Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004711.1

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Forward (+)

76571 .. 78003

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004711.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtccttgaaatcaatctgcttctctctttggctccctagcccttctccgagtaccgctgctcctgcttcaatctcttccccctattcctttcctcggagaaatccaaaccactccgtctccaattccggttcttcaaggccgcacctgctgcatttctcgaccaagctcgactccgcgttcttgtctgaggatgacgattacgatgacgattccgattcagaagcagagaaatcggaagttgatatagatgtagatatagagttagagatagagaagacgggggccaactgccggagaatccgatcggaaatccgaatagaggcgccactcgccaccgtctggaacttgttgacggattacgagagactggccgacttcattcccggactcgccgtctgccagttgctccagaagtcggagaactacgctcggctttttcagattggggagcaggacttggcgtttgggctgaaattcaacgcgaaaggagtggtggattgttttgagaatcctctagagagcattgctaatgatttggggggtctcactctgaagcgtgatattgagtttaacatggtcgaaggtgactttgaaatctttcgaggaaagtggtctctccaacagcttaacactagtggggaaatggcatgtgatcctttgatagaccagaaaatgcaaacaacaaccagtctttcctacttggttgatgtaaagccgaagatgttgttgccggttcagctggttgagggtagactctgcaaggagatcaaaataaacctagcttgcatccgggaagaagcactgaaaatgactcgcgaaactcttcttactcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

279

Amino Acids

31.33

Weight (kDa)

