pycom01g10700

Rhodanese-like domain-containing protein 4 chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
11505133 .. 11508203
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10700.1

Sequence Viewer

Length: 1326 bp
ATGGAGGCCCTCCATGCAGCAAGCTTGACCCCCATAAGATCACTTCTTGGTGACAGAAAAAAAATCCCATCACTGCCCTCCATTTCCGTTCCCAAATTCTCAAATCCCACAAGTTTGAGAGCTTCACAAGAGTCTTCATCTCGGAGTTTCCATTGCGGTTTGCTGCTCTTATCTTCGGTTTTCAATGCCGGGTTTGCCAAGGCTTTGACATATGAGGAAGCATTGGGGCAGTCTGTGAGTGGTGGAGGTGGAGACTTGGAAGTAGGTGGTGGGGTTCTTGACAATGTTATCAGTTTTGTGACCGATAATCCTGCAGTTATAGCTGGTGGTTTTGCGGTTTTGGCGGTTCCATTGGTTCTGTCTCAGGTTCTGAAGCCTCCTAAGCCGTTTGGTGTTGACTCTGCAAGAAGTGCTTATGCAAAATTGGGTGAGGATGCCAATGCTCAGTTGCTTGATATAAGACCTCCCGCGGAGTTTAGGCAGGTTGGTACTCCGGATGTCAAGGGTTTGGGGAAGAAGGCGGTGTCCATTGTTTACAAACGTGAAGATAAGCCGGGGTTCTTGAAGAAGCTTTCTTTGAAGTTCAAGGAGCCAGAAAATACCACATTGTTCATCCTAGATAAATTTGATGGGAACTCTGAGCTGGTTGCAGAATTAGTCGCTGTAAATGGGTTCAAAGCTGCTTATGCTATTAAAGATGGTGCGGAAGGACCACGAGGATGGGTGAACAGCGGTCTTCCTTGGACACCACCACCGAAAGCACTGAGTCTTGATTTTGGAAATTTAGCAGATGCTCTTAGTGGTGCAGTTGGAGAGGGATCGGGTGCCTTGTCTCTTTCCCTTGGGGTTGCTGCAGCAACCGGATTGGGTTTCTTGGCTTATACTGAGGTAGAAACAATCCTCCAGTTTTTAGGCTCGGTTGCACTAGTTCAGTTTGTGAGCACGAAACTCCTTTTTGCCGAGGATCGAAAAGAAACTGTACAACAAGTTGATAAGTTCTTGACCACGGAGGTTGCCCCAAAGGACCTCCTCGATGACATAAAGCAAATCGGGACAGCTTTTCTGCCAGTAACTGTTAGCAAGGTTCTTCCTGCACCTGCAGAACCAATTCCAGAGCCTACTGCTGCTAGTGATACCGTACAGAAAGCAGAAGCTGTGGTCGAACCAAAAGTAGAAGCAGCTGCAGAAGCCACACAGGAACCAAATTCAGTACCAAAACCAGAAGTTAAAGCGGAATCACTTCCCGGGATTTCGAAACCACTTTCCCCATTCCCCTATTATCCGGATTTCAAGCCTCCGGCATCCCCCAGACCATCGCAGCCCTAG

Protein Analysis

442

Amino Acids

46.28

Weight (kDa)

