Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Forward (+)

16428708 .. 16431909

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGATAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCACTACCCAAGTTCTCAAGCTCCACTAGCTTTAGTGCTAAAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCTTCTGTTTTCAATGCTGGGATTGCCAAGGCTTTGACATATGAAGAGGCATTGGGGCAGGCAGTGAGTGCAGCAAATGGAGACTTTGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTACAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTCCCTTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGAGTGCTTATGCAAAATTGGGTGAAGATGCAAATGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATAAGGCAAGTAGGTAGTCCGGATATCCGAGGTCTGGGCAAGAAGGCAGTGCCAATTGTTTATAAAGGGGAAGATAAGCCGGGCTTCTTAAAGAAGCTCTCTTTGAAGTTCAAGGAACCAGTGAATACTACATTGTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGTGGCCTTCCTTGGGTACCACCACCAAAAGCACTGGGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACCGGGCTGGGTTTATTGGCTTTTACTGAGGTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCTGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCTTAACCACCAAGGTTGCCCCAAAGGAGCTTTTGGGTGACATAAAGGAAATCGGAACAGCTCTTCTACCTGTACCTGTGATTGGCAAGGCTCTTCCTGCACCTGAAGAGGCAAGTCCAGCCCCCACTGCTGCTGATACTGGAGTGAAAGCAGAAGCTGCACCGGAGCCTAAAGTAGAAGCAGCTGCAGAACCTGTGCCGGAGCCTAAAGTAGAAGCAGCTGCAGAACCTGCCCCTGAGATAAATTCCGTTCCCAAAGCAGAAGTTAAAAAAGAATCATTTCCTGGGATTTCAAAATCCCTTTCTCCATTCCCCTATTATCCAGATTTCAAGCCTCCAACATCTCCGCGCCCATCCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

458

Amino Acids

47.39

Weight (kDa)

