Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

38057725 .. 38060395

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0268300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGATAAGAACTCGTCAGGCCCAATTCCTGATGGCTGGGACGTTAAGACTGAACGCCAGAAGGACGGATCTGAAATCCCGTGCTACTGGTGTCCCAGAAGTGGTCAGCATTTCTACACATATAAAGATATGATGCGATATGTAGAATACGCTCAGAAAAACCAGCTTTCGATCTACTCACCGGATTTTCAGACCATGAAAATTAGAAAGAAAGCTAATTGGTCCCACAAGGGGAACAGAACTATAATTGCTCCTCGGAGAAGTCACTTTCTGGGGGAGAGTTCAAAGACACTGCCTTCTTATCGGGTAACTTTTCCCGAGGAAAGCTCCGACTTAGAGGAAAGGACTACCCTGTCTAACCCTGAGGACAGTACTGAATCTACTAATACAGGGAAGGATATGGAAGCTAGTCAGGCTGGGATTGACAAAGAACCAGAAATTTTGAGCAGTGACCTTGAAGCATTGGTAATTGGGATTGAGAAATTAAGCCTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

166

Amino Acids

18.97

Weight (kDa)

5.31

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	104, 234
AgsI	TTSAA	2 cut(s)	288, 461
AluBI	AGCT	4 cut(s)	169, 218, 330, 410
AluI	AGCT	4 cut(s)	169, 218, 330, 410
AlwI	GGATC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	23, 225
AsuHPI	GGTGA	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	225
AxyI	CCTNAGG	1 cut(s)	366
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	411
BmcAI	AGTACT	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	23, 225
BmiI	GGNNCC	1 cut(s)	227
BmsI	GCATC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaJI	CCNNGG	2 cut(s)	257, 321
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 234
Bse1I	ACTGG	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	257, 321
BseLI	CCNNNNNNNGG	2 cut(s)	104, 234
BseMII	CTCAG	2 cut(s)	170, 357
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	246
BseYI	CCCAGC	2 cut(s)	39, 419
BshFI	GGCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	3 cut(s)	56, 81, 211
BslI	CCNNNNNNNGG	2 cut(s)	104, 234
BsmFI	GGGAC	3 cut(s)	56, 81, 211
BsnI	GGCC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	71, 174
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	169, 358
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	257, 321
BssMI	GATC	2 cut(s)	71, 174
Bst4CI	ACNGT	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	156, 337, 366
BstKTI	GATC	2 cut(s)	74, 177
BstMBI	GATC	2 cut(s)	71, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	24
BtsI	GCAGTG	2 cut(s)	293, 457
BtsIMutI	CAGTG	2 cut(s)	293, 457
Cfr13I	GGNCC	2 cut(s)	23, 225
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	24, 39, 169, 218, 330, 410, 419, 492
CviKI_1	RGCY	8 cut(s)	24, 39, 169, 218, 330, 410, 419, 492
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	3 cut(s)	156, 337, 366
DpnI	GATC	2 cut(s)	73, 176
DpnII	GATC	2 cut(s)	71, 174
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	320
FaeI	CATG	1 cut(s)	202
FaiI	YATR	7 cut(s)	124, 126, 134, 144, 200, 248, 404
FaqI	GGGAC	3 cut(s)	56, 81, 211
FatI	CATG	1 cut(s)	198
FspBI	CTAG	1 cut(s)	411
GsaI	CCCAGC	2 cut(s)	43, 423
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	76, 159, 195, 261, 334
Hpy188III	TCNNGA	2 cut(s)	32, 320
HpyAV	CCTTC	3 cut(s)	58, 309, 391
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	3 cut(s)	156, 337, 366
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	71, 174
LmnI	GCTCC	2 cut(s)	259, 335
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	266, 310, 452
MalI	GATC	2 cut(s)	73, 176
MboI	GATC	2 cut(s)	71, 174
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	7 cut(s)	27, 204, 220, 249, 441, 471, 485
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	267, 316, 334, 361
MseI	TTAA	2 cut(s)	48, 488
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	71, 174
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	2 cut(s)	266, 452
PfeI	GAWTC	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	39, 419
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	23, 225
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	48, 488
Sau3AI	GATC	2 cut(s)	71, 174
Sau96I	GGNCC	2 cut(s)	23, 225
ScaI	AGTACT	1 cut(s)	376
SetI	ASST	6 cut(s)	48, 171, 220, 332, 412, 459
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	7 cut(s)	27, 204, 220, 249, 441, 471, 485
SspMI	CTAG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	173
TasI	AATT	7 cut(s)	27, 204, 220, 249, 441, 471, 485
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	48, 488
Tru9I	TTAA	2 cut(s)	48, 488
TscAI	CASTG	2 cut(s)	300, 457
TseFI	GTSAC	2 cut(s)	266, 452
Tsp45I	GTSAC	2 cut(s)	266, 452
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	300, 457
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	441
XspI	CTAG	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.