Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Forward (+)

20815996 .. 20817153

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAAATGCAAGCTCCAAGTCCTAGTAGTTACACAACTCTGCTCCATATCCCTTGTCCCACTGCTGCAAATGCAACTGCAACAACTCCAAAAGCATTGCTGCTGGTACCACAAAAAAGCCCTAACCTTGCAGCGACAGCGAGTGATTTTTCTTTTTCTATTTTTAGAAATCCAAACCTTTTCACCGCCGTCTCTCAATTCAGTAGCAGTCCTCATGTGCAGGTGCAGTGCTCATCTTCAAACAAGGTCGATTCGTCCATCTTGTCCCAGGATGATGGTGATGACGATGCTACAGAATCGGTAGCCATAGGCGAAGATATTGATCTTGATATAGATATAGAAATAGAGATAGAGAAGACGGGAAACAACTGTCGGAGGATCCGGTTGGAAATTGGGATAGAAGCCCCACTCAACACGGTCTGGAATCTATTGACTGATTACGAGAGATTGGCCGACTTCATTCCGGGACTCGCCGTCTGCCGAGTGCTCGATAAGACGGACGGCTATGCTCGGCTTTTGCAGATTGGGGAGCAGAAGTTGGCGTTGGGGCTGAAATTCAATGCTAAAGGGATCGTAGATTGTTACGAGACTCCACTTGAGACCCTTCCTAATAATTTCGGTTACAAGCGTGATATCCGATTTAACATGGTTGAAGGCGACTTCGAAATCTTTCAAGGAAAATGGTCTCTCCAACAGCAACACCCACACCCGCAGCAGCAGCAGCAAGTGCAAGTGCACACAAGTCTCTCCTACATGGTTGATGTAAAGCCAAAGATGTGGCTGCCCGTTCGCCTTGTTGAGGGTAGACTTTGTAAGGAGATCAAATTAAACCTAGCATGCATCCGACAAGAAGCACTCAAACTAACTCACCACAACACTACTGCTCCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

298

Amino Acids

33.15

Weight (kDa)

