Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

51135260 .. 51138428

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGACAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCGCTACCCAAGTTCTCAAGCTCCACTAGCTTTAGTGCTAAAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCTTCTGTTTTCAATGCTGGGATTGCCAAGGCTTTGACATATGAAGAGGTATTGGGGCAGTCAGTGAGTACAGCAAATGGAGACTTTGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTGCAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTTCCTTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGAGTGCTTATGCAAAATTGGGTGAAGATGCAAAAGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATCAGGCAAGTAGGTAGTCCGGATATCCGAGGTCTGAGGAAGAAGGCGGTGCCAATTGTTTATAAAGGGGAAGATAAGCCGGGCTTCTTAAAGAAGCTCTCTTTGAAGTTCAAGGAACCAGAGAATACTACATTTTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGCGGCCTTCCTTGGATACCACCATCAAAAGCACTGAGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACCGGGCTGGGTTTATTGGCTTTTACTGAGCTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCCGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCTTAACCACCAAGGTTGCCCCAAAGGAGTTTTTGGGTGACATAAAGGAAATCGGAACAGCTCTTCTACCTGTACCTGTGATTAGCAAGGCTCTTCCTGCACCTGAAGAGGCAAGGCCGGCCCCCACTGCTGCTGATACTGGAGTGAAAGCAGAAGCTGCACCGGAACCTAAAGTAGAAGCAGCTGCAGAACCTGCCCCTGAGATAAATTCCGTTTCCAAAGCAGAAGTTAAAAAAGAATCATTTCCTGGGATTTCAAAATCCCTTTCTCCATTCCCCTATTATCCAGATTTCAAGCCTCCAACATCTCCGCGCCCATCCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

445

Amino Acids

46.57

Weight (kDa)

