGTACA 1 cut(s) 1135
BstC8I GCNNGC 5 cut(s) 22, 161, 322, 465, 937
BstDEI CTNAG 8 cut(s) 360, 378, 441, 761, 817, 913, 957, 1017
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 4 cut(s) 103, 499, 609, 722
BstKTI GATC 3 cut(s) 41, 461, 964
BstMAI GTCTC 3 cut(s) 246, 363, 834
BstMBI GATC 3 cut(s) 38, 458, 961
BstMWI GCNNNNNNNGC 9 cut(s) 14, 194, 317, 338, 379, 407, 683, 1088, 1184
BstNI CCWGG 2 cut(s) 1193, 1242
BstSCI CCNGG 4 cut(s) 188, 550, 1191, 1240
BstSFI CTRYAG 3 cut(s) 309, 1095, 1179
BstV1I GCAGC 7 cut(s) 29, 150, 664, 863, 904, 1108, 1187
BstV2I GAAGAC 2 cut(s) 126, 725
BstXI CCANNNNNNTGG 1 cut(s) 717
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 2 cut(s) 8, 434
BtgI CCRYGG 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 1296
BtsCI GGATG 4 cut(s) 103, 499, 609, 722
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 5 cut(s) 71, 221, 286, 657, 758
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 5 cut(s) 22, 161, 322, 465, 937
CaiI CAGNNNCTG 3 cut(s) 367, 1070, 1151
Cfr13I GGNCC 1 cut(s) 707
Csp6I GTAC 3 cut(s) 486, 1136, 1208
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CviAII CATG 1 cut(s) 152
CviQI GTAC 3 cut(s) 486, 1136, 1208
DdeI CTNAG 8 cut(s) 360, 378, 441, 761, 817, 913, 957, 1017
DpnI GATC 3 cut(s) 40, 460, 963
DpnII GATC 3 cut(s) 38, 458, 961
Eam1104I CTCTTC 2 cut(s) 1062, 1089
EarI CTCTTC 2 cut(s) 1062, 1089
Ecl136II GAGCTC 1 cut(s) 1024
Eco130I CCWWGG 4 cut(s) 151, 198, 737, 838
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 2 cut(s) 818, 1026
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 1024
Eco57I CTGAAG 2 cut(s) 389, 723
Eco81I CCTNAGG 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 1024
EcoRII CCWGG 2 cut(s) 1191, 1240
EcoT14I CCWWGG 4 cut(s) 151, 198, 737, 838
EcoT38I GRGCYC 2 cut(s) 818, 1026
ErhI CCWWGG 4 cut(s) 151, 198, 737, 838
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 35, 153, 414, 455, 684, 1037
FaqI GGGAC 1 cut(s) 1063
FatI CATG 1 cut(s) 151
FokI GGATG 4 cut(s) 90, 506, 596, 729
FriOI GRGCYC 2 cut(s) 818, 1026
FspBI CTAG 3 cut(s) 923, 1125, 1321
GsuI CTGGAG 1 cut(s) 1092
HaeIII GGCC 2 cut(s) 8, 434
HapII CCGG 6 cut(s) 189, 491, 551, 858, 1280, 1295
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 22, 120
HinfI GANTC 4 cut(s) 131, 352, 395, 1232
HpaII CCGG 6 cut(s) 189, 491, 551, 858, 1280, 1295
HphI GGTGA 4 cut(s) 62, 437, 551, 733
Hpy166II GTNNAC 3 cut(s) 394, 532, 724
Hpy188I TCNGA 4 cut(s) 144, 369, 637, 820
Hpy188III TCNNGA 6 cut(s) 275, 491, 559, 997, 1109, 1280
Hpy8I GTNNAC 3 cut(s) 394, 532, 724
Hpy99I CGWCG 1 cut(s) 1031
HpyAV CCTTC 5 cut(s) 19, 87, 98, 508, 698
HpyCH4III ACNGT 5 cut(s) 235, 281, 661, 1072, 1135
HpyCH4V TGCA 9 cut(s) 17, 311, 416, 647, 803, 920, 935, 1091, 1097
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 194, 317, 338, 379, 407, 683, 1088, 1184
HpyF3I CTNAG 8 cut(s) 360, 378, 441, 761, 817, 913, 957, 1017
Hsp92II CATG 1 cut(s) 155
Kpn2I TCCGGA 2 cut(s) 490, 1279
Kzo9I GATC 3 cut(s) 38, 458, 961
LguI GCTCTTC 2 cut(s) 1062, 1089
LmnI GCTCC 2 cut(s) 586, 1021
Lsp1109I GCAGC 7 cut(s) 29, 150, 664, 863, 904, 1108, 1187
LweI GCATC 3 cut(s) 778, 790, 1307
