RchiOBHm_Chr1g0359191

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010301
Physical Location & Seq
Reverse (-)
51233659 .. 51237307
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58425

Sequence Viewer

Length: 1338 bp
ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGACAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCGCTACCCAAGTTCTCAAGCTCCACTAGCTTTAGTGCTAAAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCTTCTGTTTTCAATGCTGGGATTGCCAAGGCTTTGACATATGAAGAGGTATTGGGGCAGTCAGTGAGTACAGCAAATGGAGACTTTGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTGCAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTTCCGTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGAGTGCTTATGCAAAATTGGGTGAAGATGCAAAAGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATAAGGCAAGTGGGTAGTCCGGATATCCGAGGTCTGGGAAAGAAGGCAGTGCCAATTGTTTATAAAGGGGAAGATAAGCCGGGCTTCTTAAAGAAGCTCTCTTTGAAGTTCAAGGAACCAGAGAATACTACATTTTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGCGGCCTTCCTTGGATACCACCATCAAAAGCACCGAGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACCGGGCTGGGTTTATTGGCTTTTACTGAGCTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCCGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCATAACCACCAAGGTTGCCCCAAAGGAGCTTTTGGGTGACATAAAGGAAATCGGAATAGCTCTTCTACCTGTACCTGTGATTAGCAAGGCTCTTCCTGCACCTGAAGAGGCAAGTCCGGCCCCCACTGCTGCTGATACTGGAGTGAAAGCAGAAGCTGCACCGGAACCTAAAGTAGAAGCAGCTGCAGAACCTGCCCCTGAGATAAATTCCGTTCCCAAAGCAGAAGTTAAAAAAGAATCATTTCCTGGGATTTCAAAATCCCTTTCTCCATTCCCCTATTATCCAGATTTCAAGCCTCCAACATCTCCGCGCCCATCCCAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

445

Amino Acids

46.37

Weight (kDa)

