AT4G01650

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008041
Physical Location & Seq
Reverse (-)
704377 .. 707045
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01650.3

Sequence Viewer

Length: 867 bp
ATGCAATCTTCTCCGATCTTATTAGACTTCTCTTCCGCCTTTCACCACCCACGCGCCGCCGCGTTAGCCACCACTTCCGGCCTAACGAATTCACACTCTCCGACTAAAAAATATCGCCTGATAACCTCTTTTTCGCCTTCCTCGACACTGCTAGCTTCTTCTCGTAGATGTTTCACCTGCCGATTTGGCGACAGTTCTCCGCGATTCAATTCGAACGAGGATGAAACTGAAACTGAAACTGATGATGAAGATGATTATTGTTTGACAGATGGGAAAACAGAGGAATTGGTAGTAGGAGACGATGGTGTTCTTATAGAGTTGAAGAAGCTCGAGAAGAGCTCGCGTCGAATTCGTTCGAAGATTGGAATGGAAGCGAGTCTCGATTCCGTTTGGAGCGTATTGACTGATTACGAGAAGCTATCTGATTTCATTCCAGGTCTTGTTGTTAGCGAATTGGTTGAGAAAGAAGGCAATCGTGTTCGTCTTTTCCAGATGGGACAGCAGAACTTAGCATTGGGACTTAAGTTCAATGCCAAAGCTGTTCTAGATTGTTACGAGAAAGAGCTTGAGGTTCTGCCACATGGGAGGAGACGTGAGATTGATTTTAAGATGGTTGAAGGAGATTTTCAGTTGTTTGAAGGCAAATGGTCCATCGAACAACTCGACAAAGGGATTCATGGGGAGGCTTTGGATTTACAGTTTAAAGATTTTCGGACGACGCTTGCATACACGGTGGATGTAAAACCGAAGATGTGGTTACCGGTGCGGCTAGTCGAAGGAAGATTGTGCAAAGAGATAAGAACTAATCTGATGAGTATCCGAGATGCAGCACAGAAAGTTATTGAAGGTGTTATTCATGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

288

Amino Acids

32.62

Weight (kDa)