6.16

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	1210
AccB1I	GGYRCC	2 cut(s)	535, 836
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccII	CGCG	1 cut(s)	1321
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	4 cut(s)	533, 744, 800, 1319
AcsI	RAATTY	2 cut(s)	71, 1216
AcuI	CTGAAG	1 cut(s)	1134
AfaI	GTAC	3 cut(s)	256, 942, 1083
AfiI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
AgsI	TTSAA	8 cut(s)	199, 279, 410, 592, 598, 688, 1266, 1303
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	3 cut(s)	478, 627, 1255
Alw21I	GWGCWC	2 cut(s)	289, 478
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1202
Ama87I	CYCGRG	1 cut(s)	726
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	4 cut(s)	6, 745, 1124, 1128
ApeKI	GCWGC	9 cut(s)	17, 692, 863, 866, 932, 1139, 1166, 1190, 1193
ApoI	RAATTY	2 cut(s)	71, 1216
Asp700I	GAANNNNTTC	1 cut(s)	1251
AspLEI	GCGC	1 cut(s)	1323
AspS9I	GGNCC	4 cut(s)	7, 722, 976, 1129
AsuC2I	CCSGG	2 cut(s)	567, 874
AsuHPI	GGTGA	4 cut(s)	59, 452, 748, 1058
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	2 cut(s)	722, 976
BaeI	ACNNNNGTAYC	2 cut(s)	1137, 1170
BanI	GGYRCC	2 cut(s)	535, 836
BanII	GRGCYC	3 cut(s)	289, 833, 929
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	289, 478
BbvI	GCAGC	9 cut(s)	29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BccI	CCATC	7 cut(s)	85, 356, 635, 704, 726, 772, 1333
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	3 cut(s)	480, 629, 1257
BciVI	GTATCC	2 cut(s)	750, 796
BcnI	CCSGG	2 cut(s)	567, 874
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	3 cut(s)	120, 902, 938
BfmI	CTRYAG	2 cut(s)	864, 1194
BfuAI	ACCTGC	1 cut(s)	1210
BfuI	GTATCC	2 cut(s)	750, 796
BglI	GCCNNNNNGGC	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	928
Bme1390I	CCNGG	5 cut(s)	480, 567, 629, 874, 1257
Bme18I	GGWCC	2 cut(s)	722, 976
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	4 cut(s)	7, 722, 976, 1129
BmiI	GGNNCC	6 cut(s)	537, 603, 724, 838, 1131, 1176
BmrFI	CCNGG	5 cut(s)	480, 567, 629, 874, 1257
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	1170
Bpu10I	CCTNAGC	2 cut(s)	393, 832
Bpu1102I	GCTNAGC	1 cut(s)	928
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	567, 874
BsaWI	WCCGGW	3 cut(s)	505, 978, 1171
Bsc4I	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
Bse118I	RCCGGY	1 cut(s)	1126
Bse1I	ACTGG	2 cut(s)	660, 1153
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	3 cut(s)	480, 629, 1257
BseGI	GGATG	3 cut(s)	624, 737, 1325
BseLI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
BseMII	CTCAG	7 cut(s)	512, 654, 767, 846, 888, 942, 1200
BseNI	ACTGG	2 cut(s)	660, 1153
BseXI	GCAGC	9 cut(s)	29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BseYI	CCCAGC	2 cut(s)	203, 877
BsgI	GTGCAG	4 cut(s)	735, 918, 1092, 1152
Bsh1236I	CGCG	1 cut(s)	1321
BshFI	GGCC	4 cut(s)	8, 747, 1126, 1130
BshNI	GGYRCC	2 cut(s)	535, 836
BsiHKAI	GWGCWC	2 cut(s)	289, 478
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	6 cut(s)	506, 566, 873, 979, 1127, 1172
BslI	CCNNNNNNNGG	4 cut(s)	732, 733, 922, 978
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	8, 747, 1126, 1130
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	4 cut(s)	289, 478, 833, 929
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	486
Bsp1720I	GCTNAGC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	4 cut(s)	533, 744, 800, 1319
BspANI	GGCC	4 cut(s)	8, 747, 1126, 1130
BspCNI	CTCAG	7 cut(s)	513, 655, 768, 845, 889, 941, 1201
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	1321
BspLI	GGNNCC	6 cut(s)	537, 603, 724, 838, 1131, 1176
BspMAI	CTGCAG	2 cut(s)	868, 1198
BspMI	ACCTGC	1 cut(s)	1210
BspQI	GCTCTTC	2 cut(s)	1077, 1107
BspT107I	GGYRCC	2 cut(s)	535, 836
BsrFI	RCCGGY	1 cut(s)	1126
BsrI	ACTGG	2 cut(s)	660, 1153
BssAI	RCCGGY	1 cut(s)	1126
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Bst2UI	CCWGG	3 cut(s)	480, 629, 1257
Bst4CI	ACNGT	2 cut(s)	676, 945
Bst6I	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
BstAPI	GCANNNNNTGC	2 cut(s)	1166, 1202
BstC8I	GCNNGC	3 cut(s)	22, 952, 1128
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	624, 737, 1325
BstFNI	CGCG	1 cut(s)	1321
BstHHI	GCGC	1 cut(s)	1323
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	486
BstNI	CCWGG	3 cut(s)	480, 629, 1257
BstSCI	CCNGG	5 cut(s)	478, 565, 627, 872, 1255
BstSFI	CTRYAG	2 cut(s)	864, 1194
BstUI	CGCG	1 cut(s)	1321
BstV1I	GCAGC	9 cut(s)	29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
BstV2I	GAAGAC	1 cut(s)	180
BsuI	GTATCC	2 cut(s)	750, 796
BsuRI	GGCC	4 cut(s)	8, 747, 1126, 1130
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	624, 737, 1325
BtsI	GCAGTG	2 cut(s)	80, 1134
BtsIMutI	CAGTG	5 cut(s)	80, 255, 672, 773, 1134
BveI	ACCTGC	1 cut(s)	1210
Cac8I	GCNNGC	3 cut(s)	22, 952, 1128
CaiI	CAGNNNCTG	2 cut(s)	1166, 1202
CfoI	GCGC	1 cut(s)	1323
Cfr10I	RCCGGY	1 cut(s)	1126
Cfr13I	GGNCC	4 cut(s)	7, 722, 976, 1129
Csp6I	GTAC	3 cut(s)	255, 941, 1082
CspCI	CAANNNNNGTGG	2 cut(s)	1006, 1041
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	3 cut(s)	255, 941, 1082
