Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8153526.1

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 358

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8153526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

cttaacactagtggggaaatggcatgtgatcctttgatagaccagaaaatgcaaacaacaactactctttcctacttggttgatgtaaagccgaagatgttgttgccggttcagctggttgagggtagactctgcaaggagatcaaaataaacctagcttgcatccgggaagaagcactgaaaatgactcgcgaaactcttcttactcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

70

Amino Acids

7.95

Weight (kDa)

7.91

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	1 cut(s)	192
AclWI	GGATC	1 cut(s)	23
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	2 cut(s)	115, 158
AluI	AGCT	2 cut(s)	115, 158
AlwI	GGATC	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 155
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	106
BseGI	GGATG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	107, 166
Bsp143I	GATC	2 cut(s)	28, 141
Bsp68I	TCGCGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssMI	GATC	2 cut(s)	28, 141
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	31, 144
BstMBI	GATC	2 cut(s)	28, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	176
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	106
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	3 cut(s)	91, 115, 158
CviKI_1	RGCY	3 cut(s)	91, 115, 158
DpnI	GATC	2 cut(s)	30, 143
DpnII	GATC	2 cut(s)	28, 141
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
FaeI	CATG	1 cut(s)	27
FaiI	YATR	1 cut(s)	25
FatI	CATG	1 cut(s)	23
FblI	GTMKAC	1 cut(s)	127
FokI	GGATG	1 cut(s)	149
FspBI	CTAG	2 cut(s)	9, 155
HapII	CCGG	2 cut(s)	107, 166
Hin1II	CATG	1 cut(s)	27
HinfI	GANTC	2 cut(s)	129, 187
HpaII	CCGG	2 cut(s)	107, 166
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	52, 135, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	28, 141
LpnPI	CCDG	4 cut(s)	56, 101, 120, 179
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	9, 155
MalI	GATC	2 cut(s)	30, 143
MboI	GATC	2 cut(s)	28, 141
MboII	GAAGA	3 cut(s)	106, 182, 191
MlyI	GAGTC	2 cut(s)	123, 181
MnlI	CCTC	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	3
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	107, 166
MspR9I	CCNGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	28, 141
NlaIII	CATG	1 cut(s)	27
NruI	TCGCGA	1 cut(s)	192
NspI	RCATGY	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	198
PfoI	TCCNGGA	1 cut(s)	165
PleI	GAGTC	2 cut(s)	123, 181
PpsI	GAGTC	2 cut(s)	123, 181
PvuII	CAGCTG	1 cut(s)	115
RruI	TCGCGA	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	3
Sau3AI	GATC	2 cut(s)	28, 141
SchI	GAGTC	2 cut(s)	123, 181
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	3 cut(s)	117, 156, 160
SfaNI	GCATC	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	8
SspMI	CTAG	2 cut(s)	9, 155
StyD4I	CCNGG	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	3
Tru9I	TTAA	1 cut(s)	3
TscAI	CASTG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	183
XceI	RCATGY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	9, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.