Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Reverse (-)

13923464 .. 13927194

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACTCCTATATCAGTTCTTGGTGATAGAAAAAAAGAACCCAGAAAATTCCCATCATTGCCCTCCATTTCACTACCCAAGTTCTCAAGCTCTACTAGCTATAGCACCAAGGCATCACAGGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCATCTGTTTTCAATGCTGGGTTTGCCAAGGCTTTGACATATGAAGAAGCATTGGGTCAGTCAGTGAGTACAGCAACCGGAGACTTTGATACAGATAAAGTTCTTGACAATGTTATAAGCTTTGTTAATGACAACCCTGCAGTTATAGCTGGTGGGTTTGTCGTCTTGGCTGTTCCTTTAGTTTTGTCACAGGTGCTAAAGAAGCCTAAGCCTTTTGGTGTTGAGTCTGCTAAGAGTGCTTATGCAAAATTGGGTGAAGATGCAAATGCTCTTCTGGTGGATATAAGAGCACCAGGGGAGATAAGGCAAGTCGGTAGTCCGGATATCCGAGGTTTGGGGAAGAAGGCAGTGCCAATTGTTTACAAAGGGGAAGATAAGCCAGGCTTCTTAAAGAAGCTCTCTTTGAAGTTCAAGGAACCAGAGAATACTACATTGTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCCGAGTTGGTCACAGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCCGAAGGACCCAGAGGATGGGTGAGTAGTGGCCTTCCTTGGATACCACCACCAAAAGTACTGAGTCTTGATTTTGGCAATTTAGCTGATGCTTTCAGTGGCGCTGTTGGAGAGGGTTCAGGTGCCTTGTCTGTTTCCCTTGGGATTGCTGCAGTGACTGGGCTGGGTTTATTGGCATTTACTGAGGTAGAAACAATCCTCCAACTTTTGGGATCAGCTGCGCTAGTACAGTTTGCAAGCAAGAAACTTCTTTTTGCTGAGGACCGGAATAAAACTCTACAAGAAGTGGATACGTTCTTGAGCACCAAGGTTGCACCAAAGGAGCTTTTGGGTGACATAAAGCAAATCGGAATAGCTCTTCTACCTCCTGTTACTAGCAAGTCTCTTCCTGCACCTGCAGAGGCAAGTCCAGCGCCCACTGCTGCTGATACTGTAGTTAAAGCAGAAGCTTCACCAGAACCTAAAGTAGAAGCAGCTGCAGAACCTGCCCCTGAGATCAATTCCGTTCCCAAAGCAGAAGTCAAAGAAGAATCCCTTCCTGTCAATTCAAGACCACTTTCTCCATTCCCCTATTATCCGGACTTCAAGCCCCCAACATCTCCGCGCCCATCTCAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

445

Amino Acids

46.55

Weight (kDa)