5.63

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 1210
AccB1I GGYRCC 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 922
AccII CGCG 1 cut(s) 1321
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 3 cut(s) 744, 800, 1319
AcsI RAATTY 2 cut(s) 71, 1216
AcuI CTGAAG 1 cut(s) 1134
AfaI GTAC 3 cut(s) 256, 942, 1083
AfiI CCNNNNNNNGG 5 cut(s) 520, 732, 733, 922, 978
AgsI TTSAA 8 cut(s) 199, 279, 410, 592, 598, 688, 1266, 1303
AhlI ACTAGT 1 cut(s) 937
AjnI CCWGG 3 cut(s) 478, 627, 1255
Alw21I GWGCWC 2 cut(s) 289, 478
Alw26I GTCTC 1 cut(s) 261
AlwNI CAGNNNCTG 2 cut(s) 1166, 1202
Ama87I CYCGRG 1 cut(s) 726
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 3 cut(s) 6, 745, 1128
ApeKI GCWGC 9 cut(s) 17, 692, 863, 866, 932, 1139, 1166, 1190, 1193
ApoI RAATTY 2 cut(s) 71, 1216
Asp700I GAANNNNTTC 1 cut(s) 1251
AspLEI GCGC 1 cut(s) 1323
AspS9I GGNCC 4 cut(s) 7, 722, 976, 1129
AsuC2I CCSGG 2 cut(s) 567, 874
AsuHPI GGTGA 4 cut(s) 59, 452, 748, 1058
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 2 cut(s) 722, 976
BaeI ACNNNNGTAYC 2 cut(s) 1137, 1170
BanI GGYRCC 1 cut(s) 836
BanII GRGCYC 3 cut(s) 289, 833, 929
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 289, 478
BbvI GCAGC 9 cut(s) 29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BccI CCATC 7 cut(s) 85, 356, 635, 704, 726, 772, 1333
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 3 cut(s) 480, 629, 1257
BciVI GTATCC 2 cut(s) 750, 796
BcnI CCSGG 2 cut(s) 567, 874
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 3 cut(s) 120, 902, 938
BfmI CTRYAG 2 cut(s) 864, 1194
BfuAI ACCTGC 1 cut(s) 1210
BfuI GTATCC 2 cut(s) 750, 796
BglI GCCNNNNNGGC 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 928
Bme1390I CCNGG 5 cut(s) 480, 567, 629, 874, 1257
Bme18I GGWCC 2 cut(s) 722, 976
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 4 cut(s) 7, 722, 976, 1129
BmiI GGNNCC 5 cut(s) 603, 724, 838, 1131, 1176
BmrFI CCNGG 5 cut(s) 480, 567, 629, 874, 1257
BmsI GCATC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 1170
Bpu10I CCTNAGC 2 cut(s) 393, 832
Bpu1102I GCTNAGC 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 2 cut(s) 567, 874
BsaWI WCCGGW 3 cut(s) 505, 978, 1171
Bsc4I CCNNNNNNNGG 5 cut(s) 520, 732, 733, 922, 978
Bse1I ACTGG 2 cut(s) 660, 1153
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 3 cut(s) 480, 629, 1257
BseGI GGATG 3 cut(s) 624, 737, 1325
BseLI CCNNNNNNNGG 5 cut(s) 520, 732, 733, 922, 978
BseMII CTCAG 5 cut(s) 654, 846, 888, 942, 1200
BseNI ACTGG 2 cut(s) 660, 1153
BseXI GCAGC 9 cut(s) 29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BseYI CCCAGC 2 cut(s) 203, 877
BsgI GTGCAG 4 cut(s) 735, 918, 1092, 1152
Bsh1236I CGCG 1 cut(s) 1321
BshFI GGCC 3 cut(s) 8, 747, 1130
BshNI GGYRCC 1 cut(s) 836
BsiHKAI GWGCWC 2 cut(s) 289, 478
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 6 cut(s) 506, 566, 873, 979, 1127, 1172
BslI CCNNNNNNNGG 5 cut(s) 520, 732, 733, 922, 978
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 3 cut(s) 8, 747, 1130
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 4 cut(s) 289, 478, 833, 929
Bsp13I TCCGGA 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 928
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 3 cut(s) 744, 800, 1319
