Rh3AG268400

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008041
Physical Location & Seq
Reverse (-)
30551550 .. 30553894
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG268400.1

Sequence Viewer

Length: 738 bp
ATGTCCTTGAAATCAATCTGCTTCTCTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCTCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTCCTTGTCTGAGGATGACGACGATTACGATTCCGATTCAGAAGCAGAGAAATCGGAAGTTGATATAGATGTAGATATAGAGTTAGAGATAGAGAAGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAACTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGCCTTTTTCAGATTGGGGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGCTAATGATTTGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTTGACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAGTGGTCTCTCCAACAGGTACACACACTTCATTTTCTAGTCTTGCTTTACTGTATCTTGATAGATTATCTCAAATCAATATGCTATGTACTTGGTAAAACTGGCTCCTTCTTGCCAATTGCAGCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

245

Amino Acids

27.22

Weight (kDa)

4.61

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 106 - 209 5.6e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 339
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 2 cut(s) 179, 482
AciI CCGC 3 cut(s) 57, 177, 326
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 3 cut(s) 55, 627, 696
AfiI CCNNNNNNNGG 3 cut(s) 291, 339, 415
AgsI TTSAA 6 cut(s) 10, 72, 138, 478, 581, 593
AhdI GACNNNNNGTC 2 cut(s) 178, 392
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 4 cut(s) 124, 358, 548, 618
AoxI GGCC 3 cut(s) 140, 282, 369
ApeKI GCWGC 3 cut(s) 59, 151, 728
ApoI RAATTY 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 137, 596
BanI GGYRCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 618, 650
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 4 cut(s) 124, 358, 548, 618
BfaI CTAG 3 cut(s) 39, 515, 644
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 60, 152, 326, 729
BlsI GCNGC 4 cut(s) 61, 153, 327, 730
Bme1390I CCNGG 1 cut(s) 384
BmeRI GACNNNNNGTC 2 cut(s) 178, 392
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 4 cut(s) 35, 283, 324, 712
BmrFI CCNGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 2 cut(s) 548, 618
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 339, 415
Bse1I ACTGG 3 cut(s) 372, 400, 712
Bse3DI GCAATG 1 cut(s) 522
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 291, 339, 415
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 3 cut(s) 372, 400, 712
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 2 cut(s) 179, 482
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 3 cut(s) 142, 284, 371
BshNI GGYRCC 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 129, 292, 384
BslI CCNNNNNNNGG 3 cut(s) 291, 339, 415
BsmAI GTCTC 4 cut(s) 124, 358, 548, 618
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 142, 284, 371
Bso31I GGTCTC 2 cut(s) 548, 618
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 3 cut(s) 57, 177, 326
BspANI GGCC 3 cut(s) 142, 284, 371
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 179, 482
BspLI GGNNCC 4 cut(s) 35, 283, 324, 712
BspMI ACCTGC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 2 cut(s) 548, 618
BsrBI CCGCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 3 cut(s) 372, 400, 712
BssMI GATC 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 337, 659
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 330, 430
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 179, 482
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 4 cut(s) 124, 358, 548, 618
BstMBI GATC 1 cut(s) 302
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 3 cut(s) 65, 148, 329
BstSCI CCNGG 1 cut(s) 382
BstUI CGCG 2 cut(s) 179, 482
BstV1I GCAGC 2 cut(s) 46, 138
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 142, 284, 371
BtsCI GGATG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 330, 430
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 282