5.62

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AarI	CACCTGC	1 cut(s)	1117
Acc36I	ACCTGC	2 cut(s)	1117, 1207
AccB1I	GGYRCC	2 cut(s)	713, 836
AccB7I	CCANNNNNTGG	2 cut(s)	732, 922
AccII	CGCG	1 cut(s)	1318
AccIII	TCCGGA	2 cut(s)	505, 1291
AciI	CCGC	1 cut(s)	1316
AclWI	GGATC	1 cut(s)	934
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	3 cut(s)	256, 774, 942
AfiI	CCNNNNNNNGG	3 cut(s)	520, 732, 922
AgsI	TTSAA	6 cut(s)	199, 592, 598, 688, 1263, 1300
AjnI	CCWGG	3 cut(s)	478, 565, 627
Alw21I	GWGCWC	2 cut(s)	478, 1019
Alw26I	GTCTC	2 cut(s)	261, 1101
AlwI	GGATC	1 cut(s)	934
AlwNI	CAGNNNCTG	2 cut(s)	872, 1199
Aor13HI	TCCGGA	2 cut(s)	505, 1291
AoxI	GGCC	2 cut(s)	6, 745
ApeKI	GCWGC	7 cut(s)	17, 692, 863, 932, 1136, 1187, 1190
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	1218, 1250
Asp700I	GAANNNNTTC	1 cut(s)	1248
AspLEI	GCGC	4 cut(s)	818, 937, 1129, 1320
AspS9I	GGNCC	3 cut(s)	7, 722, 976
AsuHPI	GGTGA	5 cut(s)	59, 452, 748, 1058, 1158
AvaII	GGWCC	2 cut(s)	722, 976
BaeI	ACNNNNGTAYC	2 cut(s)	1134, 1167
BanI	GGYRCC	2 cut(s)	713, 836
Bbv12I	GWGCWC	2 cut(s)	478, 1019
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	7 cut(s)	29, 679, 850, 919, 1123, 1177, 1199
BccI	CCATC	5 cut(s)	85, 635, 704, 726, 1330
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	3 cut(s)	480, 567, 629
BciVI	GTATCC	2 cut(s)	750, 997
BcoDI	GTCTC	2 cut(s)	261, 1101
BfaI	CTAG	3 cut(s)	120, 938, 1089
BfmI	CTRYAG	6 cut(s)	124, 324, 864, 1110, 1146, 1191
BfoI	RGCGCY	2 cut(s)	819, 1130
BfuAI	ACCTGC	2 cut(s)	1117, 1207
BfuI	GTATCC	2 cut(s)	750, 997
BisI	GCNGC	7 cut(s)	18, 693, 864, 933, 1137, 1188, 1191
BlsI	GCNGC	7 cut(s)	19, 694, 865, 934, 1138, 1189, 1192
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	3 cut(s)	480, 567, 629
Bme18I	GGWCC	2 cut(s)	722, 976
BmgT120I	GGNCC	3 cut(s)	7, 722, 976
BmiI	GGNNCC	4 cut(s)	603, 715, 724, 838
BmrFI	CCNGG	3 cut(s)	480, 567, 629
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	3 cut(s)	146, 436, 793
BmuI	ACTGGG	1 cut(s)	882
Bpu10I	CCTNAGC	2 cut(s)	393, 972
BpuEI	CTTGAG	2 cut(s)	94, 1033
BsaJI	CCNNGG	8 cut(s)	132, 166, 213, 479, 514, 752, 853, 1020
BsaWI	WCCGGW	4 cut(s)	263, 505, 978, 1291
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 732, 922
Bse1I	ACTGG	2 cut(s)	660, 877
Bse3DI	GCAATG	1 cut(s)	80
BseAI	TCCGGA	2 cut(s)	505, 1291
BseBI	CCWGG	3 cut(s)	480, 567, 629
BseDI	CCNNGG	8 cut(s)	132, 166, 213, 479, 514, 752, 853, 1020
BseGI	GGATG	2 cut(s)	624, 737
BseLI	CCNNNNNNNGG	3 cut(s)	520, 732, 922
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	4 cut(s)	767, 888, 963, 1197
BseNI	ACTGG	2 cut(s)	660, 877
BseXI	GCAGC	7 cut(s)	29, 679, 850, 919, 1123, 1177, 1199
BseYI	CCCAGC	2 cut(s)	203, 877
BsgI	GTGCAG	1 cut(s)	1089
Bsh1236I	CGCG	1 cut(s)	1318
BshFI	GGCC	2 cut(s)	8, 747
BshNI	GGYRCC	2 cut(s)	713, 836
BsiHKAI	GWGCWC	2 cut(s)	478, 1019
BsiSI	CCGG	4 cut(s)	264, 506, 979, 1292
BslI	CCNNNNNNNGG	3 cut(s)	520, 732, 922
BsmAI	GTCTC	2 cut(s)	261, 1101
BsnI	GGCC	2 cut(s)	8, 747
Bsp1286I	GDGCHC	2 cut(s)	478, 1019
Bsp13I	TCCGGA	2 cut(s)	505, 1291
Bsp143I	GATC	2 cut(s)	926, 1209
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	1316
BspANI	GGCC	2 cut(s)	8, 747
BspCNI	CTCAG	4 cut(s)	768, 889, 964, 1198
BspEI	TCCGGA	2 cut(s)	505, 1291
BspFNI	CGCG	1 cut(s)	1318
BspLI	GGNNCC	4 cut(s)	603, 715, 724, 838
BspMAI	CTGCAG	4 cut(s)	328, 868, 1114, 1195
BspMI	ACCTGC	2 cut(s)	1117, 1207