BspANI GGCC 3 cut(s) 8, 747, 1130
BspCNI CTCAG 5 cut(s) 655, 845, 889, 941, 1201
BspEI TCCGGA 1 cut(s) 505
BspFNI CGCG 1 cut(s) 1321
BspLI GGNNCC 5 cut(s) 603, 724, 838, 1131, 1176
BspMAI CTGCAG 2 cut(s) 868, 1198
BspMI ACCTGC 1 cut(s) 1210
BspQI GCTCTTC 2 cut(s) 1077, 1107
BspT107I GGYRCC 1 cut(s) 836
BsrI ACTGG 2 cut(s) 660, 1153
BssT1I CCWWGG 5 cut(s) 166, 213, 752, 853, 1020
Bst2UI CCWGG 3 cut(s) 480, 629, 1257
Bst4CI ACNGT 2 cut(s) 676, 945
Bst6I CTCTTC 4 cut(s) 225, 1077, 1107, 1110
BstAPI GCANNNNNTGC 2 cut(s) 1166, 1202
BstC8I GCNNGC 2 cut(s) 22, 952
BstDEI CTNAG 8 cut(s) 156, 393, 417, 663, 832, 897, 928, 1209
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 624, 737, 1325
BstFNI CGCG 1 cut(s) 1321
BstHHI GCGC 1 cut(s) 1323
BstMAI GTCTC 1 cut(s) 261
BstNI CCWGG 3 cut(s) 480, 629, 1257
BstSCI CCNGG 5 cut(s) 478, 565, 627, 872, 1255
BstSFI CTRYAG 2 cut(s) 864, 1194
BstUI CGCG 1 cut(s) 1321
BstV1I GCAGC 9 cut(s) 29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BstV2I GAAGAC 1 cut(s) 180
BsuI GTATCC 2 cut(s) 750, 796
BsuRI GGCC 3 cut(s) 8, 747, 1130
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 624, 737, 1325
BtsI GCAGTG 3 cut(s) 80, 540, 1134
BtsIMutI CAGTG 5 cut(s) 80, 255, 540, 672, 1134
BveI ACCTGC 1 cut(s) 1210
Cac8I GCNNGC 2 cut(s) 22, 952
CaiI CAGNNNCTG 2 cut(s) 1166, 1202
CfoI GCGC 1 cut(s) 1323
Cfr13I GGNCC 4 cut(s) 7, 722, 976, 1129
Csp6I GTAC 3 cut(s) 255, 941, 1082
CspCI CAANNNNNGTGG 2 cut(s) 1006, 1041
CviAII CATG 1 cut(s) 167
CviQI GTAC 3 cut(s) 255, 941, 1082
DdeI CTNAG 8 cut(s) 156, 393, 417, 663, 832, 897, 928, 1209
Eam1104I CTCTTC 4 cut(s) 225, 1077, 1107, 1110
EarI CTCTTC 4 cut(s) 225, 1077, 1107, 1110
Ecl136II GAGCTC 1 cut(s) 287
Eco130I CCWWGG 5 cut(s) 166, 213, 752, 853, 1020
Eco24I GRGCYC 3 cut(s) 289, 833, 929
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 722, 976
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 1134
Eco88I CYCGRG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 287
EcoO109I RGGNCCY 2 cut(s) 7, 722
EcoRII CCWGG 3 cut(s) 478, 627, 1255
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 5 cut(s) 166, 213, 752, 853, 1020
EcoT38I GRGCYC 3 cut(s) 289, 833, 929
ErhI CCWWGG 5 cut(s) 166, 213, 752, 853, 1020
FaeI CATG 1 cut(s) 170
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 554, 586
FatI CATG 1 cut(s) 166
FauNDI CATATG 1 cut(s) 226
FokI GGATG 3 cut(s) 611, 744, 1312
FriOI GRGCYC 3 cut(s) 289, 833, 929
FspBI CTAG 3 cut(s) 120, 902, 938
GlaI GCGC 1 cut(s) 1322
GsaI CCCAGC 2 cut(s) 207, 881
GsuI CTGGAG 1 cut(s) 1170
HaeIII GGCC 3 cut(s) 8, 747, 1130
HapII CCGG 6 cut(s) 506, 566, 873, 979, 1127, 1172
HhaI GCGC 1 cut(s) 1323
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 1321
HinP1I GCGC 1 cut(s) 1321
HindIII AAGCTT 2 cut(s) 22, 135
HinfI GANTC 4 cut(s) 275, 388, 410, 1247
HpaII CCGG 6 cut(s) 506, 566, 873, 979, 1127, 1172
HphI GGTGA 4 cut(s) 59, 452, 748, 1058
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 4 cut(s) 515, 652, 824, 1064
Hpy188III TCNNGA 3 cut(s) 290, 506, 1295
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 523, 713, 758
HpyCH4III ACNGT 2 cut(s) 676, 945
HpyF3I CTNAG 8 cut(s) 156, 393, 417, 663, 832, 897, 928, 1209
