Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

51662682 .. 51666548

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGATAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCGCTACCCAAGTTCTCAAGCTCCACTAGCTCTATAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTCTGTCTTCTGTTTTCAATGCCGGGATTGCCAAGGCTTTGACATATGAAGAGGTATTGGGGCAGTCAGTGAGTACAGCAAATGGAGACTTTGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTGCAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTTCCTTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGGGTGCTTATGCAAAATTGGGTGAAGATGCAAATGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATCAGGCAAGTAGGTAGTCCGGATATCCGAGGTCTGAGGAAGAAGGCGGTGCCAATTGTTTATAAAGGGGAAGATAAGCCGGGCTTCTTAAAGAAGCTCACTTTGAAGTTCAAGGAACCAGAGAATACTACATTTTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGTGGCCTTCCTTGGATACCACCATCAAAAGCACTGAGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACTGGGCTGGGTTTATTGACTTTTACTGAGGTCAGGCTGCTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCCGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCTTAACCACCAAGGTTGCCCCAAAGGAGTTTTTGGGTGACATAAAGGAAATTGGAACAGCTCTTCTACCTGTACCTGTGATTAGCAAGGCTCTTCCTGCACCTGAAGAGGCAAGTCCGGCCCCCACTGCTGCTGGTACTGGAGTGAAAGCAGAAGCTGCACTGGAACCTAACGTAGGAGCAGCTGCAGAACCTGTCCCTGAGATAAATTCCGTTCCCAAATCAGAAGTTAAAAAAGAATCATTTCCTGGGATTTCAAAATCCCTTTCTCCATTCCCCTATTATCCAGATTTCAAGCCTCCAACATCTCCGCGCCCATCCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

446

Amino Acids

46.56

Weight (kDa)

