pycom07g14660

Rhodanese-like domain-containing protein 4 chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
16661113 .. 16664199
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14660.7

Sequence Viewer

Length: 1314 bp
ATGGAGGCCTTCAATGCAGCAAGCTTGACCCCCATAAGATCAGTTCTTGGTGACAGAAGAAAAATCCCATCACTGCCTTCCATTTCCCTTCCCAAATTCTCCAATCCCACAAGTTTGAAAGCTTCACAAGAGTCTTCATCTCGGAGTTTCCACGGCGGCTTGCTGCTCTTATCTTCAGTTTTCAATGCCGGGTTTGCCAAGGCTTTGACATATGAAGCATTGGGGCAGACTGTGAGTGGTGGAGGTGGAGACTTGGAAGTAGGTGGGGTTCTTGACAGTGTTATCAGTTTTGTGACTGATAATCCTGCAGTTGTCGCTGGCGGTTTCACAGTTTTGGCGGTTCCATTGATTCTGTCTCAGGTTCTGCCTAAGCCGTTCGGTGTTGAATCTGCCAGAAGTGCTTATGTAAAATTGGGTGAGGAGGCCAATGCTCAGTTGCTTGATATAAGATCGCCAGCGGATTTTAGGCAGATTGGTACTCCGGATGTCAAGGGTTTGGGGAAGAAGGCGGTGTCGATTGTTTACAAAGGTGAAGATAAGCCGGGTTTCTTGAAGAAACTCTCTTTGAAGTTCAAGGAGCCAGAAAATACCACATTGTTCATCCTCGATAAATTTGATGGGAACTCCGAGCTGGTTGCAGAATTAGTCACTGTAAATGGGTTCAAAGCTGCTTATGCTATTAAAGATGGTGCTGAAGGACCACGAGGATGGGTGAACAGCGGTCTTCCTTGGACACCACCAACAAAAGCACTGAGTTTTGATTTTGGCAATTTAACAGATGCTCTTAATGGTGCAGTTGGAGAGGACTCAGGTGCCTTGTCTCTTTCCCTTGGGGTCGCCGCAGCAACCGGATTGGGTTTATTGGCTTTTACTGAATTAGAAACAATCCTCCAAGTTTTAGGCTCAGCTGCACTAGTTCAGTTTGCGAGCAAGAAACTCCTTTTTGCTGAGGATCGAAAAGAAACTCTACAACAAGTTGATAAGTTCTTGACCACGAAGGTTGCCCCTAAGGAGCTCGTCGATGACATAAAGCAAATTGGGACAGCTCTTCTGCCAGTAACTGTTAGCAAGGCTCTTCCTGCACCTGCAGAACCAACTCCAGAGCCTACTGCTGCTAGTGATACTGTACAGAAAGCAGAAGCTGTGGTCGAACCAAAAGTAGAAGCAGCTACAGAAGCCACCCCGGAACCAAATTCAGTACCAAAACCAGAAGTTAAAGCAGAATCACTTCCTGGGATTTCGAAACCACTTTCCCCATTCCCTTATTATCCGGATTTCAAGCCTCCGGCATCTCCCAGACCGTCGCAGCCCTAG

Protein Analysis

438

Amino Acids

45.81

Weight (kDa)