CseI GACGC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 54, 626, 695
CviAII CATG 1 cut(s) 574
CviJI RGCY 8 cut(s) 34, 42, 142, 169, 284, 371, 469, 711
CviKI_1 RGCY 8 cut(s) 34, 42, 142, 169, 284, 371, 469, 711
CviQI GTAC 3 cut(s) 54, 626, 695
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 324
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DriI GACNNNNNGTC 2 cut(s) 178, 392
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 2 cut(s) 178, 392
EarI CTCTTC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 548, 618
Eco57I CTGAAG 1 cut(s) 572
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 577
FaiI YATR 6 cut(s) 245, 257, 575, 688, 693, 736
FatI CATG 1 cut(s) 573
Fnu4HI GCNGC 4 cut(s) 60, 152, 326, 729
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 60, 152, 326, 729
FspBI CTAG 3 cut(s) 39, 515, 644
GlaI GCGC 1 cut(s) 324
GluI GCNGC 4 cut(s) 60, 152, 326, 729
GsuI CTGGAG 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 3 cut(s) 142, 284, 371
HapII CCGG 3 cut(s) 129, 292, 384
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 6 cut(s) 173, 209, 215, 297, 387, 508
HpaII CCGG 3 cut(s) 129, 292, 384
HphI GGTGA 2 cut(s) 137, 596
Hpy166II GTNNAC 2 cut(s) 351, 628
Hpy188III TCNNGA 5 cut(s) 160, 340, 409, 515, 664
Hpy8I GTNNAC 2 cut(s) 351, 628
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 54, 575, 724
HpyCH4III ACNGT 2 cut(s) 337, 659
HpyCH4V TGCA 2 cut(s) 154, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 148, 329
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 1 cut(s) 323
KasI GGCGCC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 5 cut(s) 39, 67, 411, 448, 716
Lsp1109I GCAGC 2 cut(s) 46, 138
MaeI CTAG 3 cut(s) 39, 515, 644
MaeIII GTNAC 1 cut(s) 584
MalI GATC 1 cut(s) 304
MbiI CCGCTC 1 cut(s) 328
MboI GATC 1 cut(s) 302
MboII GAAGA 3 cut(s) 69, 126, 286
MfeI CAATTG 1 cut(s) 723
MluCI AATT 3 cut(s) 124, 473, 723
Mly113I GGCGCC 1 cut(s) 323
MlyI GAGTC 2 cut(s) 167, 381
MmeI TCCRAC 2 cut(s) 396, 643
MnlI CCTC 5 cut(s) 153, 184, 313, 522, 596
MroXI GAANNNNTTC 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 129, 292, 384
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 723
MvnI CGCG 2 cut(s) 179, 482
MwoI GCNNNNNNNGC 3 cut(s) 65, 148, 329
NarI GGCGCC 1 cut(s) 323
NciI CCSGG 1 cut(s) 384
NdeII GATC 1 cut(s) 302
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 4 cut(s) 35, 283, 324, 712
NmuCI GTSAC 1 cut(s) 584
PaqCI CACCTGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 4 cut(s) 209, 215, 297, 508
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 4 cut(s) 61, 153, 327, 730
Ple19I CGATCG 1 cut(s) 305
PleI GAGTC 2 cut(s) 167, 381
PluTI GGCGCC 1 cut(s) 326
PpsI GAGTC 2 cut(s) 167, 381
PspN4I GGNNCC 4 cut(s) 35, 283, 324, 712
PspPI GGNCC 1 cut(s) 282
PvuI CGATCG 1 cut(s) 305
RsaI GTAC 3 cut(s) 55, 627, 696
RsaNI GTAC 3 cut(s) 54, 626, 695
SatI GCNGC 4 cut(s) 60, 152, 326, 729
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 2 cut(s) 167, 381
ScrFI CCNGG 1 cut(s) 384
SetI ASST 4 cut(s) 150, 171, 586, 627
SfoI GGCGCC 1 cut(s) 324
Sse9I AATT 3 cut(s) 124, 473, 723
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 57, 177, 326
SspDI GGCGCC 1 cut(s) 322
SspMI CTAG 3 cut(s) 39, 515, 644
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 337, 659
TaqI TCGA 3 cut(s) 161, 171, 601
TasI AATT 3 cut(s) 124, 473, 723
TatI WGTACW 1 cut(s) 694
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 4 cut(s) 209, 215, 297, 508
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 3 cut(s) 59, 151, 728
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 2 cut(s) 367, 626
TspGWI ACGGA 2 cut(s) 106, 368
Van91I CCANNNNNTGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 473
XbaI TCTAGA 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 3 cut(s) 39, 515, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.