Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010301

Physical Location & Seq

Genomic Coordinates Forward (+)

17182616 .. 17186302

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAGGCCCTCAATGCAGCAAGCTTGACCCCTATATCAGTTCTTGGTGATAGAAAAAAAGAACCCAGAAAATTCCCATCACTGCCCTCCATTTCGCTACCCAAGTTCTCAAGCTCCACTAGCTTTAGTGCTCAAGCTTCACAAGAGGGTTCATCTAAGAGCTTCCATGGTGGACTATTGCTTTTGTCTTCTGTTTTCAATGCTGGGTTTGCCAAGGCTTTGACATATGAGGAAGCATTGGGGCAGTCAGTGAGTGCAGCAACTGGAGACTTTGATTCAAGTGGAGCTCTTGACAATGTTATTAGCTTTGTTAATGACAACCCTGCAATTATAGCTGGTGGGTTTGCCATCTTGGCTGTTCCTTTGGTTTTGTCACAGGTGCTAAAGAATCCTAAGCCATTTGGTGTTGAATCTGCTAAGAGTGCTTATGCAAAATTGGGTGAAGATGCAAATGCATTTCTTGTTGATATAAGAGCACCAGGGGAGATAAGGCAAGCAGGTAGTCCGGATATCCGAGGTCTGGGGAAGAAGGCAGTGCCAATTGTTTATAAAGGGGAAGATAAGTCGGGCTTTTTAAAGAAGCTCTCTTTGAAGTTCAAGGAACCAGAGAATGCTACATTTTTCATCCTGGATAAGTTTGATGGGAACTCCGAACTGGTTGCTGAGTTGGTCACTGTAAATGGGTTCAAAGCTGCTTATGCCATAAAAGATGGTGCAGAAGGACCCCGAGGATGGGTGAGTAGCGGCCTTCCTTGGATACCACCATCAAAAGCACTGAGCGTTGATTTTGGCAGTTTAGCGGATACTATTAGTGGTGCTGTCGGAGAGGGCTCAGGTGCCTTGTCTGTTTCCCTTGGTATTGCTGCAGCAACCGGGCTGGGTTTTTTGGCTTTTACTGAGGTCAGGCTGCTAGAAACAATCCTCCAACTTTTGGGCTCAGCTGCACTAGTACAGTTTGCCAGCAAGAAACTTCTTTTTGCCGAGGACCGGAATAAAACTCTACAAGAAGTGGATAGTTTCTTAACCACCAAGGTTGCCCCAAAGGAGCTTTTGGGTGACATAAAGGAAATCGGAATAGCTCTTCTACCTGTACCTGTGAATAGCAAGGCTCTTCCTGCACCTGAAGTGGCAAGTCCAGCCCCCACTGCTGCTGATACTGGAGTGAAAGCAGAAGCTGCGCTGGAGCCTAAAGTAGAAGCAGCTGCAGAACCTGCCCCTGAGATAAATTCCGTTCCCAAAGCAGAAGTTAAAAAAGAATCATTTCCTGGGATTTCAAAATCCCTTTCTCCATTCCCCTATTATCCAGATTTCAAGCCTCCAACATCTCCGCGCCCATCCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

448

Amino Acids

46.66

Weight (kDa)

