Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

18535278 .. 18538799

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAGGCCCTCCATGCAGCAAGCTTGACCCCCATAAGATCACTTCTTGGTGACAGAAAAAAAATCCCATCACTGCCCTCCATTTCCGTTCCCAAATTCTCAAATCCCACAAGTTTGAGAGCTTCACAAGAGTCTTCATCTAGGAGTTTCCATGGCGGTTTGCCGCTCTTATCTTCGGTTTTCAATGCCGGGTTTGCCAAGGCTTTGACATATGAGGAAGCATTGGGGCAGTCAGTGAGTGGTGGAGGTGGAGACTTGGAAGTAGGTGGGGTTCTTGACAATGTTATCAGTTTTGTGACTGATAATCCTGCAGTTATAGCTGGCGGTTTTGCGGTTTTGGCGGTTCCATTGGTTCTGTCTCAGGTTCTGAAGCCTCCTAAGCCGTTTGGTGTTGACTCTGCAAGAAGTGCTTATGCAAAATTGGGTGAGGATGCCAATGCTCAGTTGCTTGATATAAGACCTCCCGCGGAGTTTAGGCAGGTTGGTACTCCCGATGTCAAGGGTTTGGGGAAGAAGGCCGTGTCCATTGTTTACAAAAGTGAAGATAAGCCGGGGTTCTTGAAGAAGCTTTCTTTGAAGTTCAAGGAGCCAGAAAATACCACATTGTTCATCCTAGATAAATTTGATGGGAACTCTGAGCTGGCTGCAGAATTAGTCGCTGTAAATGGGTTCAAAGCTGCTTATGCTATTAAAGATGGTGCGGAAGGACCACGAGGATGGGTGAACAGCGGTCTTCCTTGGACACCACCACCAAAAGCACTGAGTCTTGATTTTGGAAATTTAGCAGATGCTCTTAGCGGTGGAGTTGGAGAGGGATCGGGTGCCTTGTCTCTTTCCCTTGGGGTTGCTGCAGCAACCGGATTGGGTTTATTGGCTTATACTGAGGTAGAAACAATCCTCCAGCTTTTAGGCTCGGCTGCACTAGTTCAGTTTGTGAGCACGAAACTCCTTTTTGCCGAGGATCGAAAAGAAACTCTACAACAAGTTGATAAGTTCTTGACGACGAAGGTTGCCCCAAAGGACCTCGTCGATGACATAAAGCAAATCGGGACAGCTTTTCTGCCAGTAACTGTTAGCAAGGTTCTTCCTGCACCTGCAGAACCAACTGTAGAAGCAGCTGCAGAAGCCACACCGGAACCAAATTCAGTACCAAAACCAGAAGTTAAAGCAGAATCACTTCCCAGGATTTCGAAACCACTTTCCCCATTCCCTTATTATCCGGATTTCAAGCCTCCGGCATCCCCCAGACCATCGCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006091 GO:0006807 GO:0006950 GO:0006952 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009772 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016787 GO:0016798 GO:0017144 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042737 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046348 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0071704 GO:0097367 GO:0098542 GO:0098796 GO:0098807 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

43.96

Weight (kDa)

5.93

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1102
Acc36I	ACCTGC	2 cut(s)	469, 1102
AccB1I	GGYRCC	1 cut(s)	821
AccBSI	CCGCTC	1 cut(s)	166
AccII	CGCG	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	1219
AclWI	GGATC	2 cut(s)	823, 969
AcsI	RAATTY	4 cut(s)	95, 620, 778, 1141
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	2 cut(s)	487, 1149
AgsI	TTSAA	6 cut(s)	184, 562, 577, 583, 673, 1228
AhlI	ACTAGT	1 cut(s)	922
AjnI	CCWGG	1 cut(s)	1181
AluBI	AGCT	9 cut(s)	24, 122, 320, 568, 640, 677, 904, 1055, 1118
AluI	AGCT	9 cut(s)	24, 122, 320, 568, 640, 677, 904, 1055, 1118
Alw21I	GWGCWC	1 cut(s)	941
Alw26I	GTCTC	3 cut(s)	246, 363, 834
AlwI	GGATC	2 cut(s)	823, 969
AlwNI	CAGNNNCTG	2 cut(s)	367, 1070
Aor13HI	TCCGGA	1 cut(s)	1219
AoxI	GGCC	2 cut(s)	6, 516
ApeKI	GCWGC	9 cut(s)	17, 644, 677, 848, 851, 917, 1115, 1118, 1255
ApoI	RAATTY	4 cut(s)	95, 620, 778, 1141
Asp700I	GAANNNNTTC	1 cut(s)	1176
AspS9I	GGNCC	3 cut(s)	7, 707, 1021