5.42

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 123 - 221 2.6e-16 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AccII CGCG 4 cut(s) 54, 62, 202, 343
AciI CCGC 5 cut(s) 36, 57, 60, 200, 766
AcsI RAATTY 2 cut(s) 88, 348
AflII CTTAAG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 6 cut(s) 208, 322, 529, 617, 638, 845
AjiI CACGTC 1 cut(s) 593
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 6 cut(s) 155, 328, 339, 418, 539, 565
AluI AGCT 6 cut(s) 155, 328, 339, 418, 539, 565
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 3 cut(s) 291, 383, 583
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 88, 348
AsiGI ACCGGT 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 352
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 648
AsuHPI GGTGA 2 cut(s) 35, 166
AsuII TTCGAA 2 cut(s) 212, 356
AsuNHI GCTAGC 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 648
BanII GRGCYC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 839
BccI CCATC 5 cut(s) 263, 296, 487, 604, 659
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 1 cut(s) 827
BcoDI GTCTC 3 cut(s) 291, 383, 583
BfaI CTAG 3 cut(s) 152, 545, 770
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 185
BfuI GTATCC 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 4 cut(s) 57, 60, 767, 828
BlsI GCNGC 4 cut(s) 58, 61, 768, 829
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 648
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 814
BmtI GCTAGC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu14I TTCGAA 2 cut(s) 212, 356
BpuEI CTTGAG 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 815
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse118I RCCGGY 1 cut(s) 760
Bse8I GATNNNNATC 1 cut(s) 815
BseBI CCWGG 1 cut(s) 435
BseGI GGATG 2 cut(s) 226, 742
BseJI GATNNNNATC 1 cut(s) 815
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 839
Bsh1236I CGCG 4 cut(s) 54, 62, 202, 343
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 78, 761
BslFI GGGAC 2 cut(s) 510, 531
BsmAI GTCTC 3 cut(s) 291, 383, 583
BsmBI CGTCTC 2 cut(s) 291, 583
BsmFI GGGAC 2 cut(s) 510, 531
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 2 cut(s) 212, 356
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 15, 859
BspACI CCGC 5 cut(s) 36, 57, 60, 200, 766
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 4 cut(s) 54, 62, 202, 343
BspHI TCATGA 1 cut(s) 856
BspMI ACCTGC 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 2 cut(s) 212, 356
BspTI CTTAAG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 760
BssAI RCCGGY 1 cut(s) 760
BssMI GATC 2 cut(s) 15, 859
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 194, 699, 733
Bst6I CTCTTC 2 cut(s) 37, 329
BstAFI CTTAAG 1 cut(s) 521
BstBI TTCGAA 2 cut(s) 212, 356
BstC8I GCNNGC 3 cut(s) 153, 341, 723
BstDEI CTNAG 1 cut(s) 508
BstEII GGTNACC 1 cut(s) 756
BstF5I GGATG 2 cut(s) 226, 742
BstFNI CGCG 4 cut(s) 54, 62, 202, 343
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 18, 862
BstMAI GTCTC 3 cut(s) 291, 383, 583
BstMBI GATC 2 cut(s) 15, 859
BstMWI GCNNNNNNNGC 2 cut(s) 65, 186
BstNI CCWGG 1 cut(s) 435
BstPI GGTNACC 1 cut(s) 756
BstSCI CCNGG 1 cut(s) 433
BstUI CGCG 4 cut(s) 54, 62, 202, 343
BstV1I GCAGC 1 cut(s) 839
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 226, 742
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 153, 341, 723
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 1 cut(s) 648
CseI GACGC 2 cut(s) 332, 727
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 3 cut(s) 581, 677, 857
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 17, 861
DpnII GATC 2 cut(s) 15, 859
DraI TTTAAA 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 37, 329
EarI CTCTTC 2 cut(s) 37, 329
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 756
EcoICRI GAGCTC 1 cut(s) 339
EcoO65I GGTNACC 1 cut(s) 756
EcoRI GAATTC 2 cut(s) 88, 348
EcoRII CCWGG 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 341
Esp3I CGTCTC 2 cut(s) 291, 583
FaeI CATG 3 cut(s) 584, 680, 860
FaiI YATR 5 cut(s) 314, 582, 678, 727, 858
FaqI GGGAC 2 cut(s) 510, 531
FatI CATG 3 cut(s) 580, 676, 856
Fnu4HI GCNGC 4 cut(s) 57, 60, 767, 828
FokI GGATG 2 cut(s) 233, 749
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 57, 60, 767, 828
FspBI CTAG 3 cut(s) 152, 545, 770
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 57, 60, 767, 828
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 78, 761
HgaI GACGC 2 cut(s) 332, 727
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 584, 680, 860
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 4 cut(s) 204, 376, 383, 673
HpaII CCGG 2 cut(s) 78, 761
HphI GGTGA 2 cut(s) 35, 166
Hpy188I TCNGA 6 cut(s) 15, 102, 424, 714, 810, 821
Hpy188III TCNNGA 5 cut(s) 331, 380, 490, 545, 857
Hpy99I CGWCG 2 cut(s) 348, 721
HpyAV CCTTC 6 cut(s) 147, 461, 611, 632, 770, 839
HpyCH4III ACNGT 3 cut(s) 194, 699, 733
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 4 cut(s) 4, 725, 789, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 186
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 3 cut(s) 584, 680, 860
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 15, 859
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 7 cut(s) 91, 131, 190, 420, 447, 503, 774
Lsp1109I GCAGC 1 cut(s) 839
LweI GCATC 1 cut(s) 814
MaeI CTAG 3 cut(s) 152, 545, 770
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 2 cut(s) 551, 756
MalI GATC 2 cut(s) 17, 861
MboI GATC 2 cut(s) 15, 859
MboII GAAGA 8 cut(s) 24, 150, 260, 334, 346, 370, 760, 792
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 5 cut(s) 88, 208, 284, 348, 452
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 7 cut(s) 136, 151, 211, 274, 562, 579, 676
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 3 cut(s) 522, 606, 702
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 2 cut(s) 78, 761
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 4 cut(s) 54, 62, 202, 343
MwoI GCNNNNNNNGC 2 cut(s) 65, 186
NdeII GATC 2 cut(s) 15, 859
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 3 cut(s) 584, 680, 860
NspV TTCGAA 2 cut(s) 212, 356
PaeR7I CTCGAG 1 cut(s) 329
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 140, 660
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 3 cut(s) 204, 383, 673
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 4 cut(s) 58, 61, 768, 829
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 756
PspGI CCWGG 1 cut(s) 433
PspPI GGNCC 1 cut(s) 648
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 3 cut(s) 522, 606, 702
SatI GCNGC 4 cut(s) 57, 60, 767, 828
Sau3AI GATC 2 cut(s) 15, 859
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 1 cut(s) 814
Sfr274I CTCGAG 1 cut(s) 329
SfuI TTCGAA 2 cut(s) 212, 356
SinI GGWCC 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 3 cut(s) 329, 521, 566
SmoI CTYRAG 3 cut(s) 329, 521, 566
Sse9I AATT 5 cut(s) 88, 208, 284, 348, 452
SsiI CCGC 5 cut(s) 36, 57, 60, 200, 766
SspMI CTAG 3 cut(s) 152, 545, 770
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 194, 699, 733
TaiI ACGT 1 cut(s) 595
TaqI TCGA 9 cut(s) 143, 212, 330, 346, 356, 381, 654, 663, 774
TasI AATT 5 cut(s) 88, 208, 284, 348, 452
TauI GCSGC 3 cut(s) 59, 62, 769
TfiI GAWTC 3 cut(s) 204, 383, 673
Tru1I TTAA 3 cut(s) 522, 606, 702
Tru9I TTAA 3 cut(s) 522, 606, 702
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 827
TspDTI ATGAA 5 cut(s) 237, 261, 418, 665, 845
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 153
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 2 cut(s) 88, 348
XbaI TCTAGA 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 3 cut(s) 152, 545, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.