5.38

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	1246
Acc65I	GGTACC	1 cut(s)	757
AccB1I	GGYRCC	2 cut(s)	757, 836
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccII	CGCG	1 cut(s)	1357
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	2 cut(s)	800, 1355
AcsI	RAATTY	2 cut(s)	71, 1252
AcuI	CTGAAG	1 cut(s)	1134
AfaI	GTAC	3 cut(s)	759, 942, 1083
AfiI	CCNNNNNNNGG	6 cut(s)	520, 732, 733, 754, 922, 1091
AgsI	TTSAA	8 cut(s)	199, 279, 410, 592, 598, 688, 1302, 1339
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	3 cut(s)	478, 627, 1291
Alw21I	GWGCWC	2 cut(s)	289, 478
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	3 cut(s)	1166, 1202, 1238
Ama87I	CYCGRG	1 cut(s)	726
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	6, 745
ApoI	RAATTY	2 cut(s)	71, 1252
Asp700I	GAANNNNTTC	1 cut(s)	1287
Asp718I	GGTACC	1 cut(s)	757
AspLEI	GCGC	1 cut(s)	1359
AspS9I	GGNCC	3 cut(s)	7, 722, 976
AsuC2I	CCSGG	2 cut(s)	567, 874
AsuHPI	GGTGA	4 cut(s)	59, 452, 748, 1058
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	2 cut(s)	722, 976
BaeI	ACNNNNGTAYC	2 cut(s)	1137, 1170
BanI	GGYRCC	2 cut(s)	757, 836
BanII	GRGCYC	3 cut(s)	289, 833, 929
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	289, 478
BbvCI	CCTCAGC	1 cut(s)	972
BccI	CCATC	6 cut(s)	85, 356, 635, 704, 726, 1369
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	3 cut(s)	480, 629, 1293
BciVI	GTATCC	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	567, 874
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	2 cut(s)	120, 938
BfmI	CTRYAG	3 cut(s)	864, 1194, 1230
BfuAI	ACCTGC	1 cut(s)	1246
BfuI	GTATCC	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	928
Bme1390I	CCNGG	5 cut(s)	480, 567, 629, 874, 1293
Bme18I	GGWCC	2 cut(s)	722, 976
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	7, 722, 976
BmiI	GGNNCC	6 cut(s)	603, 724, 759, 838, 1176, 1212
BmrFI	CCNGG	5 cut(s)	480, 567, 629, 874, 1293
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	785
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	1170
Bpu10I	CCTNAGC	3 cut(s)	393, 832, 972
Bpu1102I	GCTNAGC	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	567, 874
BsaJI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 1020, 1292
BsaWI	WCCGGW	3 cut(s)	505, 978, 1171
Bsc4I	CCNNNNNNNGG	6 cut(s)	520, 732, 733, 754, 922, 1091
Bse1I	ACTGG	4 cut(s)	605, 660, 780, 1153
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	3 cut(s)	480, 629, 1293
BseDI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 1020, 1292
BseGI	GGATG	3 cut(s)	624, 737, 1361
BseLI	CCNNNNNNNGG	6 cut(s)	520, 732, 733, 754, 922, 1091
BseMII	CTCAG	6 cut(s)	654, 846, 888, 942, 963, 1236
BseNI	ACTGG	4 cut(s)	605, 660, 780, 1153
BseYI	CCCAGC	2 cut(s)	203, 877
BsgI	GTGCAG	5 cut(s)	276, 735, 918, 1092, 1152
Bsh1236I	CGCG	1 cut(s)	1357
BshFI	GGCC	2 cut(s)	8, 747
BshNI	GGYRCC	2 cut(s)	757, 836
BsiHKAI	GWGCWC	2 cut(s)	289, 478
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	6 cut(s)	506, 566, 873, 979, 1172, 1208
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	6 cut(s)	520, 732, 733, 754, 922, 1091
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	8, 747
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	4 cut(s)	289, 478, 833, 929
Bsp13I	TCCGGA	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	800, 1355
BspANI	GGCC	2 cut(s)	8, 747
BspCNI	CTCAG	6 cut(s)	655, 845, 889, 941, 964, 1237
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	1357
BspLI	GGNNCC	6 cut(s)	603, 724, 759, 838, 1176, 1212
BspMAI	CTGCAG	3 cut(s)	868, 1198, 1234
BspMI	ACCTGC	1 cut(s)	1246
BspQI	GCTCTTC	2 cut(s)	1077, 1107
BspT107I	GGYRCC	2 cut(s)	757, 836
BsrI	ACTGG	4 cut(s)	605, 660, 780, 1153
BssECI	CCNNGG	9 cut(s)	166, 213, 479, 514, 727, 752, 853, 1020, 1292
BssT1I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Bst2UI	CCWGG	3 cut(s)	480, 629, 1293
Bst4CI	ACNGT	2 cut(s)	676, 945
Bst6I	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
BstAPI	GCANNNNNTGC	3 cut(s)	254, 1166, 1238
BstC8I	GCNNGC	3 cut(s)	22, 246, 952
BstDEI	CTNAG	9 cut(s)	156, 393, 417, 663, 832, 897, 928, 972, 1245
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	624, 737, 1361
BstFNI	CGCG	1 cut(s)	1357
BstHHI	GCGC	1 cut(s)	1359
BstMAI	GTCTC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	480, 629, 1293
BstSCI	CCNGG	5 cut(s)	478, 565, 627, 872, 1291
BstSFI	CTRYAG	3 cut(s)	864, 1194, 1230
BstUI	CGCG	1 cut(s)	1357
BstV2I	GAAGAC	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	8, 747
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	624, 737, 1361
BtsI	GCAGTG	4 cut(s)	80, 255, 540, 1134
BtsIMutI	CAGTG	7 cut(s)	80, 255, 540, 612, 672, 773, 1134