AsuC2I	CCSGG	2 cut(s)	190, 552
AsuHPI	GGTGA	3 cut(s)	62, 437, 733
AsuII	TTCGAA	1 cut(s)	1190
AvaII	GGWCC	2 cut(s)	707, 1021
BanI	GGYRCC	1 cut(s)	821
BauI	CACGAG	1 cut(s)	711
BbsI	GAAGAC	2 cut(s)	126, 725
Bbv12I	GWGCWC	1 cut(s)	941
BbvI	GCAGC	8 cut(s)	29, 631, 664, 835, 863, 904, 1105, 1127
BccI	CCATC	5 cut(s)	76, 620, 689, 711, 1258
BceAI	ACGGC	2 cut(s)	367, 503
BciT130I	CCWGG	1 cut(s)	1183
BcnI	CCSGG	2 cut(s)	190, 552
BcoDI	GTCTC	3 cut(s)	246, 363, 834
BcuI	ACTAGT	1 cut(s)	922
BfaI	CTAG	4 cut(s)	141, 614, 923, 1261
BfmI	CTRYAG	6 cut(s)	309, 645, 849, 1095, 1107, 1119
BfuAI	ACCTGC	2 cut(s)	469, 1102
Bme1390I	CCNGG	3 cut(s)	190, 552, 1183
Bme18I	GGWCC	2 cut(s)	707, 1021
BmgT120I	GGNCC	3 cut(s)	7, 707, 1021
BmiI	GGNNCC	4 cut(s)	345, 588, 823, 1137
BmrFI	CCNGG	3 cut(s)	190, 552, 1183
BmsI	GCATC	3 cut(s)	421, 778, 1247
BpiI	GAAGAC	2 cut(s)	126, 725
BpmI	CTGGAG	1 cut(s)	884
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	1190
BpuMI	CCSGG	2 cut(s)	190, 552
BsaJI	CCNNGG	8 cut(s)	151, 198, 465, 551, 737, 838, 957, 1181
BsaWI	WCCGGW	3 cut(s)	857, 1132, 1219
Bse1I	ACTGG	1 cut(s)	1064
BseAI	TCCGGA	1 cut(s)	1219
BseBI	CCWGG	1 cut(s)	1183
BseDI	CCNNGG	8 cut(s)	151, 198, 465, 551, 737, 838, 957, 1181
BseGI	GGATG	4 cut(s)	436, 609, 722, 1238
BseMII	CTCAG	5 cut(s)	374, 455, 627, 752, 873
BseNI	ACTGG	1 cut(s)	1064
BseXI	GCAGC	8 cut(s)	29, 631, 664, 835, 863, 904, 1105, 1127
BsgI	GTGCAG	2 cut(s)	903, 1074
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	8, 518
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	6 cut(s)	189, 551, 858, 1133, 1220, 1235
BslFI	GGGAC	1 cut(s)	1063
BsmAI	GTCTC	3 cut(s)	246, 363, 834
BsmFI	GGGAC	1 cut(s)	1063
BsnI	GGCC	2 cut(s)	8, 518
Bsp119I	TTCGAA	1 cut(s)	1190
Bsp1286I	GDGCHC	1 cut(s)	941
Bsp13I	TCCGGA	1 cut(s)	1219
Bsp143I	GATC	3 cut(s)	38, 815, 961
Bsp19I	CCATGG	1 cut(s)	151
BspANI	GGCC	2 cut(s)	8, 518
BspCNI	CTCAG	5 cut(s)	373, 454, 628, 753, 874
BspEI	TCCGGA	1 cut(s)	1219
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	4 cut(s)	345, 588, 823, 1137
BspMAI	CTGCAG	5 cut(s)	313, 649, 853, 1099, 1123
BspMI	ACCTGC	2 cut(s)	469, 1102
BspPI	GGATC	2 cut(s)	823, 969
BspT104I	TTCGAA	1 cut(s)	1190
BspT107I	GGYRCC	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	1064
BssECI	CCNNGG	8 cut(s)	151, 198, 465, 551, 737, 838, 957, 1181
BssMI	GATC	3 cut(s)	38, 815, 961
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	4 cut(s)	151, 198, 737, 838
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	1183
Bst4CI	ACNGT	2 cut(s)	1072, 1108
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	1190
BstC8I	GCNNGC	3 cut(s)	22, 322, 642
BstDEI	CTNAG	7 cut(s)	360, 378, 441, 636, 761, 794, 882
BstDSI	CCRYGG	2 cut(s)	151, 465
BstF5I	GGATG	4 cut(s)	436, 609, 722, 1238
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	3 cut(s)	41, 818, 964
BstMAI	GTCTC	3 cut(s)	246, 363, 834