4.75

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	754
AccII	CGCG	3 cut(s)	179, 485, 819
AciI	CCGC	3 cut(s)	57, 143, 177
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	5 cut(s)	96, 294, 322, 342, 418
AgsI	TTSAA	5 cut(s)	10, 72, 138, 481, 596
AhdI	GACNNNNNGTC	1 cut(s)	395
AhlI	ACTAGT	1 cut(s)	635
AluBI	AGCT	4 cut(s)	169, 628, 742, 785
AluI	AGCT	4 cut(s)	169, 628, 742, 785
Alw26I	GTCTC	4 cut(s)	124, 361, 551, 621
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	3 cut(s)	140, 285, 372
ApeKI	GCWGC	2 cut(s)	59, 151
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
Asp700I	GAANNNNTTC	2 cut(s)	600, 825
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	2 cut(s)	387, 794
AsuHPI	GGTGA	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	46, 138
BceAI	ACGGC	1 cut(s)	380
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	2 cut(s)	387, 794
BcoDI	GTCTC	4 cut(s)	124, 361, 551, 621
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	4 cut(s)	39, 518, 636, 782
BfoI	RGCGCY	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	3 cut(s)	60, 143, 152
BlsI	GCNGC	3 cut(s)	61, 144, 153
Bme1390I	CCNGG	2 cut(s)	387, 794
BmeRI	GACNNNNNGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	3 cut(s)	35, 286, 327
BmrFI	CCNGG	2 cut(s)	387, 794
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	387, 794
BsaHI	GRCGYC	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	551, 621
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 104, 134
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 294, 322, 342, 418
Bse118I	RCCGGY	1 cut(s)	733
Bse1I	ACTGG	3 cut(s)	375, 403, 690
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	199, 789
BseLI	CCNNNNNNNGG	5 cut(s)	96, 294, 322, 342, 418
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	375, 403, 690
BseXI	GCAGC	2 cut(s)	46, 138
Bsh1236I	CGCG	3 cut(s)	179, 485, 819
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	142, 287, 374
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	308
BsiSI	CCGG	5 cut(s)	129, 295, 387, 734, 793
BslI	CCNNNNNNNGG	5 cut(s)	96, 294, 322, 342, 418
BsmAI	GTCTC	4 cut(s)	124, 361, 551, 621
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	142, 287, 374
Bso31I	GGTCTC	2 cut(s)	551, 621
Bsp143I	GATC	3 cut(s)	305, 655, 768
Bsp68I	TCGCGA	1 cut(s)	819
BspACI	CCGC	3 cut(s)	57, 143, 177
BspANI	GGCC	3 cut(s)	142, 287, 374
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	179, 485, 819
BspLI	GGNNCC	3 cut(s)	35, 286, 327
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	2 cut(s)	551, 621
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	733
BsrI	ACTGG	3 cut(s)	375, 403, 690
BssAI	RCCGGY	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	305, 655, 768
BssNI	GRCGYC	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	82, 831
BstACI	GRCGYC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	199, 789
BstFNI	CGCG	3 cut(s)	179, 485, 819
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	308, 658, 771
BstMAI	GTCTC	4 cut(s)	124, 361, 551, 621
BstMBI	GATC	3 cut(s)	305, 655, 768
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 332, 739
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	385, 792
BstUI	CGCG	3 cut(s)	179, 485, 819
BstV1I	GCAGC	2 cut(s)	46, 138
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	142, 287, 374
BtsCI	GGATG	2 cut(s)	199, 789
BtsIMutI	CAGTG	1 cut(s)	803
BtuMI	TCGCGA	1 cut(s)	819
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	787
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	577, 651
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	3 cut(s)	307, 657, 770
DpnII	GATC	3 cut(s)	305, 655, 768
DriI	GACNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	82, 831
Eam1105I	GACNNNNNGTC	1 cut(s)	395
EarI	CTCTTC	2 cut(s)	82, 831
Eco31I	GGTCTC	2 cut(s)	551, 621
Eco57I	CTGAAG	1 cut(s)	575
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	580, 654
FaiI	YATR	4 cut(s)	248, 260, 578, 652
FatI	CATG	2 cut(s)	576, 650
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	3 cut(s)	60, 143, 152
FokI	GGATG	2 cut(s)	206, 776
Fsp4HI	GCNGC	3 cut(s)	60, 143, 152
FspBI	CTAG	4 cut(s)	39, 518, 636, 782
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	60, 143, 152
GsuI	CTGGAG	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	142, 287, 374
HapII	CCGG	5 cut(s)	129, 295, 387, 734, 793
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	580, 654
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	8 cut(s)	173, 212, 218, 300, 390, 511, 756, 814
HpaII	CCGG	5 cut(s)	129, 295, 387, 734, 793
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	354, 755
Hpy188III	TCNNGA	5 cut(s)	160, 343, 412, 518, 818
Hpy8I	GTNNAC	2 cut(s)	354, 755
HpyAV	CCTTC	2 cut(s)	54, 578
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	154, 679, 762, 789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 332, 739
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	580, 654
HspAI	GCGC	1 cut(s)	326
KasI	GGCGCC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	305, 655, 768
LmnI	GCTCC	4 cut(s)	39, 67, 414, 451
Lsp1109I	GCAGC	2 cut(s)	46, 138
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	4 cut(s)	39, 518, 636, 782
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	3 cut(s)	307, 657, 770
MboI	GATC	3 cut(s)	305, 655, 768
MboII	GAAGA	6 cut(s)	69, 126, 289, 733, 809, 818
MluCI	AATT	2 cut(s)	124, 476
Mly113I	GGCGCC	1 cut(s)	326
MlyI	GAGTC	4 cut(s)	167, 384, 750, 808
MmeI	TCCRAC	2 cut(s)	399, 646
MnlI	CCTC	6 cut(s)	105, 184, 316, 525, 599, 742
MroXI	GAANNNNTTC	2 cut(s)	600, 825
MseI	TTAA	2 cut(s)	573, 630
MspA1I	CMGCKG	2 cut(s)	59, 742
MspI	CCGG	5 cut(s)	129, 295, 387, 734, 793
MspR9I	CCNGG	2 cut(s)	387, 794
MvnI	CGCG	3 cut(s)	179, 485, 819
MwoI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 332, 739
NarI	GGCGCC	1 cut(s)	326
NciI	CCSGG	2 cut(s)	387, 794
NdeII	GATC	3 cut(s)	305, 655, 768
NlaIII	CATG	2 cut(s)	580, 654
NlaIV	GGNNCC	3 cut(s)	35, 286, 327
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	587
NruI	TCGCGA	1 cut(s)	819
NspI	RCATGY	1 cut(s)	654
PaqCI	CACCTGC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	600, 825
PfeI	GAWTC	4 cut(s)	212, 218, 300, 511
PflMI	CCANNNNNTGG	1 cut(s)	342
PfoI	TCCNGGA	2 cut(s)	385, 792
PkrI	GCNGC	3 cut(s)	61, 144, 153
Ple19I	CGATCG	1 cut(s)	308
PleI	GAGTC	4 cut(s)	167, 384, 750, 808
PluTI	GGCGCC	1 cut(s)	329
PpsI	GAGTC	4 cut(s)	167, 384, 750, 808
PspN4I	GGNNCC	3 cut(s)	35, 286, 327
PspPI	GGNCC	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	742
RruI	TCGCGA	1 cut(s)	819
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	573, 630
SatI	GCNGC	3 cut(s)	60, 143, 152
Sau3AI	GATC	3 cut(s)	305, 655, 768
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	4 cut(s)	167, 384, 750, 808
ScrFI	CCNGG	2 cut(s)	387, 794
SetI	ASST	7 cut(s)	150, 171, 589, 630, 744, 783, 787
SfaNI	GCATC	1 cut(s)	798
SfoI	GGCGCC	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	2 cut(s)	124, 476
SsiI	CCGC	3 cut(s)	57, 143, 177
SspDI	GGCGCC	1 cut(s)	325
SspMI	CTAG	4 cut(s)	39, 518, 636, 782
StyD4I	CCNGG	2 cut(s)	385, 792
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	4 cut(s)	161, 171, 582, 604
TasI	AATT	2 cut(s)	124, 476
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	212, 218, 300, 511
Tru1I	TTAA	2 cut(s)	573, 630
Tru9I	TTAA	2 cut(s)	573, 630
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	59, 151
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	2 cut(s)	106, 371
TspRI	CASTG	1 cut(s)	810
Van91I	CCANNNNNTGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	754
XmnI	GAANNNNTTC	2 cut(s)	600, 825
XspI	CTAG	4 cut(s)	39, 518, 636, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.