5.32

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1105
Acc36I ACCTGC 2 cut(s) 472, 1105
AccB1I GGYRCC 1 cut(s) 824
AccII CGCG 1 cut(s) 470
AccIII TCCGGA 2 cut(s) 493, 1282
AciI CCGC 9 cut(s) 156, 335, 344, 468, 470, 521, 704, 732, 1232
AclWI GGATC 2 cut(s) 826, 972
AcsI RAATTY 4 cut(s) 95, 623, 781, 1204
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 4 cut(s) 490, 981, 1140, 1212
AgsI TTSAA 6 cut(s) 184, 565, 580, 586, 676, 1291
AhlI ACTAGT 1 cut(s) 925
AluBI AGCT 9 cut(s) 24, 122, 323, 571, 643, 680, 1058, 1154, 1181
AluI AGCT 9 cut(s) 24, 122, 323, 571, 643, 680, 1058, 1154, 1181
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 3 cut(s) 246, 366, 837
AlwI GGATC 2 cut(s) 826, 972
AlwNI CAGNNNCTG 3 cut(s) 370, 1073, 1154
Ama87I CYCGRG 1 cut(s) 1244
Aor13HI TCCGGA 2 cut(s) 493, 1282
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 9 cut(s) 17, 163, 680, 851, 854, 1124, 1178, 1181, 1318
ApoI RAATTY 4 cut(s) 95, 623, 781, 1204
Asp700I GAANNNNTTC 2 cut(s) 1107, 1239
AspS9I GGNCC 3 cut(s) 7, 710, 1024
AsuC2I CCSGG 4 cut(s) 190, 555, 1245, 1246
AsuHPI GGTGA 3 cut(s) 62, 440, 736
AsuII TTCGAA 1 cut(s) 1253
AvaI CYCGRG 1 cut(s) 1244
AvaII GGWCC 2 cut(s) 710, 1024
BanI GGYRCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 126, 728
Bbv12I GWGCWC 1 cut(s) 944
BbvI GCAGC 8 cut(s) 29, 150, 667, 838, 866, 1111, 1168, 1190
BccI CCATC 5 cut(s) 76, 623, 692, 714, 1321
BceAI ACGGC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcnI CCSGG 4 cut(s) 190, 555, 1245, 1246
BcoDI GTCTC 3 cut(s) 246, 366, 837
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 4 cut(s) 617, 926, 1128, 1324
BfmI CTRYAG 4 cut(s) 312, 852, 1098, 1182
BfuAI ACCTGC 2 cut(s) 472, 1105
BisI GCNGC 9 cut(s) 18, 164, 681, 852, 855, 1125, 1179, 1182, 1319
BlsI GCNGC 9 cut(s) 19, 165, 682, 853, 856, 1126, 1180, 1183, 1320
Bme1390I CCNGG 4 cut(s) 190, 555, 1245, 1246
Bme18I GGWCC 2 cut(s) 710, 1024
BmeT110I CYCGRG 1 cut(s) 1244
BmgT120I GGNCC 3 cut(s) 7, 710, 1024
BmiI GGNNCC 4 cut(s) 348, 591, 826, 1200
BmrFI CCNGG 4 cut(s) 190, 555, 1245, 1246
BmsI GCATC 3 cut(s) 424, 781, 1310
BpiI GAAGAC 2 cut(s) 126, 728
BpmI CTGGAG 1 cut(s) 887
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 1253
BpuMI CCSGG 4 cut(s) 190, 555, 1245, 1246
BsaJI CCNNGG 8 cut(s) 198, 468, 554, 740, 841, 960, 1005, 1244
BsaWI WCCGGW 3 cut(s) 493, 860, 1282
Bse1I ACTGG 2 cut(s) 904, 1067
Bse3DI GCAATG 1 cut(s) 151
BseAI TCCGGA 2 cut(s) 493, 1282
BseDI CCNNGG 8 cut(s) 198, 468, 554, 740, 841, 960, 1005, 1244
BseGI GGATG 5 cut(s) 439, 502, 612, 725, 1301
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 5 cut(s) 377, 458, 630, 755, 876
BseNI ACTGG 2 cut(s) 904, 1067
BseRI GAGGAG 1 cut(s) 1019
BseXI GCAGC 8 cut(s) 29, 150, 667, 838, 866, 1111, 1168, 1190
BsgI GTGCAG 2 cut(s) 825, 1077
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 1244
BsiSI CCGG 7 cut(s) 189, 494, 554, 861, 1245, 1283, 1298
BslFI GGGAC 1 cut(s) 1066
BsmAI GTCTC 3 cut(s) 246, 366, 837
BsmFI GGGAC 1 cut(s) 1066
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 1244
Bsp119I TTCGAA 1 cut(s) 1253
Bsp1286I GDGCHC 1 cut(s) 944
Bsp13I TCCGGA 2 cut(s) 493, 1282
Bsp1407I TGTACA 1 cut(s) 979
Bsp143I GATC 3 cut(s) 38, 818, 964
BspACI CCGC 9 cut(s) 156, 335, 344, 468, 470, 521, 704, 732, 1232
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 5 cut(s) 376, 457, 631, 756, 877
BspEI TCCGGA 2 cut(s) 493, 1282
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 4 cut(s) 348, 591, 826, 1200