BspPI	GGATC	1 cut(s)	934
BspQI	GCTCTTC	2 cut(s)	462, 1077
BspT107I	GGYRCC	2 cut(s)	713, 836
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	660, 877
BssECI	CCNNGG	8 cut(s)	132, 166, 213, 479, 514, 752, 853, 1020
BssMI	GATC	2 cut(s)	926, 1209
BssT1I	CCWWGG	6 cut(s)	132, 166, 213, 752, 853, 1020
Bst2UI	CCWGG	3 cut(s)	480, 567, 629
Bst4CI	ACNGT	4 cut(s)	676, 945, 1147, 1332
Bst6I	CTCTTC	3 cut(s)	462, 1077, 1104
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	22, 952
BstDEI	CTNAG	7 cut(s)	156, 393, 417, 776, 897, 972, 1206
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	624, 737
BstFNI	CGCG	1 cut(s)	1318
BstH2I	RGCGCY	2 cut(s)	819, 1130
BstHHI	GCGC	4 cut(s)	818, 937, 1129, 1320
BstKTI	GATC	2 cut(s)	929, 1212
BstMAI	GTCTC	2 cut(s)	261, 1101
BstMBI	GATC	2 cut(s)	926, 1209
BstNI	CCWGG	3 cut(s)	480, 567, 629
BstSCI	CCNGG	3 cut(s)	478, 565, 627
BstSFI	CTRYAG	6 cut(s)	124, 324, 864, 1110, 1146, 1191
BstUI	CGCG	1 cut(s)	1318
BstV1I	GCAGC	7 cut(s)	29, 679, 850, 919, 1123, 1177, 1199
BsuI	GTATCC	2 cut(s)	750, 997
BsuRI	GGCC	2 cut(s)	8, 747
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	624, 737
BtsI	GCAGTG	3 cut(s)	540, 873, 1131
BtsIMutI	CAGTG	5 cut(s)	255, 540, 817, 873, 1131
BveI	ACCTGC	2 cut(s)	1117, 1207
Cac8I	GCNNGC	2 cut(s)	22, 952
CaiI	CAGNNNCTG	2 cut(s)	872, 1199
CfoI	GCGC	4 cut(s)	818, 937, 1129, 1320
Cfr13I	GGNCC	3 cut(s)	7, 722, 976
Csp6I	GTAC	3 cut(s)	255, 773, 941
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	3 cut(s)	255, 773, 941
DdeI	CTNAG	7 cut(s)	156, 393, 417, 776, 897, 972, 1206
DpnI	GATC	2 cut(s)	928, 1211
DpnII	GATC	2 cut(s)	926, 1209
Eam1104I	CTCTTC	3 cut(s)	462, 1077, 1104
EarI	CTCTTC	3 cut(s)	462, 1077, 1104
Eco130I	CCWWGG	6 cut(s)	132, 166, 213, 752, 853, 1020
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	722, 976
EcoO109I	RGGNCCY	2 cut(s)	7, 722
EcoRII	CCWGG	3 cut(s)	478, 565, 627
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	6 cut(s)	132, 166, 213, 752, 853, 1020
ErhI	CCWWGG	6 cut(s)	132, 166, 213, 752, 853, 1020
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	4 cut(s)	554, 586, 1233, 1265
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	7 cut(s)	18, 693, 864, 933, 1137, 1188, 1191
FokI	GGATG	2 cut(s)	611, 744
Fsp4HI	GCNGC	7 cut(s)	18, 693, 864, 933, 1137, 1188, 1191
FspBI	CTAG	3 cut(s)	120, 938, 1089
GlaI	GCGC	4 cut(s)	817, 936, 1128, 1319
GluI	GCNGC	7 cut(s)	18, 693, 864, 933, 1137, 1188, 1191
GsaI	CCCAGC	2 cut(s)	207, 881
HaeII	RGCGCY	2 cut(s)	819, 1130
HaeIII	GGCC	2 cut(s)	8, 747
HapII	CCGG	4 cut(s)	264, 506, 979, 1292
HhaI	GCGC	4 cut(s)	818, 937, 1129, 1320
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	4 cut(s)	816, 935, 1127, 1318
HinP1I	GCGC	4 cut(s)	816, 935, 1127, 1318
HindIII	AAGCTT	3 cut(s)	22, 304, 1161
HinfI	GANTC	4 cut(s)	28, 410, 778, 1244
HpaII	CCGG	4 cut(s)	264, 506, 979, 1292
HphI	GGTGA	5 cut(s)	59, 452, 748, 1058, 1158
Hpy166II	GTNNAC	2 cut(s)	173, 547
Hpy188I	TCNGA	3 cut(s)	515, 652, 1064
Hpy188III	TCNNGA	6 cut(s)	290, 506, 782, 1012, 1263, 1292
Hpy8I	GTNNAC	2 cut(s)	173, 547
HpyAV	CCTTC	4 cut(s)	523, 713, 758, 1259
HpyCH4III	ACNGT	4 cut(s)	676, 945, 1147, 1332
HpyCH4IV	ACGT	1 cut(s)	1007
HpyF3I	CTNAG	7 cut(s)	156, 393, 417, 776, 897, 972, 1206
HpySE526I	ACGT	1 cut(s)	1007
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	4 cut(s)	816, 935, 1127, 1318
Kpn2I	TCCGGA	2 cut(s)	505, 1291
Kzo9I	GATC	2 cut(s)	926, 1209