5.34

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1093
Acc36I ACCTGC 1 cut(s) 1093
AccB1I GGYRCC 1 cut(s) 812
AccIII TCCGGA 2 cut(s) 481, 1270
AciI CCGC 7 cut(s) 156, 321, 338, 458, 509, 720, 840
AclWI GGATC 1 cut(s) 960
AcsI RAATTY 3 cut(s) 95, 611, 1192
AcuI CTGAAG 2 cut(s) 159, 714
AfaI GTAC 3 cut(s) 478, 1128, 1200
AgsI TTSAA 9 cut(s) 13, 118, 184, 386, 553, 568, 574, 664, 1279
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 1 cut(s) 1231
AluBI AGCT 9 cut(s) 24, 122, 631, 668, 908, 1015, 1046, 1142, 1169
AluI AGCT 9 cut(s) 24, 122, 631, 668, 908, 1015, 1046, 1142, 1169
Alw21I GWGCWC 1 cut(s) 1017
Alw26I GTCTC 3 cut(s) 243, 360, 825
AlwI GGATC 1 cut(s) 960
AlwNI CAGNNNCTG 3 cut(s) 364, 1061, 1142
Aor13HI TCCGGA 2 cut(s) 481, 1270
AoxI GGCC 2 cut(s) 6, 423
ApeKI GCWGC 8 cut(s) 17, 163, 668, 842, 908, 1112, 1166, 1306
ApoI RAATTY 3 cut(s) 95, 611, 1192
Asp700I GAANNNNTTC 1 cut(s) 1227
AspS9I GGNCC 1 cut(s) 698
AsuC2I CCSGG 3 cut(s) 190, 543, 1184
AsuHPI GGTGA 4 cut(s) 62, 428, 542, 724
AsuII TTCGAA 1 cut(s) 1241
AvaII GGWCC 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 1008
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 1 cut(s) 1017
BauI CACGAG 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 126, 716
Bbv12I GWGCWC 1 cut(s) 1017
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 7 cut(s) 29, 150, 655, 854, 895, 1099, 1178
BccI CCATC 4 cut(s) 76, 611, 680, 702
BceAI ACGGC 2 cut(s) 169, 358
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 1233
BcnI CCSGG 3 cut(s) 190, 543, 1184
BcoDI GTCTC 3 cut(s) 243, 360, 825
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 3 cut(s) 914, 1116, 1312
BfmI CTRYAG 3 cut(s) 306, 1086, 1170
BfuAI ACCTGC 1 cut(s) 1093
BlpI GCTNAGC 1 cut(s) 904
Bme1390I CCNGG 4 cut(s) 190, 543, 1184, 1233
Bme18I GGWCC 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 4 cut(s) 342, 579, 814, 1188
BmrFI CCNGG 4 cut(s) 190, 543, 1184, 1233
BmsI GCATC 2 cut(s) 769, 1298
BpiI GAAGAC 2 cut(s) 126, 716
BpmI CTGGAG 1 cut(s) 1083
Bpu10I CCTNAGC 2 cut(s) 369, 948
Bpu1102I GCTNAGC 1 cut(s) 904
Bpu14I TTCGAA 1 cut(s) 1241
BpuMI CCSGG 3 cut(s) 190, 543, 1184
BsaJI CCNNGG 6 cut(s) 151, 198, 728, 829, 1182, 1232
BsaWI WCCGGW 3 cut(s) 481, 848, 1270
Bse1I ACTGG 1 cut(s) 1055
Bse21I CCTNAGG 1 cut(s) 1008
BseAI TCCGGA 2 cut(s) 481, 1270
BseBI CCWGG 1 cut(s) 1233
BseDI CCNNGG 6 cut(s) 151, 198, 728, 829, 1182, 1232
BseGI GGATG 3 cut(s) 490, 600, 713
BseMII CTCAG 6 cut(s) 371, 446, 743, 822, 918, 939
BseNI ACTGG 1 cut(s) 1055
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 7 cut(s) 29, 150, 655, 854, 895, 1099, 1178
BsgI GTGCAG 3 cut(s) 813, 894, 1065
BshFI GGCC 2 cut(s) 8, 425
BshNI GGYRCC 1 cut(s) 812
BsiHKAI GWGCWC 1 cut(s) 1017
BsiSI CCGG 7 cut(s) 189, 482, 542, 849, 1184, 1271, 1286
BslFI GGGAC 1 cut(s) 1054
BsmAI GTCTC 3 cut(s) 243, 360, 825
BsmFI GGGAC 1 cut(s) 1054
BsnI GGCC 2 cut(s) 8, 425
Bsp119I TTCGAA 1 cut(s) 1241
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp13I TCCGGA 2 cut(s) 481, 1270
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 3 cut(s) 38, 449, 952
Bsp1720I GCTNAGC 1 cut(s) 904
BspACI CCGC 7 cut(s) 156, 321, 338, 458, 509, 720, 840
BspANI GGCC 2 cut(s) 8, 425
BspCNI CTCAG 6 cut(s) 370, 445, 744, 821, 917, 940
BspEI TCCGGA 2 cut(s) 481, 1270
BspLI GGNNCC 4 cut(s) 342, 579, 814, 1188