BspMAI CTGCAG 4 cut(s) 316, 856, 1102, 1186
BspMI ACCTGC 2 cut(s) 472, 1105
BspPI GGATC 2 cut(s) 826, 972
BspT104I TTCGAA 1 cut(s) 1253
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 979
BsrI ACTGG 2 cut(s) 904, 1067
BssECI CCNNGG 8 cut(s) 198, 468, 554, 740, 841, 960, 1005, 1244
BssMI GATC 3 cut(s) 38, 818, 964
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 3 cut(s) 198, 740, 841
Bst2BI CACGAG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 979, 1075, 1138
BstAPI GCANNNNNTGC 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 979
BstBI TTCGAA 1 cut(s) 1253
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 7 cut(s) 363, 381, 444, 639, 764, 797, 885
BstDSI CCRYGG 2 cut(s) 468, 1005
BstF5I GGATG 5 cut(s) 439, 502, 612, 725, 1301
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 3 cut(s) 41, 821, 967
BstMAI GTCTC 3 cut(s) 246, 366, 837
BstMBI GATC 3 cut(s) 38, 818, 964
BstMWI GCNNNNNNNGC 8 cut(s) 14, 194, 320, 341, 382, 410, 686, 1187
BstSCI CCNGG 4 cut(s) 188, 553, 1243, 1244
BstSFI CTRYAG 4 cut(s) 312, 852, 1098, 1182
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 8 cut(s) 29, 150, 667, 838, 866, 1111, 1168, 1190
BstV2I GAAGAC 2 cut(s) 126, 728
BstXI CCANNNNNNTGG 1 cut(s) 720
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 2 cut(s) 468, 1005
BtgZI GCGATG 1 cut(s) 1299
BtsCI GGATG 5 cut(s) 439, 502, 612, 725, 1301
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 761
BveI ACCTGC 2 cut(s) 472, 1105
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 3 cut(s) 370, 1073, 1154
Cfr13I GGNCC 3 cut(s) 7, 710, 1024
Cfr42I CCGCGG 1 cut(s) 471
Cfr9I CCCGGG 1 cut(s) 1244
Csp6I GTAC 4 cut(s) 489, 980, 1139, 1211
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 1 cut(s) 14
CviQI GTAC 4 cut(s) 489, 980, 1139, 1211
DdeI CTNAG 7 cut(s) 363, 381, 444, 639, 764, 797, 885
DpnI GATC 3 cut(s) 40, 820, 966
DpnII GATC 3 cut(s) 38, 818, 964
Eco130I CCWWGG 3 cut(s) 198, 740, 841
Eco47I GGWCC 2 cut(s) 710, 1024
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 1244
EcoO109I RGGNCCY 2 cut(s) 7, 1024
EcoT14I CCWWGG 3 cut(s) 198, 740, 841
ErhI CCWWGG 3 cut(s) 198, 740, 841
FaeI CATG 1 cut(s) 17
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 1 cut(s) 1066
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 475
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 9 cut(s) 18, 164, 681, 852, 855, 1125, 1179, 1182, 1319
FokI GGATG 5 cut(s) 446, 509, 599, 732, 1288
Fsp4HI GCNGC 9 cut(s) 18, 164, 681, 852, 855, 1125, 1179, 1182, 1319
FspBI CTAG 4 cut(s) 617, 926, 1128, 1324
GluI GCNGC 9 cut(s) 18, 164, 681, 852, 855, 1125, 1179, 1182, 1319
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 1 cut(s) 8
HapII CCGG 7 cut(s) 189, 494, 554, 861, 1245, 1283, 1298
Hin1II CATG 1 cut(s) 17
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 2 cut(s) 22, 569
HinfI GANTC 4 cut(s) 131, 398, 766, 1235
HpaII CCGG 7 cut(s) 189, 494, 554, 861, 1245, 1283, 1298
HphI GGTGA 3 cut(s) 62, 440, 736
Hpy166II GTNNAC 3 cut(s) 397, 535, 727
Hpy188I TCNGA 3 cut(s) 144, 372, 640
Hpy188III TCNNGA 8 cut(s) 278, 494, 562, 770, 1000, 1051, 1112, 1283
Hpy8I GTNNAC 3 cut(s) 397, 535, 727
HpyAV CCTTC 2 cut(s) 511, 701
HpyCH4III ACNGT 3 cut(s) 979, 1075, 1138
HpyCH4IV ACGT 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 194, 320, 341, 382, 410, 686, 1187
HpyF3I CTNAG 7 cut(s) 363, 381, 444, 639, 764, 797, 885
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 1 cut(s) 17
Kpn2I TCCGGA 2 cut(s) 493, 1282
