Rmu_ssc0000135.1_g000018

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000135.1
OG0010301
Physical Location & Seq
Reverse (-)
104853 .. 106661
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000135.1_g000018.1.cds

Sequence Viewer

Length: 672 bp
atggaagccaggtttgatgggaactccgaactggttgctgagttggtcactgtaaatgggttcaaagctgcttatgccataaaagatggtgcagaaggaccccgaggatgggtgagtagtggccttccttggataccaccatcaaaagcactgagcgttgattttggcagtttagcggatactattagtggtgctgtcggagagggctcaggtgccttgtctgtttcccttggtattgctgcagcaaccgggctgggtttattggcttttactgagctagaaacaatcctccaacttttgggctcagctgcactagtacagtttgccagcaagaaacttctttttgccgaggaccggaataaaactctacaagaagtggatagtttcttaaccaccaaggttgccccaaaggagtttttgggtgacataaaggctcttcctgcacctgaagaggcaagtccggcccccactgctgctggtactggagtgaaagcagaagctgcaccggaacctaaagtagaagcagctgcagaacctgcccctgagataaattccgttcccaaatcagaagttaaaaaagaatcatttcctgggagttcaaaatccctttctccattcccctattatccagatttcaagcctccaacatctccgcgcccatcccaaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

223

Amino Acids

23.02

Weight (kDa)

