Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334595.1

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

423 .. 986

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

aagttctcaagctccactagctttagtgctaaagcttcacaagagggttcatctaagagcttccgtggtggactattgcttttgtcttctgttttcaatgctgggattgccaaggctttgacatatgaagaggtattggggcagtcagtgagtacagcaaatggagactttgattcaagtggagctcttgacaatgttattagctttgttaatgacaaccctgcaattatagctggtgggtttgccatcttggctgttcctttggttttgtcacaggtgctaaagaatcctaagccatttggtgttgaatctgctaagagtgcttatgcaaaattgggtgaagatgcaaatgcatttctggttgatataagagcaccaggggagataaggcaagtaggtagtccggatatccgaggtctgaggaagaaggcggtgccaattgtttataaaggggaagataagccgggcttcttaaagaagctctctttgaagttcaaggaaccagagaatactacatttttcatcctggataagtatgtgtcttcacccaattttacagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

187

Amino Acids

19.86

Weight (kDa)

9.22

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	97, 177, 308, 490, 496
AjnI	CCWGG	2 cut(s)	376, 525
AluBI	AGCT	8 cut(s)	12, 21, 35, 60, 185, 204, 233, 481
AluI	AGCT	8 cut(s)	12, 21, 35, 60, 185, 204, 233, 481
Alw21I	GWGCWC	2 cut(s)	187, 376
Alw26I	GTCTC	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	403
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	350, 537
BanI	GGYRCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	78, 534
Bbv12I	GWGCWC	2 cut(s)	187, 376
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	378, 527
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	251
Bme1390I	CCNGG	3 cut(s)	378, 465, 527
BmiI	GGNNCC	2 cut(s)	435, 501
BmrFI	CCNGG	3 cut(s)	378, 465, 527
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	78, 534
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	465
BsaJI	CCNNGG	4 cut(s)	64, 111, 377, 412
BsaWI	WCCGGW	1 cut(s)	403
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	378, 527
BseDI	CCNNGG	4 cut(s)	64, 111, 377, 412
BseGI	GGATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	433
BsiHKAI	GWGCWC	2 cut(s)	187, 376
BsiSI	CCGG	2 cut(s)	404, 464
BsmAI	GTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	187, 376
Bsp13I	TCCGGA	1 cut(s)	403
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	435, 501
BspT107I	GGYRCC	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	64, 111, 377, 412
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	378, 527
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	123
BstDEI	CTNAG	4 cut(s)	54, 291, 315, 419
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 107, 230, 251, 320
BstNI	CCWGG	2 cut(s)	378, 527
BstSCI	CCNGG	3 cut(s)	376, 463, 525
BstV2I	GAAGAC	2 cut(s)	78, 534
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	153
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	54, 291, 315, 419
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	376, 525
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	7 cut(s)	124, 126, 230, 327, 368, 447, 537
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FauNDI	CATATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	105
HapII	CCGG	2 cut(s)	404, 464
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	3 cut(s)	173, 286, 308
HpaII	CCGG	2 cut(s)	404, 464
HphI	GGTGA	2 cut(s)	350, 537
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	413, 420
Hpy188III	TCNNGA	2 cut(s)	188, 404
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	4 cut(s)	224, 329, 347, 353
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 107, 230, 251, 320
HpyF3I	CTNAG	4 cut(s)	54, 291, 315, 419
Kpn2I	TCCGGA	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	17, 182
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	270
MboII	GAAGA	6 cut(s)	78, 140, 353, 436, 467, 534
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	187, 376
MluCI	AATT	4 cut(s)	225, 332, 438, 550
MnlI	CCTC	4 cut(s)	37, 124, 407, 414
Mph1103I	ATGCAT	1 cut(s)	355
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	3 cut(s)	210, 473, 562
MspI	CCGG	2 cut(s)	404, 464
MspR9I	CCNGG	3 cut(s)	378, 465, 527
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	378, 527
MwoI	GCNNNNNNNGC	5 cut(s)	18, 107, 230, 251, 320
NciI	CCSGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	435, 501
NmuCI	GTSAC	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	173, 286, 308
PfoI	TCCNGGA	1 cut(s)	525
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	376, 525
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	376, 525
PspN4I	GGNNCC	2 cut(s)	435, 501
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	210, 473, 562
ScrFI	CCNGG	3 cut(s)	378, 465, 527
SduI	GDGCHC	2 cut(s)	187, 376
SfaNI	GCATC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	4 cut(s)	225, 332, 438, 550
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	376, 463, 525
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	559
TasI	AATT	4 cut(s)	225, 332, 438, 550
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	173, 286, 308
Tru1I	TTAA	3 cut(s)	210, 473, 562
Tru9I	TTAA	3 cut(s)	210, 473, 562
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	39, 141, 511
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	153
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.