BspMAI CTGCAG 2 cut(s) 310, 1090
BspMI ACCTGC 1 cut(s) 1093
BspPI GGATC 1 cut(s) 960
BspQI GCTCTTC 2 cut(s) 1053, 1080
BspT104I TTCGAA 1 cut(s) 1241
BspT107I GGYRCC 1 cut(s) 812
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 1 cut(s) 1055
BssECI CCNNGG 6 cut(s) 151, 198, 728, 829, 1182, 1232
BssMI GATC 3 cut(s) 38, 449, 952
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 3 cut(s) 198, 728, 829
Bst2BI CACGAG 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 7 cut(s) 232, 278, 331, 652, 1063, 1126, 1302
Bst6I CTCTTC 2 cut(s) 1053, 1080
BstAUI TGTACA 1 cut(s) 1126
BstBI TTCGAA 1 cut(s) 1241
BstC8I GCNNGC 5 cut(s) 22, 161, 319, 456, 928
BstDEI CTNAG 8 cut(s) 357, 369, 432, 752, 808, 904, 948, 1008
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 3 cut(s) 490, 600, 713
BstKTI GATC 3 cut(s) 41, 452, 955
BstMAI GTCTC 3 cut(s) 243, 360, 825
BstMBI GATC 3 cut(s) 38, 449, 952
BstMWI GCNNNNNNNGC 7 cut(s) 14, 194, 314, 398, 674, 1079, 1175
BstNI CCWGG 1 cut(s) 1233
BstSCI CCNGG 4 cut(s) 188, 541, 1182, 1231
BstSFI CTRYAG 3 cut(s) 306, 1086, 1170
BstV1I GCAGC 7 cut(s) 29, 150, 655, 854, 895, 1099, 1178
BstV2I GAAGAC 2 cut(s) 126, 716
BstXI CCANNNNNNTGG 1 cut(s) 708
Bsu36I CCTNAGG 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 8, 425
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 490, 600, 713
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 4 cut(s) 71, 283, 648, 749
BveI ACCTGC 1 cut(s) 1093
Cac8I GCNNGC 5 cut(s) 22, 161, 319, 456, 928
CaiI CAGNNNCTG 3 cut(s) 364, 1061, 1142
Cfr13I GGNCC 1 cut(s) 698
Csp6I GTAC 3 cut(s) 477, 1127, 1199
CspCI CAANNNNNGTGG 2 cut(s) 982, 1017
CviQI GTAC 3 cut(s) 477, 1127, 1199
DdeI CTNAG 8 cut(s) 357, 369, 432, 752, 808, 904, 948, 1008
DpnI GATC 3 cut(s) 40, 451, 954
DpnII GATC 3 cut(s) 38, 449, 952
Eam1104I CTCTTC 2 cut(s) 1053, 1080
EarI CTCTTC 2 cut(s) 1053, 1080
Ecl136II GAGCTC 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 198, 728, 829
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 1017
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 2 cut(s) 159, 714
Eco81I CCTNAGG 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 1231
EcoT14I CCWWGG 3 cut(s) 198, 728, 829
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 3 cut(s) 198, 728, 829
FaiI YATR 7 cut(s) 35, 211, 213, 405, 446, 675, 1028
FaqI GGGAC 1 cut(s) 1054
FauNDI CATATG 1 cut(s) 211
FokI GGATG 3 cut(s) 497, 587, 720
FriOI GRGCYC 1 cut(s) 1017
FspBI CTAG 3 cut(s) 914, 1116, 1312
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 2 cut(s) 8, 425
HapII CCGG 7 cut(s) 189, 482, 542, 849, 1184, 1271, 1286
HindIII AAGCTT 2 cut(s) 22, 120
HinfI GANTC 5 cut(s) 131, 349, 386, 806, 1223
HpaII CCGG 7 cut(s) 189, 482, 542, 849, 1184, 1271, 1286
HphI GGTGA 4 cut(s) 62, 428, 542, 724
Hpy166II GTNNAC 2 cut(s) 523, 715
Hpy188I TCNGA 2 cut(s) 144, 628
Hpy188III TCNNGA 6 cut(s) 272, 482, 550, 988, 1100, 1271
Hpy8I GTNNAC 2 cut(s) 523, 715
Hpy99I CGWCG 2 cut(s) 1022, 1306
HpyAV CCTTC 6 cut(s) 19, 87, 98, 499, 689, 991
HpyCH4III ACNGT 7 cut(s) 232, 278, 331, 652, 1063, 1126, 1302
HpyCH4V TGCA 7 cut(s) 17, 308, 638, 794, 911, 1082, 1088
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 194, 314, 398, 674, 1079, 1175
HpyF3I CTNAG 8 cut(s) 357, 369, 432, 752, 808, 904, 948, 1008
Kpn2I TCCGGA 2 cut(s) 481, 1270
Kzo9I GATC 3 cut(s) 38, 449, 952
LguI GCTCTTC 2 cut(s) 1053, 1080