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eam1104I	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
EarI	CTCTTC	4 cut(s)	225, 1077, 1107, 1110
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
Eco24I	GRGCYC	3 cut(s)	289, 833, 929
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	722, 976
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	1134
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	7, 722
EcoRII	CCWGG	3 cut(s)	478, 627, 1255
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
EcoT38I	GRGCYC	3 cut(s)	289, 833, 929
ErhI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 554, 586
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	226
FokI	GGATG	3 cut(s)	611, 744, 1312
FriOI	GRGCYC	3 cut(s)	289, 833, 929
FseI	GGCCGGCC	1 cut(s)	1130
FspBI	CTAG	3 cut(s)	120, 902, 938
GlaI	GCGC	1 cut(s)	1322
GsaI	CCCAGC	2 cut(s)	207, 881
GsuI	CTGGAG	1 cut(s)	1170
HaeIII	GGCC	4 cut(s)	8, 747, 1126, 1130
HapII	CCGG	6 cut(s)	506, 566, 873, 979, 1127, 1172
HhaI	GCGC	1 cut(s)	1323
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	1321
HinP1I	GCGC	1 cut(s)	1321
HindIII	AAGCTT	2 cut(s)	22, 135
HinfI	GANTC	4 cut(s)	275, 388, 410, 1247
HpaII	CCGG	6 cut(s)	506, 566, 873, 979, 1127, 1172
HphI	GGTGA	4 cut(s)	59, 452, 748, 1058
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	5 cut(s)	515, 522, 652, 824, 1064
Hpy188III	TCNNGA	3 cut(s)	290, 506, 1295
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	523, 713, 758
HpyCH4III	ACNGT	2 cut(s)	676, 945
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	1321
Kpn2I	TCCGGA	1 cut(s)	505
KroI	GCCGGC	1 cut(s)	1126
KroNI	GCCGGC	1 cut(s)	1128
Kzo9I	GATC	1 cut(s)	486
LguI	GCTCTTC	2 cut(s)	1077, 1107
LmnI	GCTCC	2 cut(s)	119, 284
Lsp1109I	GCAGC	9 cut(s)	29, 679, 850, 878, 919, 1126, 1153, 1180, 1202
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	120, 902, 938
MaeIII	GTNAC	4 cut(s)	47, 372, 670, 1046
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	8 cut(s)	180, 242, 455, 538, 569, 1064, 1094, 1127
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	4 cut(s)	289, 478, 833, 929
MluCI	AATT	5 cut(s)	71, 327, 434, 540, 1216
MmeI	TCCRAC	3 cut(s)	802, 940, 1334
MroI	TCCGGA	1 cut(s)	505
MroNI	GCCGGC	1 cut(s)	1126
MroXI	GAANNNNTTC	1 cut(s)	1251
MseI	TTAA	4 cut(s)	312, 575, 1013, 1239
MspA1I	CMGCKG	2 cut(s)	932, 1193
MspI	CCGG	6 cut(s)	506, 566, 873, 979, 1127, 1172
MspR9I	CCNGG	5 cut(s)	480, 567, 629, 874, 1257
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	480, 629, 1257
MvnI	CGCG	1 cut(s)	1321
NaeI	GCCGGC	1 cut(s)	1128
NciI	CCSGG	2 cut(s)	567, 874
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	486
NgoMIV	GCCGGC	1 cut(s)	1126
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	6 cut(s)	537, 603, 724, 838, 1131, 1176
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	4 cut(s)	47, 372, 670, 1046
PciSI	GCTCTTC	2 cut(s)	1077, 1107
PdiI	GCCGGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	1251
PfeI	GAWTC	4 cut(s)	275, 388, 410, 1247
PflMI	CCANNNNNTGG	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	478, 627, 1255
PspFI	CCCAGC	2 cut(s)	203, 877
PspGI	CCWGG	3 cut(s)	478, 627, 1255
PspN4I	GGNNCC	6 cut(s)	537, 603, 724, 838, 1131, 1176
PspPI	GGNCC	4 cut(s)	7, 722, 976, 1129
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	2 cut(s)	868, 1198
PstNI	CAGNNNCTG	2 cut(s)	1166, 1202
PvuII	CAGCTG	2 cut(s)	932, 1193
RigI	GGCCGGCC	1 cut(s)	1130
RsaI	GTAC	3 cut(s)	256, 942, 1083
RsaNI	GTAC	3 cut(s)	255, 941, 1082
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	2 cut(s)	1077, 1107
SaqAI	TTAA	4 cut(s)	312, 575, 1013, 1239
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	4 cut(s)	7, 722, 976, 1129
ScrFI	CCNGG	5 cut(s)	480, 567, 629, 874, 1257
SduI	GDGCHC	4 cut(s)	289, 478, 833, 929
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	864, 1194
SinI	GGWCC	2 cut(s)	722, 976
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	937
Sse9I	AATT	5 cut(s)	71, 327, 434, 540, 1216
SsiI	CCGC	4 cut(s)	533, 744, 800, 1319
SspMI	CTAG	3 cut(s)	120, 902, 938
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	5 cut(s)	478, 565, 627, 872, 1255
StyI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1020
TaaI	ACNGT	2 cut(s)	676, 945
TasI	AATT	5 cut(s)	71, 327, 434, 540, 1216
TatI	WGTACW	2 cut(s)	254, 940
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	4 cut(s)	275, 388, 410, 1247
Tru1I	TTAA	4 cut(s)	312, 575, 1013, 1239
Tru9I	TTAA	4 cut(s)	312, 575, 1013, 1239
TscAI	CASTG	5 cut(s)	87, 255, 679, 780, 1141
TseFI	GTSAC	4 cut(s)	47, 372, 670, 1046
TseI	GCWGC	9 cut(s)	17, 692, 863, 866, 932, 1139, 1166, 1190, 1193
Tsp45I	GTSAC	4 cut(s)	47, 372, 670, 1046
TspDTI	ATGAA	3 cut(s)	141, 243, 613
TspGWI	ACGGA	1 cut(s)	1210
TspRI	CASTG	5 cut(s)	87, 255, 679, 780, 1141
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	2 cut(s)	722, 976
XapI	RAATTY	2 cut(s)	71, 1216
XmnI	GAANNNNTTC	1 cut(s)	1251
XspI	CTAG	3 cut(s)	120, 902, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.