BstMBI	GATC	3 cut(s)	38, 815, 961
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 194, 317, 338, 379, 407, 683, 1124
BstNI	CCWGG	1 cut(s)	1183
BstSCI	CCNGG	3 cut(s)	188, 550, 1181
BstSFI	CTRYAG	6 cut(s)	309, 645, 849, 1095, 1107, 1119
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	8 cut(s)	29, 631, 664, 835, 863, 904, 1105, 1127
BstV2I	GAAGAC	2 cut(s)	126, 725
BstXI	CCANNNNNNTGG	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	8, 518
BtgI	CCRYGG	2 cut(s)	151, 465
BtgZI	GCGATG	1 cut(s)	1236
BtsCI	GGATG	4 cut(s)	436, 609, 722, 1238
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	3 cut(s)	71, 240, 758
BveI	ACCTGC	2 cut(s)	469, 1102
Cac8I	GCNNGC	3 cut(s)	22, 322, 642
CaiI	CAGNNNCTG	2 cut(s)	367, 1070
Cfr13I	GGNCC	3 cut(s)	7, 707, 1021
Cfr42I	CCGCGG	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	486, 1148
CviAII	CATG	2 cut(s)	14, 152
CviQI	GTAC	2 cut(s)	486, 1148
DdeI	CTNAG	7 cut(s)	360, 378, 441, 636, 761, 794, 882
DpnI	GATC	3 cut(s)	40, 817, 963
DpnII	GATC	3 cut(s)	38, 815, 961
Eco130I	CCWWGG	4 cut(s)	151, 198, 737, 838
Eco47I	GGWCC	2 cut(s)	707, 1021
Eco57I	CTGAAG	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	7, 1021
EcoRII	CCWGG	1 cut(s)	1181
EcoT14I	CCWWGG	4 cut(s)	151, 198, 737, 838
ErhI	CCWWGG	4 cut(s)	151, 198, 737, 838
FaeI	CATG	2 cut(s)	17, 155
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	1063
FatI	CATG	2 cut(s)	13, 151
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	211
FokI	GGATG	4 cut(s)	443, 596, 729, 1225
FspBI	CTAG	4 cut(s)	141, 614, 923, 1261
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	2 cut(s)	8, 518
HapII	CCGG	6 cut(s)	189, 551, 858, 1133, 1220, 1235
Hin1II	CATG	2 cut(s)	17, 155
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	22, 566
HinfI	GANTC	4 cut(s)	131, 395, 763, 1172
HpaII	CCGG	6 cut(s)	189, 551, 858, 1133, 1220, 1235
HphI	GGTGA	3 cut(s)	62, 437, 733
Hpy166II	GTNNAC	3 cut(s)	394, 532, 724
Hpy188I	TCNGA	2 cut(s)	369, 637
Hpy188III	TCNNGA	7 cut(s)	275, 491, 559, 767, 997, 1048, 1220
Hpy8I	GTNNAC	3 cut(s)	394, 532, 724
Hpy99I	CGWCG	2 cut(s)	1006, 1031
HpyAV	CCTTC	3 cut(s)	508, 698, 1000
HpyCH4III	ACNGT	2 cut(s)	1072, 1108
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 194, 317, 338, 379, 407, 683, 1124
HpyF3I	CTNAG	7 cut(s)	360, 378, 441, 636, 761, 794, 882
Hsp92II	CATG	2 cut(s)	17, 155
Kpn2I	TCCGGA	1 cut(s)	1219
KspI	CCGCGG	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	38, 815, 961
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	8 cut(s)	29, 631, 664, 835, 863, 904, 1105, 1127
LweI	GCATC	3 cut(s)	421, 778, 1247
MaeI	CTAG	4 cut(s)	141, 614, 923, 1261
MaeIII	GTNAC	3 cut(s)	50, 295, 1066
MalI	GATC	3 cut(s)	40, 817, 963
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	3 cut(s)	38, 815, 961
MboII	GAAGA	7 cut(s)	126, 165, 523, 554, 574, 725, 1076
MhlI	GDGCHC	1 cut(s)	941
MluCI	AATT	6 cut(s)	95, 419, 620, 650, 778, 1141