5.53

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	805
AciI	CCGC	2 cut(s)	186, 710
AclWI	GGATC	3 cut(s)	373, 386, 578
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	554
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	799
AgsI	TTSAA	4 cut(s)	240, 559, 653, 674
AhdI	GACNNNNNGTC	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	3 cut(s)	233, 489, 738
Alw26I	GTCTC	5 cut(s)	196, 581, 593, 690, 749
Alw44I	GTGCAC	1 cut(s)	734
AlwI	GGATC	3 cut(s)	373, 386, 578
AoxI	GGCC	1 cut(s)	450
ApaLI	GTGCAC	1 cut(s)	734
ApeKI	GCWGC	8 cut(s)	65, 100, 131, 712, 715, 718, 721, 781
ApoI	RAATTY	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	669
Asp718I	GGTACC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	175, 290, 860
AsuII	TTCGAA	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	3 cut(s)	233, 489, 738
BbvI	GCAGC	8 cut(s)	52, 87, 143, 724, 727, 730, 733, 768
BccI	CCATC	2 cut(s)	266, 269
BceAI	ACGGC	3 cut(s)	173, 458, 517
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	5 cut(s)	196, 581, 593, 690, 749
BfaI	CTAG	2 cut(s)	24, 833
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	8 cut(s)	66, 101, 132, 713, 716, 719, 722, 782
BlsI	GCNGC	8 cut(s)	67, 102, 133, 714, 717, 720, 723, 783
Bme1390I	CCNGG	2 cut(s)	269, 465
BmeRI	GACNNNNNGTC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	108, 380
BmrFI	CCNGG	2 cut(s)	269, 465
BmsI	GCATC	2 cut(s)	277, 849
BpiI	GAAGAC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	321
BsaI	GGTCTC	2 cut(s)	593, 690
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	3 cut(s)	521, 551, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	277, 840
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMI	GCAATG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	876
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	8 cut(s)	52, 87, 143, 724, 727, 730, 733, 768
BsgI	GTGCAG	2 cut(s)	239, 245
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	233, 489, 738
BsiSI	CCGG	2 cut(s)	382, 464
BslFI	GGGAC	3 cut(s)	42, 250, 480
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	5 cut(s)	196, 581, 593, 690, 749
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	3 cut(s)	42, 250, 480
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	2 cut(s)	593, 690
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	3 cut(s)	233, 489, 738
Bsp143I	GATC	4 cut(s)	322, 378, 570, 819
BspACI	CCGC	2 cut(s)	186, 710
BspANI	GGCC	1 cut(s)	452
BspLI	GGNNCC	2 cut(s)	108, 380
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	3 cut(s)	373, 386, 578
BspT104I	TTCGAA	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	2 cut(s)	593, 690
BsrDI	GCAATG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	322, 378, 570, 819
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	371, 418
BstAPI	GCANNNNNTGC	1 cut(s)	727
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	12, 838
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	277, 840
BstKTI	GATC	4 cut(s)	325, 381, 573, 822
BstMAI	GTCTC	5 cut(s)	196, 581, 593, 690, 749
BstMBI	GATC	4 cut(s)	322, 378, 570, 819
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 137, 718, 721, 727
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	840
BstSCI	CCNGG	2 cut(s)	267, 463
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	8 cut(s)	52, 87, 143, 724, 727, 730, 733, 768
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	2 cut(s)	275, 777
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	277, 840
BtsI	GCAGTG	2 cut(s)	60, 233
BtsIMutI	CAGTG	2 cut(s)	60, 233
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	12, 838
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	4 cut(s)	215, 646, 754, 837
CviQI	GTAC	1 cut(s)	107
DpnI	GATC	4 cut(s)	324, 380, 572, 821
DpnII	GATC	4 cut(s)	322, 378, 570, 819
DriI	GACNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	450
Eam1105I	GACNNNNNGTC	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	593, 690
Eco32I	GATATC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	842
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	4 cut(s)	218, 649, 757, 840
FaiI	YATR	9 cut(s)	48, 216, 308, 332, 338, 507, 647, 755, 838
FaqI	GGGAC	3 cut(s)	42, 250, 480
FatI	CATG	4 cut(s)	214, 645, 753, 836
FauI	CCCGC	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	805
Fnu4HI	GCNGC	8 cut(s)	66, 101, 132, 713, 716, 719, 722, 782
FokI	GGATG	2 cut(s)	284, 827
Fsp4HI	GCNGC	8 cut(s)	66, 101, 132, 713, 716, 719, 722, 782
FspBI	CTAG	2 cut(s)	24, 833
GluI	GCNGC	8 cut(s)	66, 101, 132, 713, 716, 719, 722, 782
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	382, 464
Hin1II	CATG	4 cut(s)	218, 649, 757, 840
HinfI	GANTC	5 cut(s)	251, 296, 424, 468, 589
HpaII	CCGG	2 cut(s)	382, 464
HphI	GGTGA	3 cut(s)	175, 290, 860
Hpy166II	GTNNAC	2 cut(s)	736, 806
Hpy188I	TCNGA	3 cut(s)	375, 638, 845
Hpy188III	TCNNGA	2 cut(s)	326, 421
Hpy8I	GTNNAC	2 cut(s)	736, 806
HpyAV	CCTTC	2 cut(s)	614, 647
HpyCH4III	ACNGT	2 cut(s)	371, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 137, 718, 721, 727
Hsp92II	CATG	4 cut(s)	218, 649, 757, 840
KpnI	GGTACC	1 cut(s)	110
Kzo9I	GATC	4 cut(s)	322, 378, 570, 819
LmnI	GCTCC	4 cut(s)	19, 48, 529, 889
LpnPI	CCDG	7 cut(s)	89, 206, 254, 281, 395, 406, 477
Lsp1109I	GCAGC	8 cut(s)	52, 87, 143, 724, 727, 730, 733, 768
LweI	GCATC	2 cut(s)	277, 849
MaeI	CTAG	2 cut(s)	24, 833
MaeIII	GTNAC	3 cut(s)	29, 581, 620
MalI	GATC	4 cut(s)	324, 380, 572, 821
MboI	GATC	4 cut(s)	322, 378, 570, 819
MboII	GAAGA	3 cut(s)	228, 326, 367
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	233, 489, 738
MluCI	AATT	5 cut(s)	197, 390, 554, 613, 824
MlyI	GAGTC	2 cut(s)	462, 583
MmeI	TCCRAC	4 cut(s)	353, 366, 715, 868
MnlI	CCTC	3 cut(s)	222, 369, 793
Mph1103I	ATGCAT	1 cut(s)	842
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	2 cut(s)	642, 827
MspI	CCGG	2 cut(s)	382, 464
MspR9I	CCNGG	2 cut(s)	269, 465
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	71, 137, 718, 721, 727
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	322, 378, 570, 819
NlaIII	CATG	4 cut(s)	218, 649, 757, 840
NlaIV	GGNNCC	2 cut(s)	108, 380
NmeAIII	GCCGAG	2 cut(s)	490, 506
NsiI	ATGCAT	1 cut(s)	842
NspI	RCATGY	1 cut(s)	840
NspV	TTCGAA	1 cut(s)	663
PaeI	GCATGC	1 cut(s)	840
PaqCI	CACCTGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	251, 296, 424
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	8 cut(s)	67, 102, 133, 714, 717, 720, 723, 783
PleI	GAGTC	2 cut(s)	462, 583
PpsI	GAGTC	2 cut(s)	462, 583
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	108, 380
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	642, 827
SatI	GCNGC	8 cut(s)	66, 101, 132, 713, 716, 719, 722, 782
Sau3AI	GATC	4 cut(s)	322, 378, 570, 819
SchI	GAGTC	2 cut(s)	462, 583
ScrFI	CCNGG	2 cut(s)	269, 465
SduI	GDGCHC	3 cut(s)	233, 489, 738
SetI	ASST	6 cut(s)	16, 129, 180, 225, 249, 834
SfaNI	GCATC	2 cut(s)	277, 849
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	840
Sse9I	AATT	5 cut(s)	197, 390, 554, 613, 824
SsiI	CCGC	2 cut(s)	186, 710
SspMI	CTAG	2 cut(s)	24, 833
StyD4I	CCNGG	2 cut(s)	267, 463
TaaI	ACNGT	2 cut(s)	371, 418
TaqI	TCGA	3 cut(s)	249, 489, 663
TasI	AATT	5 cut(s)	197, 390, 554, 613, 824
TfiI	GAWTC	3 cut(s)	251, 296, 424
Tru1I	TTAA	2 cut(s)	642, 827
Tru9I	TTAA	2 cut(s)	642, 827
TscAI	CASTG	2 cut(s)	67, 233
TseI	GCWGC	8 cut(s)	65, 100, 131, 712, 715, 718, 721, 781
TspDTI	ATGAA	2 cut(s)	17, 448
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	67, 233
VneI	GTGCAC	1 cut(s)	734
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	2 cut(s)	24, 833
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.