LguI	GCTCTTC	2 cut(s)	462, 1077
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	7 cut(s)	29, 679, 850, 919, 1123, 1177, 1199
LweI	GCATC	3 cut(s)	146, 436, 793
MaeI	CTAG	3 cut(s)	120, 938, 1089
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	5 cut(s)	372, 670, 868, 1046, 1084
MalI	GATC	2 cut(s)	928, 1211
MboI	GATC	2 cut(s)	926, 1209
MboII	GAAGA	8 cut(s)	242, 449, 455, 538, 569, 1064, 1091, 1253
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	478, 1019
MluCI	AATT	6 cut(s)	71, 434, 540, 793, 1213, 1258
MlyI	GAGTC	3 cut(s)	22, 419, 787
MmeI	TCCRAC	2 cut(s)	802, 940
MroI	TCCGGA	2 cut(s)	505, 1291
MroXI	GAANNNNTTC	1 cut(s)	1248
MseI	TTAA	3 cut(s)	312, 575, 1152
MspA1I	CMGCKG	2 cut(s)	932, 1190
MspI	CCGG	4 cut(s)	264, 506, 979, 1292
MspR9I	CCNGG	3 cut(s)	480, 567, 629
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	480, 567, 629
MvnI	CGCG	1 cut(s)	1318
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	2 cut(s)	926, 1209
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	4 cut(s)	603, 715, 724, 838
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	4 cut(s)	372, 670, 868, 1046
PaqCI	CACCTGC	1 cut(s)	1117
PciSI	GCTCTTC	2 cut(s)	462, 1077
PdmI	GAANNNNTTC	1 cut(s)	1248
PfeI	GAWTC	1 cut(s)	1244
PflMI	CCANNNNNTGG	2 cut(s)	732, 922
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	7 cut(s)	19, 694, 865, 934, 1138, 1189, 1192
PleI	GAGTC	3 cut(s)	22, 418, 786
PpsI	GAGTC	3 cut(s)	22, 418, 786
PpuMI	RGGWCCY	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	478, 565, 627
PspFI	CCCAGC	2 cut(s)	203, 877
PspGI	CCWGG	3 cut(s)	478, 565, 627
PspN4I	GGNNCC	4 cut(s)	603, 715, 724, 838
PspPI	GGNCC	3 cut(s)	7, 722, 976
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	4 cut(s)	328, 868, 1114, 1195
PstNI	CAGNNNCTG	2 cut(s)	872, 1199
PvuII	CAGCTG	2 cut(s)	932, 1190
RsaI	GTAC	3 cut(s)	256, 774, 942
RsaNI	GTAC	3 cut(s)	255, 773, 941
SapI	GCTCTTC	2 cut(s)	462, 1077
SaqAI	TTAA	3 cut(s)	312, 575, 1152
SatI	GCNGC	7 cut(s)	18, 693, 864, 933, 1137, 1188, 1191
Sau3AI	GATC	2 cut(s)	926, 1209
Sau96I	GGNCC	3 cut(s)	7, 722, 976
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	22, 419, 787
ScrFI	CCNGG	3 cut(s)	480, 567, 629
SduI	GDGCHC	2 cut(s)	478, 1019
SfaNI	GCATC	3 cut(s)	146, 436, 793
SfcI	CTRYAG	6 cut(s)	124, 324, 864, 1110, 1146, 1191
SinI	GGWCC	2 cut(s)	722, 976
SmlI	CTYRAG	2 cut(s)	109, 1012
SmoI	CTYRAG	2 cut(s)	109, 1012
Sse9I	AATT	6 cut(s)	71, 434, 540, 793, 1213, 1258
SsiI	CCGC	1 cut(s)	1316
SspMI	CTAG	3 cut(s)	120, 938, 1089
StyD4I	CCNGG	3 cut(s)	478, 565, 627
StyI	CCWWGG	6 cut(s)	132, 166, 213, 752, 853, 1020
TaaI	ACNGT	4 cut(s)	676, 945, 1147, 1332
TaiI	ACGT	1 cut(s)	1010
TasI	AATT	6 cut(s)	71, 434, 540, 793, 1213, 1258
TatI	WGTACW	3 cut(s)	254, 772, 940
TfiI	GAWTC	1 cut(s)	1244
Tru1I	TTAA	3 cut(s)	312, 575, 1152
Tru9I	TTAA	3 cut(s)	312, 575, 1152
TscAI	CASTG	5 cut(s)	255, 540, 817, 873, 1138
TseFI	GTSAC	4 cut(s)	372, 670, 868, 1046
TseI	GCWGC	7 cut(s)	17, 692, 863, 932, 1136, 1187, 1190
Tsp45I	GTSAC	4 cut(s)	372, 670, 868, 1046
TspDTI	ATGAA	3 cut(s)	141, 243, 613
TspGWI	ACGGA	1 cut(s)	1207
TspRI	CASTG	5 cut(s)	255, 540, 817, 873, 1138
Van91I	CCANNNNNTGG	2 cut(s)	732, 922
VpaK11BI	GGWCC	2 cut(s)	722, 976
XapI	RAATTY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	1248
XspI	CTAG	3 cut(s)	120, 938, 1089
ZrmI	AGTACT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.