MlyI	GAGTC	3 cut(s)	140, 389, 772
MmeI	TCCRAC	1 cut(s)	787
MroI	TCCGGA	1 cut(s)	1219
MroXI	GAANNNNTTC	1 cut(s)	1176
MseI	TTAA	2 cut(s)	690, 1164
MslI	CAYNNNNRTG	1 cut(s)	715
MspA1I	CMGCKG	3 cut(s)	467, 729, 1118
MspI	CCGG	6 cut(s)	189, 551, 858, 1133, 1220, 1235
MspR9I	CCNGG	3 cut(s)	190, 552, 1183
MvaI	CCWGG	1 cut(s)	1183
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	8 cut(s)	14, 194, 317, 338, 379, 407, 683, 1124
NciI	CCSGG	2 cut(s)	190, 552
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	3 cut(s)	38, 815, 961
NlaIII	CATG	2 cut(s)	17, 155
NlaIV	GGNNCC	4 cut(s)	345, 588, 823, 1137
NmeAIII	GCCGAG	2 cut(s)	893, 982
NmuCI	GTSAC	2 cut(s)	50, 295
NspV	TTCGAA	1 cut(s)	1190
PaqCI	CACCTGC	1 cut(s)	1102
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	1 cut(s)	1172
PflFI	GACNNNGTC	1 cut(s)	1025
PleI	GAGTC	3 cut(s)	139, 389, 771
PpsI	GAGTC	3 cut(s)	139, 389, 771
PpuMI	RGGWCCY	1 cut(s)	1021
Psp5II	RGGWCCY	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	1181
PspGI	CCWGG	1 cut(s)	1181
PspN4I	GGNNCC	4 cut(s)	345, 588, 823, 1137
PspPI	GGNCC	3 cut(s)	7, 707, 1021
PspPPI	RGGWCCY	1 cut(s)	1021
PsrI	GAACNNNNNNTAC	2 cut(s)	255, 287
PstI	CTGCAG	5 cut(s)	313, 649, 853, 1099, 1123
PstNI	CAGNNNCTG	2 cut(s)	367, 1070
PsyI	GACNNNGTC	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	1118
RsaI	GTAC	2 cut(s)	487, 1149
RsaNI	GTAC	2 cut(s)	486, 1148
RseI	CAYNNNNRTG	1 cut(s)	715
SacII	CCGCGG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	690, 1164
Sau3AI	GATC	3 cut(s)	38, 815, 961
Sau96I	GGNCC	3 cut(s)	7, 707, 1021
SchI	GAGTC	3 cut(s)	140, 389, 772
ScrFI	CCNGG	3 cut(s)	190, 552, 1183
SduI	GDGCHC	1 cut(s)	941
SfaNI	GCATC	3 cut(s)	421, 778, 1247
SfcI	CTRYAG	6 cut(s)	309, 645, 849, 1095, 1107, 1119
Sfr303I	CCGCGG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	1190
SgrBI	CCGCGG	1 cut(s)	468
SinI	GGWCC	2 cut(s)	707, 1021
SmiMI	CAYNNNNRTG	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	922
Sse9I	AATT	6 cut(s)	95, 419, 620, 650, 778, 1141
SspMI	CTAG	4 cut(s)	141, 614, 923, 1261
StyD4I	CCNGG	3 cut(s)	188, 550, 1181
StyI	CCWWGG	4 cut(s)	151, 198, 737, 838
TaaI	ACNGT	2 cut(s)	1072, 1108
TaqI	TCGA	3 cut(s)	964, 1029, 1190
TasI	AATT	6 cut(s)	95, 419, 620, 650, 778, 1141
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	1172
Tru1I	TTAA	2 cut(s)	690, 1164
Tru9I	TTAA	2 cut(s)	690, 1164
TscAI	CASTG	3 cut(s)	78, 240, 765
TseFI	GTSAC	2 cut(s)	50, 295
TseI	GCWGC	9 cut(s)	17, 644, 677, 848, 851, 917, 1115, 1118, 1255
Tsp45I	GTSAC	2 cut(s)	50, 295
TspDTI	ATGAA	2 cut(s)	126, 598
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	3 cut(s)	78, 240, 765
Tth111I	GACNNNGTC	1 cut(s)	1025
VpaK11BI	GGWCC	2 cut(s)	707, 1021
XapI	RAATTY	4 cut(s)	95, 620, 778, 1141
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	4 cut(s)	141, 614, 923, 1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.