5.62

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01050 AT4G01050
fragaria_vesca	FvH4_7g16190
malus_domestica	MD01G1078500.v1.1 MD07G1147500.v1.1
prunus_persica	Prupe.2G185500_v2.0.a1 Prupe.2G185500_v2.0.a1
pyrus_communis	pycom01g10700 pycom07g14660
rosa_chinensis	RchiOBHm_Chr1g0359191
rosa_laevigata	RLG00000027894
rosa_multiflora	Rmu_co8334595.1_g000001 Rmu_sc0038613.1_g000001 Rmu_ssc0000135.1_g000018
rosa_roxburghii	Rroxscaffold_4G00297260
rosa_rugosa	Rorug01G0268300
rosa_samantha	Rh1AG282200 Rh1BG248600 Rh1CG266400 Rh1DG277600
rosa_wichuraiana	Rw1G025060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	2 cut(s)	488, 1219
AccB1I	GGYRCC	1 cut(s)	836
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccII	CGCG	1 cut(s)	1330
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	3 cut(s)	744, 800, 1328
AcsI	RAATTY	2 cut(s)	71, 1225
AcuI	CTGAAG	1 cut(s)	1143
AfaI	GTAC	2 cut(s)	951, 1092
AfiI	CCNNNNNNNGG	5 cut(s)	520, 732, 733, 931, 987
AgsI	TTSAA	8 cut(s)	199, 279, 410, 592, 598, 688, 1275, 1312
AhlI	ACTAGT	1 cut(s)	946
AjnI	CCWGG	3 cut(s)	478, 627, 1264
Alw21I	GWGCWC	3 cut(s)	133, 289, 478
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	3 cut(s)	263, 1175, 1211
Ama87I	CYCGRG	1 cut(s)	726
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	6, 745
ApoI	RAATTY	2 cut(s)	71, 1225
Asp700I	GAANNNNTTC	1 cut(s)	1260
AspLEI	GCGC	2 cut(s)	1180, 1332
AspS9I	GGNCC	3 cut(s)	7, 722, 985
AsuC2I	CCSGG	1 cut(s)	874
AsuHPI	GGTGA	4 cut(s)	59, 452, 748, 1067
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	2 cut(s)	722, 985
BaeI	ACNNNNGTAYC	2 cut(s)	1146, 1179
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	3 cut(s)	289, 833, 938
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	3 cut(s)	133, 289, 478
BccI	CCATC	7 cut(s)	85, 356, 635, 704, 726, 772, 1342
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	3 cut(s)	480, 629, 1266
BciVI	GTATCC	2 cut(s)	750, 796
BcnI	CCSGG	1 cut(s)	874
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	946
BfaI	CTAG	3 cut(s)	120, 911, 947
BfmI	CTRYAG	2 cut(s)	864, 1203
BfuAI	ACCTGC	2 cut(s)	488, 1219
BfuI	GTATCC	2 cut(s)	750, 796
BglI	GCCNNNNNGGC	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	937
Bme1390I	CCNGG	4 cut(s)	480, 629, 874, 1266
Bme18I	GGWCC	2 cut(s)	722, 985
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	7, 722, 985
BmiI	GGNNCC	4 cut(s)	603, 724, 838, 1185
BmrFI	CCNGG	4 cut(s)	480, 629, 874, 1266
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	3 cut(s)	285, 1179, 1202
Bpu10I	CCTNAGC	2 cut(s)	393, 832
Bpu1102I	GCTNAGC	1 cut(s)	937
BpuEI	CTTGAG	2 cut(s)	94, 117
BpuMI	CCSGG	1 cut(s)	874
BsaWI	WCCGGW	2 cut(s)	505, 987
Bsc4I	CCNNNNNNNGG	5 cut(s)	520, 732, 733, 931, 987
Bse1I	ACTGG	3 cut(s)	268, 660, 1162
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	3 cut(s)	480, 629, 1266
BseGI	GGATG	3 cut(s)	624, 737, 1334
BseLI	CCNNNNNNNGG	5 cut(s)	520, 732, 733, 931, 987
BseMII	CTCAG	6 cut(s)	654, 767, 846, 888, 951, 1209
BseNI	ACTGG	3 cut(s)	268, 660, 1162
BseYI	CCCAGC	2 cut(s)	203, 877
BsgI	GTGCAG	4 cut(s)	276, 735, 927, 1101
Bsh1236I	CGCG	1 cut(s)	1330
BshFI	GGCC	2 cut(s)	8, 747
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	3 cut(s)	133, 289, 478
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	3 cut(s)	506, 873, 988