KspI CCGCGG 1 cut(s) 471
Kzo9I GATC 3 cut(s) 38, 818, 964
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 8 cut(s) 29, 150, 667, 838, 866, 1111, 1168, 1190
LweI GCATC 3 cut(s) 424, 781, 1310
MaeI CTAG 4 cut(s) 617, 926, 1128, 1324
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 3 cut(s) 50, 298, 1069
MalI GATC 3 cut(s) 40, 820, 966
MboI GATC 3 cut(s) 38, 818, 964
MboII GAAGA 7 cut(s) 126, 165, 526, 557, 577, 728, 1079
MhlI GDGCHC 1 cut(s) 944
MluCI AATT 7 cut(s) 95, 422, 623, 653, 781, 1107, 1204
MlyI GAGTC 3 cut(s) 140, 392, 775
MmeI TCCRAC 1 cut(s) 790
MroI TCCGGA 2 cut(s) 493, 1282
MroXI GAANNNNTTC 2 cut(s) 1107, 1239
MseI TTAA 2 cut(s) 693, 1227
MslI CAYNNNNRTG 1 cut(s) 718
MspA1I CMGCKG 3 cut(s) 470, 732, 1181
MspI CCGG 7 cut(s) 189, 494, 554, 861, 1245, 1283, 1298
MspR9I CCNGG 4 cut(s) 190, 555, 1245, 1246
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 8 cut(s) 14, 194, 320, 341, 382, 410, 686, 1187
NciI CCSGG 4 cut(s) 190, 555, 1245, 1246
NdeI CATATG 1 cut(s) 211
NdeII GATC 3 cut(s) 38, 818, 964
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 4 cut(s) 348, 591, 826, 1200
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 2 cut(s) 50, 298
NspV TTCGAA 1 cut(s) 1253
PaqCI CACCTGC 1 cut(s) 1105
PdmI GAANNNNTTC 2 cut(s) 1107, 1239
PfeI GAWTC 1 cut(s) 1235
PkrI GCNGC 9 cut(s) 19, 165, 682, 853, 856, 1126, 1180, 1183, 1320
PleI GAGTC 3 cut(s) 139, 392, 774
PpsI GAGTC 3 cut(s) 139, 392, 774
PpuMI RGGWCCY 1 cut(s) 1024
Psp5II RGGWCCY 1 cut(s) 1024
PspN4I GGNNCC 4 cut(s) 348, 591, 826, 1200
PspPI GGNCC 3 cut(s) 7, 710, 1024
PspPPI RGGWCCY 1 cut(s) 1024
PstI CTGCAG 4 cut(s) 316, 856, 1102, 1186
PstNI CAGNNNCTG 3 cut(s) 370, 1073, 1154
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 4 cut(s) 490, 981, 1140, 1212
RsaNI GTAC 4 cut(s) 489, 980, 1139, 1211
RseI CAYNNNNRTG 1 cut(s) 718
SacII CCGCGG 1 cut(s) 471
SaqAI TTAA 2 cut(s) 693, 1227
SatI GCNGC 9 cut(s) 18, 164, 681, 852, 855, 1125, 1179, 1182, 1319
Sau3AI GATC 3 cut(s) 38, 818, 964
Sau96I GGNCC 3 cut(s) 7, 710, 1024
SchI GAGTC 3 cut(s) 140, 392, 775
ScrFI CCNGG 4 cut(s) 190, 555, 1245, 1246
SduI GDGCHC 1 cut(s) 944
SfaNI GCATC 3 cut(s) 424, 781, 1310
SfcI CTRYAG 4 cut(s) 312, 852, 1098, 1182
Sfr303I CCGCGG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 1253
SgrBI CCGCGG 1 cut(s) 471
SinI GGWCC 2 cut(s) 710, 1024
SmaI CCCGGG 1 cut(s) 1246
SmiMI CAYNNNNRTG 1 cut(s) 718
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 7 cut(s) 95, 422, 623, 653, 781, 1107, 1204
SsiI CCGC 9 cut(s) 156, 335, 344, 468, 470, 521, 704, 732, 1232
SspMI CTAG 4 cut(s) 617, 926, 1128, 1324
StyD4I CCNGG 4 cut(s) 188, 553, 1243, 1244
StyI CCWWGG 3 cut(s) 198, 740, 841
TaaI ACNGT 3 cut(s) 979, 1075, 1138
TaiI ACGT 1 cut(s) 544
TaqI TCGA 4 cut(s) 967, 1032, 1161, 1253
TaqII GACCGA 1 cut(s) 317
TasI AATT 7 cut(s) 95, 422, 623, 653, 781, 1107, 1204
TatI WGTACW 1 cut(s) 979
TfiI GAWTC 1 cut(s) 1235
Tru1I TTAA 2 cut(s) 693, 1227
Tru9I TTAA 2 cut(s) 693, 1227
TscAI CASTG 2 cut(s) 78, 768
TseFI GTSAC 2 cut(s) 50, 298
TseI GCWGC 9 cut(s) 17, 163, 680, 851, 854, 1124, 1178, 1181, 1318
Tsp45I GTSAC 2 cut(s) 50, 298
TspDTI ATGAA 2 cut(s) 126, 601
TspGWI ACGGA 2 cut(s) 76, 1022
TspMI CCCGGG 1 cut(s) 1244
TspRI CASTG 2 cut(s) 78, 768
VpaK11BI GGWCC 2 cut(s) 710, 1024
XapI RAATTY 4 cut(s) 95, 623, 781, 1204
XmaI CCCGGG 1 cut(s) 1244
XmnI GAANNNNTTC 2 cut(s) 1107, 1239
XspI CTAG 4 cut(s) 617, 926, 1128, 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.