FvH4_3g32461

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008041
Physical Location & Seq
Forward (+)
27752910 .. 27753411
502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32461.t1

Sequence Viewer

Length: 273 bp
ATGGCCGCCCACTCCAGGATTATCAATATCTTTGTCCTCTTCTCCAGCAGAAAAGTGGATTGCAATGAGAATCCTCTAGAGAGGATTGAGAACGGTATAGGGGGAGTGAGTCTGAAACGTGAGATTGAGTTTAACATGGTTGAAGGTGACTTGGATTTGGCGAGGTCGACTCGTAGGTGGCAGCAATGGCACTTTGTCAGGTTCGGCAAGTCTCTCGTCTTCTTCGTCATCGAAAAATCTGAAGAGCCCCTTAATGTTAATTTCCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

91

Amino Acids

10.58

Weight (kDa)

6.83

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 216
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 6, 182
BlsI GCNGC 2 cut(s) 7, 183
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 70, 191
BseBI CCWGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 2 cut(s) 70, 191
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 249
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 237
BsrDI GCAATG 2 cut(s) 70, 191
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 2 cut(s) 44, 237
BstMAI GTCTC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 5, 247
CviKI_1 RGCY 2 cut(s) 5, 247
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 44, 237
EarI CTCTTC 2 cut(s) 44, 237
Eco24I GRGCYC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 98, 137
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 6, 182
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 6, 182
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 6, 182
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 70, 109, 169
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 114, 241
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 3 cut(s) 28, 58, 184
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 4 cut(s) 31, 211, 214, 254
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 259
MlyI GAGTC 2 cut(s) 118, 163
MnlI CCTC 4 cut(s) 47, 75, 84, 156
MseI TTAA 3 cut(s) 132, 252, 258
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 2 cut(s) 7, 183
PleI GAGTC 2 cut(s) 117, 163
PpsI GAGTC 2 cut(s) 117, 163
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
SalI GTCGAC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 132, 252, 258
SatI GCNGC 2 cut(s) 6, 182
SchI GAGTC 2 cut(s) 118, 163
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 121, 148, 167, 179, 203
Sse9I AATT 1 cut(s) 259
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 167, 231
TasI AATT 1 cut(s) 259
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 3 cut(s) 132, 252, 258
Tru9I TTAA 3 cut(s) 132, 252, 258
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.