BslI	CCNNNNNNNGG	5 cut(s)	520, 732, 733, 931, 987
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	8, 747
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	5 cut(s)	133, 289, 478, 833, 938
Bsp13I	TCCGGA	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	937
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	3 cut(s)	744, 800, 1328
BspANI	GGCC	2 cut(s)	8, 747
BspCNI	CTCAG	6 cut(s)	655, 768, 845, 889, 950, 1210
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	1330
BspLI	GGNNCC	4 cut(s)	603, 724, 838, 1185
BspMAI	CTGCAG	2 cut(s)	868, 1207
BspMI	ACCTGC	2 cut(s)	488, 1219
BspQI	GCTCTTC	2 cut(s)	1086, 1116
BspT107I	GGYRCC	1 cut(s)	836
BsrI	ACTGG	3 cut(s)	268, 660, 1162
BssT1I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1029
Bst2UI	CCWGG	3 cut(s)	480, 629, 1266
Bst4CI	ACNGT	2 cut(s)	676, 954
Bst6I	CTCTTC	2 cut(s)	1086, 1116
BstAPI	GCANNNNNTGC	2 cut(s)	1175, 1211
BstC8I	GCNNGC	3 cut(s)	22, 495, 961
BstDEI	CTNAG	9 cut(s)	156, 393, 417, 663, 776, 832, 897, 937, 1218
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	624, 737, 1334
BstFNI	CGCG	1 cut(s)	1330
BstHHI	GCGC	2 cut(s)	1180, 1332
BstMAI	GTCTC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	480, 629, 1266
BstSCI	CCNGG	4 cut(s)	478, 627, 872, 1264
BstSFI	CTRYAG	2 cut(s)	864, 1203
BstUI	CGCG	1 cut(s)	1330
BstV2I	GAAGAC	1 cut(s)	180
BsuI	GTATCC	2 cut(s)	750, 796
BsuRI	GGCC	2 cut(s)	8, 747
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	624, 737, 1334
BtsI	GCAGTG	3 cut(s)	80, 540, 1143
BtsIMutI	CAGTG	6 cut(s)	80, 255, 540, 672, 773, 1143
BveI	ACCTGC	2 cut(s)	488, 1219
Cac8I	GCNNGC	3 cut(s)	22, 495, 961
CaiI	CAGNNNCTG	3 cut(s)	263, 1175, 1211
CfoI	GCGC	2 cut(s)	1180, 1332
Cfr13I	GGNCC	3 cut(s)	7, 722, 985
Csp6I	GTAC	2 cut(s)	950, 1091
CspCI	CAANNNNNGTGG	2 cut(s)	1015, 1050
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	2 cut(s)	950, 1091
DdeI	CTNAG	9 cut(s)	156, 393, 417, 663, 776, 832, 897, 937, 1218
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	1086, 1116
EarI	CTCTTC	2 cut(s)	1086, 1116
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1029
Eco24I	GRGCYC	3 cut(s)	289, 833, 938
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	722, 985
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	1143
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	7, 722
EcoRII	CCWGG	3 cut(s)	478, 627, 1264
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	5 cut(s)	166, 213, 752, 853, 1029
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	3 cut(s)	289, 833, 938
ErhI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1029
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	226
FokI	GGATG	3 cut(s)	611, 744, 1321
FriOI	GRGCYC	3 cut(s)	289, 833, 938
FspBI	CTAG	3 cut(s)	120, 911, 947
GlaI	GCGC	2 cut(s)	1179, 1331
GsaI	CCCAGC	2 cut(s)	207, 881
GsuI	CTGGAG	3 cut(s)	285, 1179, 1202
HaeIII	GGCC	2 cut(s)	8, 747
HapII	CCGG	3 cut(s)	506, 873, 988
HhaI	GCGC	2 cut(s)	1180, 1332
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	2 cut(s)	1178, 1330
HinP1I	GCGC	2 cut(s)	1178, 1330
HindIII	AAGCTT	2 cut(s)	22, 135
HinfI	GANTC	4 cut(s)	275, 388, 410, 1256
HpaII	CCGG	3 cut(s)	506, 873, 988
HphI	GGTGA	4 cut(s)	59, 452, 748, 1067
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	515, 652, 824, 1073