LmnI GCTCC 2 cut(s) 577, 1012
Lsp1109I GCAGC 7 cut(s) 29, 150, 655, 854, 895, 1099, 1178
LweI GCATC 2 cut(s) 769, 1298
MaeI CTAG 3 cut(s) 914, 1116, 1312
MaeIII GTNAC 4 cut(s) 50, 292, 646, 1057
MalI GATC 3 cut(s) 40, 451, 954
MboI GATC 3 cut(s) 38, 449, 952
MboII GAAGA 9 cut(s) 69, 126, 165, 514, 545, 565, 716, 1040, 1067
MhlI GDGCHC 1 cut(s) 1017
MluCI AATT 8 cut(s) 95, 410, 611, 641, 769, 875, 1035, 1192
MlyI GAGTC 2 cut(s) 140, 800
MmeI TCCRAC 1 cut(s) 778
MnlI CCTC 9 cut(s) 236, 412, 415, 614, 698, 796, 899, 943, 1293
MroI TCCGGA 2 cut(s) 481, 1270
MroXI GAANNNNTTC 1 cut(s) 1227
MseI TTAA 4 cut(s) 681, 773, 786, 1215
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 3 cut(s) 458, 720, 908
MspI CCGG 7 cut(s) 189, 482, 542, 849, 1184, 1271, 1286
MspR9I CCNGG 4 cut(s) 190, 543, 1184, 1233
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 7 cut(s) 14, 194, 314, 398, 674, 1079, 1175
NciI CCSGG 3 cut(s) 190, 543, 1184
NdeI CATATG 1 cut(s) 211
NdeII GATC 3 cut(s) 38, 449, 952
NlaIV GGNNCC 4 cut(s) 342, 579, 814, 1188
NmuCI GTSAC 3 cut(s) 50, 292, 646
NspV TTCGAA 1 cut(s) 1241
PaqCI CACCTGC 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 8
PciSI GCTCTTC 2 cut(s) 1053, 1080
PdmI GAANNNNTTC 1 cut(s) 1227
PfeI GAWTC 3 cut(s) 349, 386, 1223
PleI GAGTC 2 cut(s) 139, 800
PpsI GAGTC 2 cut(s) 139, 800
Psp124BI GAGCTC 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 1231
PspGI CCWGG 1 cut(s) 1231
PspN4I GGNNCC 4 cut(s) 342, 579, 814, 1188
PspPI GGNCC 1 cut(s) 698
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PstI CTGCAG 2 cut(s) 310, 1090
PstNI CAGNNNCTG 3 cut(s) 364, 1061, 1142
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 3 cut(s) 478, 1128, 1200
RsaNI GTAC 3 cut(s) 477, 1127, 1199
RseI CAYNNNNRTG 1 cut(s) 706
SacI GAGCTC 1 cut(s) 1017
SapI GCTCTTC 2 cut(s) 1053, 1080
SaqAI TTAA 4 cut(s) 681, 773, 786, 1215
Sau3AI GATC 3 cut(s) 38, 449, 952
Sau96I GGNCC 1 cut(s) 698
SchI GAGTC 2 cut(s) 140, 800
ScrFI CCNGG 4 cut(s) 190, 543, 1184, 1233
SduI GDGCHC 1 cut(s) 1017
SfaNI GCATC 2 cut(s) 769, 1298
SfcI CTRYAG 3 cut(s) 306, 1086, 1170
SfuI TTCGAA 1 cut(s) 1241
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 706
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 8 cut(s) 95, 410, 611, 641, 769, 875, 1035, 1192
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 7 cut(s) 156, 321, 338, 458, 509, 720, 840
SspMI CTAG 3 cut(s) 914, 1116, 1312
SstI GAGCTC 1 cut(s) 1017
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 188, 541, 1182, 1231
StyI CCWWGG 3 cut(s) 198, 728, 829
TaaI ACNGT 7 cut(s) 232, 278, 331, 652, 1063, 1126, 1302
TaqI TCGA 6 cut(s) 515, 606, 955, 1020, 1149, 1241
TasI AATT 8 cut(s) 95, 410, 611, 641, 769, 875, 1035, 1192
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 2 cut(s) 159, 842
TfiI GAWTC 3 cut(s) 349, 386, 1223
Tru1I TTAA 4 cut(s) 681, 773, 786, 1215
Tru9I TTAA 4 cut(s) 681, 773, 786, 1215
TscAI CASTG 4 cut(s) 78, 283, 655, 756
TseFI GTSAC 3 cut(s) 50, 292, 646
TseI GCWGC 8 cut(s) 17, 163, 668, 842, 908, 1112, 1166, 1306
Tsp45I GTSAC 3 cut(s) 50, 292, 646
TspDTI ATGAA 3 cut(s) 126, 228, 589
TspRI CASTG 4 cut(s) 78, 283, 655, 756
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 3 cut(s) 95, 611, 1192
XmnI GAANNNNTTC 1 cut(s) 1227
XspI CTAG 3 cut(s) 914, 1116, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.