5.82

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AccB1I	GGYRCC	2 cut(s)	529, 830
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccII	CGCG	1 cut(s)	1324
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	3 cut(s)	527, 794, 1322
AcsI	RAATTY	2 cut(s)	71, 1219
AcuI	CTGAAG	1 cut(s)	1137
AfaI	GTAC	4 cut(s)	250, 945, 1086, 1150
AfiI	CCNNNNNNNGG	5 cut(s)	726, 727, 925, 981, 1187
AgsI	TTSAA	8 cut(s)	193, 273, 404, 586, 592, 682, 1269, 1306
AhlI	ACTAGT	1 cut(s)	940
AjnI	CCWGG	3 cut(s)	472, 621, 1258
Alw21I	GWGCWC	2 cut(s)	283, 472
Alw26I	GTCTC	1 cut(s)	255
AlwNI	CAGNNNCTG	3 cut(s)	866, 1169, 1205
Ama87I	CYCGRG	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	3 cut(s)	6, 739, 1131
ApoI	RAATTY	2 cut(s)	71, 1219
Asp700I	GAANNNNTTC	1 cut(s)	1254
AspLEI	GCGC	1 cut(s)	1326
AspS9I	GGNCC	4 cut(s)	7, 716, 979, 1132
AsuC2I	CCSGG	2 cut(s)	199, 561
AsuHPI	GGTGA	4 cut(s)	59, 446, 742, 1061
AvaI	CYCGRG	1 cut(s)	720
AvaII	GGWCC	2 cut(s)	716, 979
BaeI	ACNNNNGTAYC	2 cut(s)	1140, 1173
BanI	GGYRCC	2 cut(s)	529, 830
BanII	GRGCYC	3 cut(s)	283, 827, 932
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	283, 472
BccI	CCATC	7 cut(s)	85, 350, 629, 698, 720, 766, 1336
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	3 cut(s)	474, 623, 1260
BciVI	GTATCC	2 cut(s)	744, 790
BcnI	CCSGG	2 cut(s)	199, 561
BcoDI	GTCTC	1 cut(s)	255
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	3 cut(s)	120, 905, 941
BfmI	CTRYAG	3 cut(s)	126, 858, 1197
BfuI	GTATCC	2 cut(s)	744, 790
BglI	GCCNNNNNGGC	1 cut(s)	347
BlpI	GCTNAGC	1 cut(s)	931
Bme1390I	CCNGG	5 cut(s)	199, 474, 561, 623, 1260
Bme18I	GGWCC	2 cut(s)	716, 979
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	4 cut(s)	7, 716, 979, 1132
BmiI	GGNNCC	6 cut(s)	531, 597, 718, 832, 1134, 1179
BmrFI	CCNGG	5 cut(s)	199, 474, 561, 623, 1260
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	1173
Bpu10I	CCTNAGC	3 cut(s)	387, 411, 826
Bpu1102I	GCTNAGC	1 cut(s)	931
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	199, 561
BsaWI	WCCGGW	2 cut(s)	499, 981
Bsc4I	CCNNNNNNNGG	5 cut(s)	726, 727, 925, 981, 1187
Bse1I	ACTGG	4 cut(s)	654, 871, 1156, 1179
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	3 cut(s)	474, 623, 1260
BseGI	GGATG	3 cut(s)	618, 731, 1328
BseLI	CCNNNNNNNGG	5 cut(s)	726, 727, 925, 981, 1187
BseMII	CTCAG	7 cut(s)	506, 648, 761, 840, 882, 945, 1203
BseNI	ACTGG	4 cut(s)	654, 871, 1156, 1179
BseYI	CCCAGC	1 cut(s)	871
BsgI	GTGCAG	4 cut(s)	729, 921, 1095, 1155
Bsh1236I	CGCG	1 cut(s)	1324
BshFI	GGCC	3 cut(s)	8, 741, 1133
BshNI	GGYRCC	2 cut(s)	529, 830
BsiHKAI	GWGCWC	2 cut(s)	283, 472
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	5 cut(s)	198, 500, 560, 982, 1130
BslFI	GGGAC	1 cut(s)	1193
BslI	CCNNNNNNNGG	5 cut(s)	726, 727, 925, 981, 1187
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	1193
BsnI	GGCC	3 cut(s)	8, 741, 1133
BsoBI	CYCGRG	1 cut(s)	720
Bsp1286I	GDGCHC	4 cut(s)	283, 472, 827, 932
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	480
Bsp1720I	GCTNAGC	1 cut(s)	931
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	3 cut(s)	527, 794, 1322
BspANI	GGCC	3 cut(s)	8, 741, 1133
BspCNI	CTCAG	7 cut(s)	507, 649, 762, 839, 883, 944, 1204
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	1324
BspLI	GGNNCC	6 cut(s)	531, 597, 718, 832, 1134, 1179
BspMAI	CTGCAG	2 cut(s)	862, 1201
BspQI	GCTCTTC	2 cut(s)	1080, 1110
BspT107I	GGYRCC	2 cut(s)	529, 830
BsrI	ACTGG	4 cut(s)	654, 871, 1156, 1179
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	5 cut(s)	160, 207, 746, 847, 1023
Bst2UI	CCWGG	3 cut(s)	474, 623, 1260
Bst4CI	ACNGT	2 cut(s)	670, 948
Bst6I	CTCTTC	4 cut(s)	219, 1080, 1110, 1113
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	2 cut(s)	22, 955
BstDSI	CCRYGG	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	1185
BstF5I	GGATG	3 cut(s)	618, 731, 1328
BstFNI	CGCG	1 cut(s)	1324
BstHHI	GCGC	1 cut(s)	1326
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	480
BstNI	CCWGG	3 cut(s)	474, 623, 1260
BstSCI	CCNGG	5 cut(s)	197, 472, 559, 621, 1258
BstSFI	CTRYAG	3 cut(s)	126, 858, 1197
BstUI	CGCG	1 cut(s)	1324
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	2 cut(s)	744, 790
BsuRI	GGCC	3 cut(s)	8, 741, 1133
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	618, 731, 1328
BtsI	GCAGTG	2 cut(s)	80, 1137
BtsIMutI	CAGTG	6 cut(s)	80, 249, 666, 767, 1137, 1172
Cac8I	GCNNGC	2 cut(s)	22, 955
CaiI	CAGNNNCTG	3 cut(s)	866, 1169, 1205
CfoI	GCGC	1 cut(s)	1326
Cfr13I	GGNCC	4 cut(s)	7, 716, 979, 1132
Csp6I	GTAC	4 cut(s)	249, 944, 1085, 1149
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	1 cut(s)	161
CviQI	GTAC	4 cut(s)	249, 944, 1085, 1149
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
Eam1104I	CTCTTC	4 cut(s)	219, 1080, 1110, 1113
EarI	CTCTTC	4 cut(s)	219, 1080, 1110, 1113