BveI	ACCTGC	1 cut(s)	1246
Cac8I	GCNNGC	3 cut(s)	22, 246, 952
CaiI	CAGNNNCTG	3 cut(s)	1166, 1202, 1238
CfoI	GCGC	1 cut(s)	1359
Cfr13I	GGNCC	3 cut(s)	7, 722, 976
Csp6I	GTAC	3 cut(s)	758, 941, 1082
CspCI	CAANNNNNGTGG	2 cut(s)	1006, 1041
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	3 cut(s)	758, 941, 1082
DdeI	CTNAG	9 cut(s)	156, 393, 417, 663, 832, 897, 928, 972, 1245
Eam1104I	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
EarI	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Eco24I	GRGCYC	3 cut(s)	289, 833, 929
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	722, 976
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	1134
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	7, 722
EcoRII	CCWGG	3 cut(s)	478, 627, 1291
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	3 cut(s)	289, 833, 929
ErhI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	226
FokI	GGATG	3 cut(s)	611, 744, 1348
FriOI	GRGCYC	3 cut(s)	289, 833, 929
FspBI	CTAG	2 cut(s)	120, 938
GlaI	GCGC	1 cut(s)	1358
GsaI	CCCAGC	2 cut(s)	207, 881
GsuI	CTGGAG	1 cut(s)	1170
HaeIII	GGCC	2 cut(s)	8, 747
HapII	CCGG	6 cut(s)	506, 566, 873, 979, 1172, 1208
HhaI	GCGC	1 cut(s)	1359
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	1357
HinP1I	GCGC	1 cut(s)	1357
HindIII	AAGCTT	2 cut(s)	22, 135
HinfI	GANTC	4 cut(s)	275, 388, 410, 1283
HpaII	CCGG	6 cut(s)	506, 566, 873, 979, 1172, 1208
HphI	GGTGA	4 cut(s)	59, 452, 748, 1058
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	515, 652, 824, 1064
Hpy188III	TCNNGA	3 cut(s)	290, 506, 1331
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	523, 713, 758
HpyCH4III	ACNGT	2 cut(s)	676, 945
HpyF3I	CTNAG	9 cut(s)	156, 393, 417, 663, 832, 897, 928, 972, 1245
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	1357
Kpn2I	TCCGGA	1 cut(s)	505
KpnI	GGTACC	1 cut(s)	761
LguI	GCTCTTC	2 cut(s)	1077, 1107
LmnI	GCTCC	5 cut(s)	119, 284, 1036, 1174, 1210
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	120, 938
MaeIII	GTNAC	3 cut(s)	372, 670, 1046
MboII	GAAGA	7 cut(s)	180, 242, 455, 569, 1064, 1094, 1127
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	4 cut(s)	289, 478, 833, 929
MluCI	AATT	5 cut(s)	71, 327, 434, 540, 1252
MmeI	TCCRAC	3 cut(s)	802, 940, 1370
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	1287
MseI	TTAA	4 cut(s)	312, 575, 1013, 1275
MspA1I	CMGCKG	3 cut(s)	932, 1193, 1229
MspI	CCGG	6 cut(s)	506, 566, 873, 979, 1172, 1208
MspR9I	CCNGG	5 cut(s)	480, 567, 629, 874, 1293
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	480, 629, 1293
MvnI	CGCG	1 cut(s)	1357
NciI	CCSGG	2 cut(s)	567, 874
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	6 cut(s)	603, 724, 759, 838, 1176, 1212
NmuCI	GTSAC	3 cut(s)	372, 670, 1046
NsiI	ATGCAT	1 cut(s)	457
PciSI	GCTCTTC	2 cut(s)	1077, 1107
PdmI	GAANNNNTTC	1 cut(s)	1287
PfeI	GAWTC	4 cut(s)	275, 388, 410, 1283
PflMI	CCANNNNNTGG	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	478, 627, 1291
PspFI	CCCAGC	2 cut(s)	203, 877
PspGI	CCWGG	3 cut(s)	478, 627, 1291
PspN4I	GGNNCC	6 cut(s)	603, 724, 759, 838, 1176, 1212
PspPI	GGNCC	3 cut(s)	7, 722, 976
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	3 cut(s)	868, 1198, 1234
PstNI	CAGNNNCTG	3 cut(s)	1166, 1202, 1238
PvuII	CAGCTG	3 cut(s)	932, 1193, 1229
RsaI	GTAC	3 cut(s)	759, 942, 1083
RsaNI	GTAC	3 cut(s)	758, 941, 1082
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	2 cut(s)	1077, 1107
SaqAI	TTAA	4 cut(s)	312, 575, 1013, 1275
Sau96I	GGNCC	3 cut(s)	7, 722, 976
ScrFI	CCNGG	5 cut(s)	480, 567, 629, 874, 1293
SduI	GDGCHC	4 cut(s)	289, 478, 833, 929
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	3 cut(s)	864, 1194, 1230
SinI	GGWCC	2 cut(s)	722, 976
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	5 cut(s)	71, 327, 434, 540, 1252
SsiI	CCGC	2 cut(s)	800, 1355
SspMI	CTAG	2 cut(s)	120, 938
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	5 cut(s)	478, 565, 627, 872, 1291
StyI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
TaaI	ACNGT	2 cut(s)	676, 945
TasI	AATT	5 cut(s)	71, 327, 434, 540, 1252
TatI	WGTACW	1 cut(s)	940
TfiI	GAWTC	4 cut(s)	275, 388, 410, 1283
Tru1I	TTAA	4 cut(s)	312, 575, 1013, 1275
Tru9I	TTAA	4 cut(s)	312, 575, 1013, 1275
TscAI	CASTG	7 cut(s)	87, 255, 540, 612, 679, 780, 1141
TseFI	GTSAC	3 cut(s)	372, 670, 1046
Tsp45I	GTSAC	3 cut(s)	372, 670, 1046
TspDTI	ATGAA	3 cut(s)	141, 243, 613
TspGWI	ACGGA	1 cut(s)	1246
TspRI	CASTG	7 cut(s)	87, 255, 540, 612, 679, 780, 1141
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	2 cut(s)	722, 976
XapI	RAATTY	2 cut(s)	71, 1252
XmnI	GAANNNNTTC	1 cut(s)	1287
XspI	CTAG	2 cut(s)	120, 938
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.