Hpy188III	TCNNGA	3 cut(s)	290, 506, 1304
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	523, 713, 758
HpyCH4III	ACNGT	2 cut(s)	676, 954
HpyF3I	CTNAG	9 cut(s)	156, 393, 417, 663, 776, 832, 897, 937, 1218
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	2 cut(s)	1178, 1330
Kpn2I	TCCGGA	1 cut(s)	505
LguI	GCTCTTC	2 cut(s)	1086, 1116
LmnI	GCTCC	4 cut(s)	119, 284, 1045, 1183
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	120, 911, 947
MaeIII	GTNAC	3 cut(s)	372, 670, 1055
MboII	GAAGA	6 cut(s)	180, 455, 538, 569, 1073, 1103
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	5 cut(s)	133, 289, 478, 833, 938
MluCI	AATT	5 cut(s)	71, 327, 434, 540, 1225
MmeI	TCCRAC	3 cut(s)	802, 949, 1343
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	1260
MseI	TTAA	4 cut(s)	312, 575, 1022, 1248
MspA1I	CMGCKG	2 cut(s)	941, 1202
MspI	CCGG	3 cut(s)	506, 873, 988
MspR9I	CCNGG	4 cut(s)	480, 629, 874, 1266
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	3 cut(s)	480, 629, 1266
MvnI	CGCG	1 cut(s)	1330
NciI	CCSGG	1 cut(s)	874
NcoI	CCATGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	4 cut(s)	603, 724, 838, 1185
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	3 cut(s)	372, 670, 1055
NsiI	ATGCAT	1 cut(s)	457
PciSI	GCTCTTC	2 cut(s)	1086, 1116
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	1260
PfeI	GAWTC	4 cut(s)	275, 388, 410, 1256
PflMI	CCANNNNNTGG	1 cut(s)	931
PfoI	TCCNGGA	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	722
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	478, 627, 1264
PspFI	CCCAGC	2 cut(s)	203, 877
PspGI	CCWGG	3 cut(s)	478, 627, 1264
PspN4I	GGNNCC	4 cut(s)	603, 724, 838, 1185
PspPI	GGNCC	3 cut(s)	7, 722, 985
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	2 cut(s)	868, 1207
PstNI	CAGNNNCTG	3 cut(s)	263, 1175, 1211
PvuII	CAGCTG	2 cut(s)	941, 1202
RsaI	GTAC	2 cut(s)	951, 1092
RsaNI	GTAC	2 cut(s)	950, 1091
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	2 cut(s)	1086, 1116
SaqAI	TTAA	4 cut(s)	312, 575, 1022, 1248
Sau96I	GGNCC	3 cut(s)	7, 722, 985
ScrFI	CCNGG	4 cut(s)	480, 629, 874, 1266
SduI	GDGCHC	5 cut(s)	133, 289, 478, 833, 938
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	864, 1203
SinI	GGWCC	2 cut(s)	722, 985
SmlI	CTYRAG	2 cut(s)	109, 132
SmoI	CTYRAG	2 cut(s)	109, 132
SpeI	ACTAGT	1 cut(s)	946
Sse9I	AATT	5 cut(s)	71, 327, 434, 540, 1225
SsiI	CCGC	3 cut(s)	744, 800, 1328
SspMI	CTAG	3 cut(s)	120, 911, 947
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	4 cut(s)	478, 627, 872, 1264
StyI	CCWWGG	5 cut(s)	166, 213, 752, 853, 1029
TaaI	ACNGT	2 cut(s)	676, 954
TasI	AATT	5 cut(s)	71, 327, 434, 540, 1225
TatI	WGTACW	1 cut(s)	949
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	4 cut(s)	275, 388, 410, 1256
Tru1I	TTAA	4 cut(s)	312, 575, 1022, 1248
Tru9I	TTAA	4 cut(s)	312, 575, 1022, 1248
TscAI	CASTG	6 cut(s)	87, 255, 540, 679, 780, 1150
TseFI	GTSAC	3 cut(s)	372, 670, 1055
Tsp45I	GTSAC	3 cut(s)	372, 670, 1055
TspDTI	ATGAA	2 cut(s)	141, 613
TspGWI	ACGGA	1 cut(s)	1219
TspRI	CASTG	6 cut(s)	87, 255, 540, 679, 780, 1150
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	2 cut(s)	722, 985
XapI	RAATTY	2 cut(s)	71, 1225
XmnI	GAANNNNTTC	1 cut(s)	1260
XspI	CTAG	3 cut(s)	120, 911, 947
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.