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 1321
Kpn2I TCCGGA 1 cut(s) 505
LguI GCTCTTC 2 cut(s) 1077, 1107
LmnI GCTCC 3 cut(s) 119, 284, 1036
Lsp1109I GCAGC 9 cut(s) 29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
LweI GCATC 1 cut(s) 436
MaeI CTAG 3 cut(s) 120, 902, 938
MaeIII GTNAC 4 cut(s) 47, 372, 670, 1046
MboII GAAGA 7 cut(s) 180, 242, 455, 569, 1064, 1094, 1127
MfeI CAATTG 1 cut(s) 540
MhlI GDGCHC 4 cut(s) 289, 478, 833, 929
MluCI AATT 5 cut(s) 71, 327, 434, 540, 1216
MmeI TCCRAC 3 cut(s) 802, 940, 1334
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 1251
MseI TTAA 3 cut(s) 312, 575, 1239
MspA1I CMGCKG 2 cut(s) 932, 1193
MspI CCGG 6 cut(s) 506, 566, 873, 979, 1127, 1172
MspR9I CCNGG 5 cut(s) 480, 567, 629, 874, 1257
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 3 cut(s) 480, 629, 1257
MvnI CGCG 1 cut(s) 1321
NciI CCSGG 2 cut(s) 567, 874
NcoI CCATGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 226
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 5 cut(s) 603, 724, 838, 1131, 1176
NmeAIII GCCGAG 1 cut(s) 997
NmuCI GTSAC 4 cut(s) 47, 372, 670, 1046
PciSI GCTCTTC 2 cut(s) 1077, 1107
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 4 cut(s) 275, 388, 410, 1247
PflMI CCANNNNNTGG 1 cut(s) 922
PfoI TCCNGGA 1 cut(s) 627
PpuMI RGGWCCY 1 cut(s) 722
PsiI TTATAA 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 3 cut(s) 478, 627, 1255
PspFI CCCAGC 2 cut(s) 203, 877
PspGI CCWGG 3 cut(s) 478, 627, 1255
PspN4I GGNNCC 5 cut(s) 603, 724, 838, 1131, 1176
PspPI GGNCC 4 cut(s) 7, 722, 976, 1129
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 2 cut(s) 868, 1198
PstNI CAGNNNCTG 2 cut(s) 1166, 1202
PvuII CAGCTG 2 cut(s) 932, 1193
RsaI GTAC 3 cut(s) 256, 942, 1083
RsaNI GTAC 3 cut(s) 255, 941, 1082
SacI GAGCTC 1 cut(s) 289
SapI GCTCTTC 2 cut(s) 1077, 1107
SaqAI TTAA 3 cut(s) 312, 575, 1239
Sau96I GGNCC 4 cut(s) 7, 722, 976, 1129
ScrFI CCNGG 5 cut(s) 480, 567, 629, 874, 1257
SduI GDGCHC 4 cut(s) 289, 478, 833, 929
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 2 cut(s) 864, 1194
SinI GGWCC 2 cut(s) 722, 976
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 937
Sse9I AATT 5 cut(s) 71, 327, 434, 540, 1216
SsiI CCGC 3 cut(s) 744, 800, 1319
SspMI CTAG 3 cut(s) 120, 902, 938
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 5 cut(s) 478, 565, 627, 872, 1255
StyI CCWWGG 5 cut(s) 166, 213, 752, 853, 1020
TaaI ACNGT 2 cut(s) 676, 945
TasI AATT 5 cut(s) 71, 327, 434, 540, 1216
TatI WGTACW 2 cut(s) 254, 940
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 4 cut(s) 275, 388, 410, 1247
Tru1I TTAA 3 cut(s) 312, 575, 1239
Tru9I TTAA 3 cut(s) 312, 575, 1239
TscAI CASTG 5 cut(s) 87, 255, 540, 679, 1141
TseFI GTSAC 4 cut(s) 47, 372, 670, 1046
TseI GCWGC 9 cut(s) 17, 692, 863, 866, 932, 1139, 1166, 1190, 1193
Tsp45I GTSAC 4 cut(s) 47, 372, 670, 1046
TspDTI ATGAA 4 cut(s) 141, 243, 613, 1000
TspGWI ACGGA 2 cut(s) 351, 1210
TspRI CASTG 5 cut(s) 87, 255, 540, 679, 1141
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 2 cut(s) 722, 976
XapI RAATTY 2 cut(s) 71, 1216
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 3 cut(s) 120, 902, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.