Rroxscaffold_6G00396950

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008041
Physical Location & Seq
Forward (+)
18518452 .. 18520526
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396950.1

Sequence Viewer

Length: 546 bp
ATGTCCTTGAAATCAATCTGCTTCTCTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCTCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTTCTTGTCTGAGGATGACGACGATTCCAATTCAGAAGCAGAGAAGTCGGAAGCTGATATAGATGTAGATATAGAGTTAGAGATAGAGACGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAATTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGGCTTTTTCAGATTGGAGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGAAAATGATTCGGGGGTCTCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

181

Amino Acids

19.81

Weight (kDa)

4.4

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 104 - 159 9.9e-08 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 316
AccB7I CCANNNNNTGG 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 2 cut(s) 179, 476
AciI CCGC 3 cut(s) 57, 177, 320
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 337, 467
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 285, 333, 409
AgsI TTSAA 5 cut(s) 10, 72, 138, 472, 521
AhdI GACNNNNNGTC 1 cut(s) 386
AluBI AGCT 2 cut(s) 169, 233
AluI AGCT 2 cut(s) 169, 233
Alw26I GTCTC 4 cut(s) 124, 260, 352, 541
AoxI GGCC 3 cut(s) 140, 276, 363
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 2 cut(s) 337, 467
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 4 cut(s) 124, 260, 352, 541
BfaI CTAG 2 cut(s) 39, 509
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 60, 152, 320
BlsI GCNGC 3 cut(s) 61, 153, 321
Bme1390I CCNGG 1 cut(s) 378
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 3 cut(s) 35, 277, 318
BmrFI CCNGG 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 333, 409
Bse1I ACTGG 2 cut(s) 366, 394
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 285, 333, 409
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 366, 394
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 2 cut(s) 179, 476
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 3 cut(s) 142, 278, 365
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 129, 286, 378
BslI CCNNNNNNNGG 3 cut(s) 285, 333, 409
BsmAI GTCTC 4 cut(s) 124, 260, 352, 541
BsmBI CGTCTC 2 cut(s) 124, 260
BsnI GGCC 3 cut(s) 142, 278, 365
Bso31I GGTCTC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 3 cut(s) 57, 177, 320
BspANI GGCC 3 cut(s) 142, 278, 365
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 179, 476
BspLI GGNNCC 3 cut(s) 35, 277, 318
BspMI ACCTGC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 322
BsrI ACTGG 2 cut(s) 366, 394
BssMI GATC 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 179, 476
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 4 cut(s) 124, 260, 352, 541
BstMBI GATC 1 cut(s) 296
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 3 cut(s) 65, 148, 323
BstSCI CCNGG 1 cut(s) 376
BstUI CGCG 2 cut(s) 179, 476
BstV1I GCAGC 2 cut(s) 46, 138
BsuRI GGCC 3 cut(s) 142, 278, 365
BtsCI GGATG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 54
CviJI RGCY 9 cut(s) 34, 42, 142, 169, 233, 278, 365, 427, 463
CviKI_1 RGCY 9 cut(s) 34, 42, 142, 169, 233, 278, 365, 427, 463
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 318
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 541
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
Esp3I CGTCTC 2 cut(s) 124, 260
FaiI YATR 2 cut(s) 239, 251
Fnu4HI GCNGC 3 cut(s) 60, 152, 320
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 60, 152, 320
FspBI CTAG 2 cut(s) 39, 509
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 60, 152, 320
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 3 cut(s) 142, 278, 365
HapII CCGG 3 cut(s) 129, 286, 378
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 317
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 6 cut(s) 173, 203, 291, 381, 502, 527
HpaII CCGG 3 cut(s) 129, 286, 378
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 4 cut(s) 160, 334, 403, 509
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 2 cut(s) 203, 274
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 148, 323
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 317
HspAI GCGC 1 cut(s) 317
KasI GGCGCC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 39, 67, 405
Lsp1109I GCAGC 2 cut(s) 46, 138
MaeI CTAG 2 cut(s) 39, 509
MalI GATC 1 cut(s) 298
MbiI CCGCTC 1 cut(s) 322
MboI GATC 1 cut(s) 296
MboII GAAGA 2 cut(s) 69, 126
MluCI AATT 4 cut(s) 124, 208, 337, 467
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 2 cut(s) 167, 375
MmeI TCCRAC 2 cut(s) 207, 390
MnlI CCTC 4 cut(s) 153, 184, 307, 516
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 129, 286, 378
MspR9I CCNGG 1 cut(s) 378
MvnI CGCG 2 cut(s) 179, 476
MwoI GCNNNNNNNGC 3 cut(s) 65, 148, 323
NarI GGCGCC 1 cut(s) 317
NciI CCSGG 1 cut(s) 378
NdeII GATC 1 cut(s) 296
NlaIV GGNNCC 3 cut(s) 35, 277, 318
NmeAIII GCCGAG 1 cut(s) 403
PaqCI CACCTGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 142
PfeI GAWTC 4 cut(s) 203, 291, 502, 527
PflMI CCANNNNNTGG 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 61, 153, 321
Ple19I CGATCG 1 cut(s) 299
PleI GAGTC 2 cut(s) 167, 375
PluTI GGCGCC 1 cut(s) 320
PpsI GAGTC 2 cut(s) 167, 375
PspN4I GGNNCC 3 cut(s) 35, 277, 318
PspPI GGNCC 1 cut(s) 276
PvuI CGATCG 1 cut(s) 299
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SatI GCNGC 3 cut(s) 60, 152, 320
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 2 cut(s) 167, 375
ScrFI CCNGG 1 cut(s) 378
SetI ASST 3 cut(s) 150, 171, 235
SfoI GGCGCC 1 cut(s) 318
Sse9I AATT 4 cut(s) 124, 208, 337, 467
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 57, 177, 320
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 2 cut(s) 39, 509
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 161, 171
TasI AATT 4 cut(s) 124, 208, 337, 467
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 4 cut(s) 203, 291, 502, 527
TseI GCWGC 2 cut(s) 59, 151
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 2 cut(s) 106, 362
Van91I CCANNNNNTGG 1 cut(s) 333
XapI RAATTY 2 cut(s) 337, 467
XbaI TCTAGA 1 cut(s) 508
XspI CTAG 2 cut(s) 39, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.