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	5 cut(s)	160, 207, 746, 847, 1023
Eco24I	GRGCYC	3 cut(s)	283, 827, 932
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	716, 979
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	720
EcoICRI	GAGCTC	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	1185
EcoO109I	RGGNCCY	2 cut(s)	7, 716
EcoRII	CCWGG	3 cut(s)	472, 621, 1258
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	5 cut(s)	160, 207, 746, 847, 1023
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	3 cut(s)	283, 827, 932
ErhI	CCWWGG	5 cut(s)	160, 207, 746, 847, 1023
FaeI	CATG	1 cut(s)	164
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	1193
FatI	CATG	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	220
FokI	GGATG	3 cut(s)	605, 738, 1315
FriOI	GRGCYC	3 cut(s)	283, 827, 932
FspBI	CTAG	3 cut(s)	120, 905, 941
GlaI	GCGC	1 cut(s)	1325
GsaI	CCCAGC	1 cut(s)	875
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	3 cut(s)	8, 741, 1133
HapII	CCGG	5 cut(s)	198, 500, 560, 982, 1130
HhaI	GCGC	1 cut(s)	1326
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	1324
HinP1I	GCGC	1 cut(s)	1324
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	4 cut(s)	269, 382, 404, 1250
HpaII	CCGG	5 cut(s)	198, 500, 560, 982, 1130
HphI	GGTGA	4 cut(s)	59, 446, 742, 1061
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	5 cut(s)	509, 516, 646, 818, 1237
Hpy188III	TCNNGA	3 cut(s)	284, 500, 1298
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	517, 707, 752
HpyCH4III	ACNGT	2 cut(s)	670, 948
HpyCH4IV	ACGT	1 cut(s)	1185
HpySE526I	ACGT	1 cut(s)	1185
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	1324
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	480
LguI	GCTCTTC	2 cut(s)	1080, 1110
LmnI	GCTCC	3 cut(s)	119, 278, 1190
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	120, 905, 941
MaeII	ACGT	1 cut(s)	1185
MaeIII	GTNAC	3 cut(s)	366, 664, 1049
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	8 cut(s)	174, 236, 449, 532, 563, 1067, 1097, 1130
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	4 cut(s)	283, 472, 827, 932
MluCI	AATT	6 cut(s)	71, 321, 428, 534, 1062, 1219
MmeI	TCCRAC	3 cut(s)	796, 943, 1337
Mph1103I	ATGCAT	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	1254
MseI	TTAA	4 cut(s)	306, 569, 1016, 1242
MspA1I	CMGCKG	2 cut(s)	935, 1196
MspI	CCGG	5 cut(s)	198, 500, 560, 982, 1130
MspR9I	CCNGG	5 cut(s)	199, 474, 561, 623, 1260
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	3 cut(s)	474, 623, 1260
MvnI	CGCG	1 cut(s)	1324
NciI	CCSGG	2 cut(s)	199, 561
NcoI	CCATGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	6 cut(s)	531, 597, 718, 832, 1134, 1179
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	3 cut(s)	366, 664, 1049
NsiI	ATGCAT	1 cut(s)	451
PciSI	GCTCTTC	2 cut(s)	1080, 1110
PdmI	GAANNNNTTC	1 cut(s)	1254
PfeI	GAWTC	4 cut(s)	269, 382, 404, 1250
PflMI	CCANNNNNTGG	1 cut(s)	925
PfoI	TCCNGGA	1 cut(s)	621
PpuMI	RGGWCCY	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	3 cut(s)	472, 621, 1258
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	3 cut(s)	472, 621, 1258
PspN4I	GGNNCC	6 cut(s)	531, 597, 718, 832, 1134, 1179
PspPI	GGNCC	4 cut(s)	7, 716, 979, 1132
PspPPI	RGGWCCY	1 cut(s)	716
PstI	CTGCAG	2 cut(s)	862, 1201
PstNI	CAGNNNCTG	3 cut(s)	866, 1169, 1205
PvuII	CAGCTG	2 cut(s)	935, 1196
RsaI	GTAC	4 cut(s)	250, 945, 1086, 1150
RsaNI	GTAC	4 cut(s)	249, 944, 1085, 1149
SacI	GAGCTC	1 cut(s)	283
SapI	GCTCTTC	2 cut(s)	1080, 1110
SaqAI	TTAA	4 cut(s)	306, 569, 1016, 1242
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	4 cut(s)	7, 716, 979, 1132
ScrFI	CCNGG	5 cut(s)	199, 474, 561, 623, 1260
SduI	GDGCHC	4 cut(s)	283, 472, 827, 932
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	3 cut(s)	126, 858, 1197
SinI	GGWCC	2 cut(s)	716, 979
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	940
Sse9I	AATT	6 cut(s)	71, 321, 428, 534, 1062, 1219
SsiI	CCGC	3 cut(s)	527, 794, 1322
SspMI	CTAG	3 cut(s)	120, 905, 941
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	5 cut(s)	197, 472, 559, 621, 1258
StyI	CCWWGG	5 cut(s)	160, 207, 746, 847, 1023
TaaI	ACNGT	2 cut(s)	670, 948
TaiI	ACGT	1 cut(s)	1188
TasI	AATT	6 cut(s)	71, 321, 428, 534, 1062, 1219
TatI	WGTACW	2 cut(s)	248, 943
TfiI	GAWTC	4 cut(s)	269, 382, 404, 1250
Tru1I	TTAA	4 cut(s)	306, 569, 1016, 1242
Tru9I	TTAA	4 cut(s)	306, 569, 1016, 1242
TscAI	CASTG	6 cut(s)	87, 249, 673, 774, 1144, 1179
TseFI	GTSAC	3 cut(s)	366, 664, 1049
Tsp45I	GTSAC	3 cut(s)	366, 664, 1049
TspDTI	ATGAA	3 cut(s)	135, 237, 607
TspGWI	ACGGA	1 cut(s)	1213
TspRI	CASTG	6 cut(s)	87, 249, 673, 774, 1144, 1179
Van91I	CCANNNNNTGG	1 cut(s)	925
VpaK11BI	GGWCC	2 cut(s)	716, 979
XagI	CCTNNNNNAGG	1 cut(s)	1185
XapI	RAATTY	2 cut(s)	71, 1219
XmnI	GAANNNNTTC	1 cut(s)	1254
XspI	CTAG	3 cut(s)	120, 905, 941
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.