MaeI CTAG 3 cut(s) 923, 1125, 1321
MaeIII GTNAC 4 cut(s) 50, 295, 655, 1066
MalI GATC 3 cut(s) 40, 460, 963
MboI GATC 3 cut(s) 38, 458, 961
MboII GAAGA 9 cut(s) 69, 126, 165, 523, 554, 574, 725, 1049, 1076
MhlI GDGCHC 2 cut(s) 818, 1026
MluCI AATT 8 cut(s) 95, 419, 620, 650, 778, 884, 1044, 1201
MlyI GAGTC 2 cut(s) 140, 389
MmeI TCCRAC 1 cut(s) 787
MroI TCCGGA 2 cut(s) 490, 1279
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 4 cut(s) 690, 782, 795, 1224
MslI CAYNNNNRTG 1 cut(s) 715
MspA1I CMGCKG 3 cut(s) 467, 729, 917
MspI CCGG 6 cut(s) 189, 491, 551, 858, 1280, 1295
MspR9I CCNGG 4 cut(s) 190, 552, 1193, 1242
MvaI CCWGG 2 cut(s) 1193, 1242
MwoI GCNNNNNNNGC 9 cut(s) 14, 194, 317, 338, 379, 407, 683, 1088, 1184
NciI CCSGG 2 cut(s) 190, 552
NcoI CCATGG 1 cut(s) 151
NdeII GATC 3 cut(s) 38, 458, 961
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 3 cut(s) 345, 588, 1197
NmuCI GTSAC 3 cut(s) 50, 295, 655
PaqCI CACCTGC 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 8
PciSI GCTCTTC 2 cut(s) 1062, 1089
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 2 cut(s) 352, 1232
PleI GAGTC 2 cut(s) 139, 389
PpsI GAGTC 2 cut(s) 139, 389
Psp124BI GAGCTC 1 cut(s) 1026
Psp6I CCWGG 2 cut(s) 1191, 1240
PspGI CCWGG 2 cut(s) 1191, 1240
PspN4I GGNNCC 3 cut(s) 345, 588, 1197
PspPI GGNCC 1 cut(s) 707
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
PstI CTGCAG 2 cut(s) 313, 1099
PstNI CAGNNNCTG 3 cut(s) 367, 1070, 1151
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 487, 1137, 1209
RsaNI GTAC 3 cut(s) 486, 1136, 1208
RseI CAYNNNNRTG 1 cut(s) 715
SacI GAGCTC 1 cut(s) 1026
SapI GCTCTTC 2 cut(s) 1062, 1089
SaqAI TTAA 4 cut(s) 690, 782, 795, 1224
Sau3AI GATC 3 cut(s) 38, 458, 961
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 2 cut(s) 140, 389
ScrFI CCNGG 4 cut(s) 190, 552, 1193, 1242
SduI GDGCHC 2 cut(s) 818, 1026
SfaNI GCATC 3 cut(s) 778, 790, 1307
SfcI CTRYAG 3 cut(s) 309, 1095, 1179
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 715
SpeI ACTAGT 1 cut(s) 922
Sse9I AATT 8 cut(s) 95, 419, 620, 650, 778, 884, 1044, 1201
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 7 cut(s) 156, 324, 341, 467, 518, 729, 849
SspMI CTAG 3 cut(s) 923, 1125, 1321
SstI GAGCTC 1 cut(s) 1026
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 188, 550, 1191, 1240
StyI CCWWGG 4 cut(s) 151, 198, 737, 838
TaaI ACNGT 5 cut(s) 235, 281, 661, 1072, 1135
TaqI TCGA 5 cut(s) 524, 615, 964, 1029, 1158
TaqII GACCGA 1 cut(s) 314
TasI AATT 8 cut(s) 95, 419, 620, 650, 778, 884, 1044, 1201
TatI WGTACW 1 cut(s) 1135
TauI GCSGC 2 cut(s) 159, 851
TfiI GAWTC 2 cut(s) 352, 1232
Tru1I TTAA 4 cut(s) 690, 782, 795, 1224
Tru9I TTAA 4 cut(s) 690, 782, 795, 1224
TscAI CASTG 5 cut(s) 78, 228, 286, 664, 765
TseFI GTSAC 3 cut(s) 50, 295, 655
TseI GCWGC 8 cut(s) 17, 163, 677, 851, 917, 1121, 1175, 1315
Tsp45I GTSAC 3 cut(s) 50, 295, 655
TspDTI ATGAA 2 cut(s) 126, 598
TspRI CASTG 5 cut(s) 78, 228, 286, 664, 765
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 95, 620, 1201
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 3 cut(s) 923, 1125, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.