4.81

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 298
AccII CGCG 1 cut(s) 655
AciI CCGC 2 cut(s) 176, 653
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 318, 481
AfiI CCNNNNNNNGG 4 cut(s) 108, 109, 298, 354
AgsI TTSAA 3 cut(s) 64, 600, 637
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 2 cut(s) 8, 589
AluBI AGCT 5 cut(s) 68, 277, 308, 500, 527
AluI AGCT 5 cut(s) 68, 277, 308, 500, 527
AlwNI CAGNNNCTG 2 cut(s) 500, 536
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 121, 462
ApeKI GCWGC 8 cut(s) 68, 239, 242, 308, 473, 500, 524, 527
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 3 cut(s) 98, 352, 463
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 124, 434
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 98, 352
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 209, 305
BbvI GCAGC 8 cut(s) 55, 226, 254, 295, 460, 487, 514, 536
BccI CCATC 5 cut(s) 11, 80, 102, 148, 667
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 2 cut(s) 10, 591
BciVI GTATCC 2 cut(s) 126, 172
BcnI CCSGG 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 2 cut(s) 278, 314
BfmI CTRYAG 2 cut(s) 240, 528
BfuAI ACCTGC 1 cut(s) 544
BfuI GTATCC 2 cut(s) 126, 172
BisI GCNGC 8 cut(s) 69, 240, 243, 309, 474, 501, 525, 528
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 8 cut(s) 70, 241, 244, 310, 475, 502, 526, 529
Bme1390I CCNGG 3 cut(s) 10, 250, 591
Bme18I GGWCC 2 cut(s) 98, 352
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 98, 352, 463
BmiI GGNNCC 4 cut(s) 100, 214, 465, 510
BmrFI CCNGG 3 cut(s) 10, 250, 591
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 6 cut(s) 103, 128, 229, 348, 396, 590
BsaWI WCCGGW 2 cut(s) 354, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 109, 298, 354
Bse1I ACTGG 2 cut(s) 36, 487
BseBI CCWGG 2 cut(s) 10, 591
BseDI CCNNGG 6 cut(s) 103, 128, 229, 348, 396, 590
BseGI GGATG 2 cut(s) 113, 659
BseLI CCNNNNNNNGG 4 cut(s) 108, 109, 298, 354
BseMII CTCAG 6 cut(s) 30, 143, 222, 264, 318, 534
BseNI ACTGG 2 cut(s) 36, 487
BseXI GCAGC 8 cut(s) 55, 226, 254, 295, 460, 487, 514, 536
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 4 cut(s) 111, 294, 426, 486
Bsh1236I CGCG 1 cut(s) 655
BshFI GGCC 2 cut(s) 123, 464
BshNI GGYRCC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 4 cut(s) 249, 355, 461, 506
BslI CCNNNNNNNGG 4 cut(s) 108, 109, 298, 354
BsnI GGCC 2 cut(s) 123, 464
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 209, 305
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 2 cut(s) 176, 653
BspANI GGCC 2 cut(s) 123, 464
BspCNI CTCAG 6 cut(s) 31, 144, 221, 265, 317, 535
BspFNI CGCG 1 cut(s) 655
BspLI GGNNCC 4 cut(s) 100, 214, 465, 510
BspMAI CTGCAG 2 cut(s) 244, 532
BspMI ACCTGC 1 cut(s) 544
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 36, 487
BssECI CCNNGG 6 cut(s) 103, 128, 229, 348, 396, 590
BssT1I CCWWGG 3 cut(s) 128, 229, 396
Bst2UI CCWGG 2 cut(s) 10, 591
Bst4CI ACNGT 2 cut(s) 52, 321
Bst6I CTCTTC 2 cut(s) 441, 444
BstAPI GCANNNNNTGC 2 cut(s) 500, 536
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 6 cut(s) 39, 152, 208, 273, 304, 543
BstF5I GGATG 2 cut(s) 113, 659
BstFNI CGCG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 657
BstMWI GCNNNNNNNGC 6 cut(s) 74, 440, 461, 470, 500, 536
BstNI CCWGG 2 cut(s) 10, 591
BstSCI CCNGG 3 cut(s) 8, 248, 589
BstSFI CTRYAG 2 cut(s) 240, 528
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 8 cut(s) 55, 226, 254, 295, 460, 487, 514, 536
BsuI GTATCC 2 cut(s) 126, 172
BsuRI GGCC 2 cut(s) 123, 464
BtsCI GGATG 2 cut(s) 113, 659
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 3 cut(s) 48, 149, 468
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 2 cut(s) 500, 536
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 3 cut(s) 98, 352, 463
Csp6I GTAC 2 cut(s) 317, 480
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviQI GTAC 2 cut(s) 317, 480
DdeI CTNAG 6 cut(s) 39, 152, 208, 273, 304, 543
Eam1104I CTCTTC 2 cut(s) 441, 444
EarI CTCTTC 2 cut(s) 441, 444
Eco130I CCWWGG 3 cut(s) 128, 229, 396
Eco24I GRGCYC 2 cut(s) 209, 305
Eco47I GGWCC 2 cut(s) 98, 352
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 8, 589
EcoT14I CCWWGG 3 cut(s) 128, 229, 396
EcoT38I GRGCYC 2 cut(s) 209, 305
ErhI CCWWGG 3 cut(s) 128, 229, 396
FaiI YATR 3 cut(s) 75, 80, 428
Fnu4HI GCNGC 8 cut(s) 69, 240, 243, 309, 474, 501, 525, 528
FokI GGATG 2 cut(s) 120, 646
FriOI GRGCYC 2 cut(s) 209, 305
Fsp4HI GCNGC 8 cut(s) 69, 240, 243, 309, 474, 501, 525, 528
FspBI CTAG 2 cut(s) 278, 314
GlaI GCGC 1 cut(s) 656
GluI GCNGC 8 cut(s) 69, 240, 243, 309, 474, 501, 525, 528
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 2 cut(s) 123, 464
HapII CCGG 4 cut(s) 249, 355, 461, 506
HhaI GCGC 1 cut(s) 657
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HinfI GANTC 1 cut(s) 581
HpaII CCGG 4 cut(s) 249, 355, 461, 506
HphI GGTGA 2 cut(s) 124, 434
Hpy188I TCNGA 3 cut(s) 28, 200, 568
Hpy188III TCNNGA 1 cut(s) 629
HpyAV CCTTC 2 cut(s) 89, 134
HpyCH4III ACNGT 2 cut(s) 52, 321
HpyCH4V TGCA 6 cut(s) 92, 242, 311, 443, 503, 530
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 440, 461, 470, 500, 536
HpyF3I CTNAG 6 cut(s) 39, 152, 208, 273, 304, 543
HspAI GCGC 1 cut(s) 655
LguI GCTCTTC 1 cut(s) 441
Lsp1109I GCAGC 8 cut(s) 55, 226, 254, 295, 460, 487, 514, 536
MaeI CTAG 2 cut(s) 278, 314
MaeIII GTNAC 2 cut(s) 46, 422
MboII GAAGA 2 cut(s) 428, 461
MhlI GDGCHC 2 cut(s) 209, 305
MluCI AATT 1 cut(s) 550
MmeI TCCRAC 3 cut(s) 178, 316, 668
MnlI CCTC 6 cut(s) 98, 196, 299, 343, 445, 651
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 389, 573
MspA1I CMGCKG 2 cut(s) 308, 527
MspI CCGG 4 cut(s) 249, 355, 461, 506
MspR9I CCNGG 3 cut(s) 10, 250, 591
MvaI CCWGG 2 cut(s) 10, 591
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 6 cut(s) 74, 440, 461, 470, 500, 536
NciI CCSGG 1 cut(s) 250
NlaIV GGNNCC 4 cut(s) 100, 214, 465, 510
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 46, 422
PciSI GCTCTTC 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 8 cut(s) 70, 241, 244, 310, 475, 502, 526, 529
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 8, 589
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 2 cut(s) 8, 589
PspN4I GGNNCC 4 cut(s) 100, 214, 465, 510
PspPI GGNCC 3 cut(s) 98, 352, 463
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 2 cut(s) 244, 532
PstNI CAGNNNCTG 2 cut(s) 500, 536
PvuII CAGCTG 2 cut(s) 308, 527
RsaI GTAC 2 cut(s) 318, 481
RsaNI GTAC 2 cut(s) 317, 480
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 389, 573
SatI GCNGC 8 cut(s) 69, 240, 243, 309, 474, 501, 525, 528
Sau96I GGNCC 3 cut(s) 98, 352, 463
ScrFI CCNGG 3 cut(s) 10, 250, 591
SduI GDGCHC 2 cut(s) 209, 305
SfcI CTRYAG 2 cut(s) 240, 528
SinI GGWCC 2 cut(s) 98, 352
SpeI ACTAGT 1 cut(s) 313
Sse9I AATT 1 cut(s) 550
SsiI CCGC 2 cut(s) 176, 653
SspMI CTAG 2 cut(s) 278, 314
StyD4I CCNGG 3 cut(s) 8, 248, 589
StyI CCWWGG 3 cut(s) 128, 229, 396
TaaI ACNGT 2 cut(s) 52, 321
TasI AATT 1 cut(s) 550
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 2 cut(s) 389, 573
Tru9I TTAA 2 cut(s) 389, 573
TscAI CASTG 3 cut(s) 55, 156, 475
TseFI GTSAC 2 cut(s) 46, 422
TseI GCWGC 8 cut(s) 68, 239, 242, 308, 473, 500, 524, 527
Tsp45I GTSAC 2 cut(s) 46, 422
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 3 cut(s) 55, 156, 475
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 98, 352
XapI RAATTY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 278, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.