Rroxscaffold_6G00396660

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008041
Physical Location & Seq
Forward (+)
18155237 .. 18156970
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396660.1

Sequence Viewer

Length: 831 bp
ATGTCCTTGAAATCAATCTGCTTCTGTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCTCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTTCTTGTCTGAGGATGACGACGATTCCAATTCAGAAGCAGAGAAGTCGGAAGCTGATATAGATGTAGATATAGAGTTAGAGATAGAGACGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAATTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGGCTTTTTCAGATTGGAGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGAAAATGATTCGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTTAACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAGTGGTCTCTCCAACAGCTCAACACTAGTGGGGAACTAGCATGTGATCCTTTGGTAGACCAGAAAATGCAAACAAAAACTACTCTTTCCTACTTGGTTGATGTAAAGCCGAAGATGTTGTTGCCGGTTCAGTTGGTTGAGGGTAGACTGTGCAAGGAGATCAAAATAAACCTAGCATGTATCCGAGAAGAAGCACTGAAAATGACTCGCGAAACTCTTCTTACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

276

Amino Acids

30.74

Weight (kDa)

4.69

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 104 - 252 2.3e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 316
AccB7I CCANNNNNTGG 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 2 cut(s) 657, 745
AccII CGCG 3 cut(s) 179, 476, 810
AciI CCGC 3 cut(s) 57, 177, 320
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 337, 467
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 285, 333, 409
AgsI TTSAA 7 cut(s) 10, 72, 138, 472, 521, 575, 587
AhdI GACNNNNNGTC 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 626
AluBI AGCT 3 cut(s) 169, 233, 619
AluI AGCT 3 cut(s) 169, 233, 619
Alw26I GTCTC 5 cut(s) 124, 260, 352, 542, 612
AlwI GGATC 1 cut(s) 641
AoxI GGCC 3 cut(s) 140, 276, 363
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 2 cut(s) 337, 467
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
Asp700I GAANNNNTTC 2 cut(s) 591, 816
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 137, 590
BanI GGYRCC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciVI GTATCC 1 cut(s) 791
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 5 cut(s) 124, 260, 352, 542, 612
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 5 cut(s) 39, 509, 627, 638, 773
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 156
BfuI GTATCC 1 cut(s) 791
BisI GCNGC 3 cut(s) 60, 152, 320
BlsI GCNGC 3 cut(s) 61, 153, 321
Bme1390I CCNGG 1 cut(s) 378
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 3 cut(s) 35, 277, 318
BmrFI CCNGG 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 2 cut(s) 542, 612
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 333, 409
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 2 cut(s) 366, 394
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 285, 333, 409
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 366, 394
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 3 cut(s) 179, 476, 810
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 3 cut(s) 142, 278, 365
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 299
BsiSI CCGG 4 cut(s) 129, 286, 378, 725
BslI CCNNNNNNNGG 3 cut(s) 285, 333, 409
BsmAI GTCTC 5 cut(s) 124, 260, 352, 542, 612
BsmBI CGTCTC 2 cut(s) 124, 260
BsnI GGCC 3 cut(s) 142, 278, 365
Bso31I GGTCTC 2 cut(s) 542, 612
Bsp143I GATC 3 cut(s) 296, 646, 759
Bsp68I TCGCGA 1 cut(s) 810
BspACI CCGC 3 cut(s) 57, 177, 320
BspANI GGCC 3 cut(s) 142, 278, 365
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 3 cut(s) 179, 476, 810
BspLI GGNNCC 3 cut(s) 35, 277, 318
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 2 cut(s) 542, 612
BsrBI CCGCTC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 2 cut(s) 366, 394
BssAI RCCGGY 1 cut(s) 724
BssMI GATC 3 cut(s) 296, 646, 759
BssNI GRCGYC 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 331, 750
Bst6I CTCTTC 2 cut(s) 82, 822
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 189, 828
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 3 cut(s) 179, 476, 810
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 299, 649, 762
BstMAI GTCTC 5 cut(s) 124, 260, 352, 542, 612
BstMBI GATC 3 cut(s) 296, 646, 759
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 3 cut(s) 65, 148, 323
BstNSI RCATGY 2 cut(s) 645, 780
BstSCI CCNGG 1 cut(s) 376
BstUI CGCG 3 cut(s) 179, 476, 810
BstV1I GCAGC 2 cut(s) 46, 138
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 3 cut(s) 142, 278, 365
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 794
BtuMI TCGCGA 1 cut(s) 810
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 3 cut(s) 568, 642, 777
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 189, 828
DinI GGCGCC 1 cut(s) 318
DpnI GATC 3 cut(s) 298, 648, 761
DpnII GATC 3 cut(s) 296, 646, 759
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 82, 822
Eam1105I GACNNNNNGTC 1 cut(s) 386
EarI CTCTTC 2 cut(s) 82, 822
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 542, 612
Eco57I CTGAAG 1 cut(s) 566
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
Esp3I CGTCTC 2 cut(s) 124, 260
FaeI CATG 3 cut(s) 571, 645, 780
FaiI YATR 5 cut(s) 239, 251, 569, 643, 778
FatI CATG 3 cut(s) 567, 641, 776
FblI GTMKAC 2 cut(s) 657, 745
Fnu4HI GCNGC 3 cut(s) 60, 152, 320
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 60, 152, 320
FspBI CTAG 5 cut(s) 39, 509, 627, 638, 773
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 60, 152, 320
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 3 cut(s) 142, 278, 365
HapII CCGG 4 cut(s) 129, 286, 378, 725
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 3 cut(s) 571, 645, 780
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 7 cut(s) 173, 203, 291, 381, 502, 527, 805
HpaII CCGG 4 cut(s) 129, 286, 378, 725
HphI GGTGA 2 cut(s) 137, 590
Hpy166II GTNNAC 3 cut(s) 345, 658, 746
Hpy188III TCNNGA 5 cut(s) 160, 334, 403, 509, 809
Hpy8I GTNNAC 3 cut(s) 345, 658, 746
Hpy99I CGWCG 2 cut(s) 203, 274
HpyAV CCTTC 2 cut(s) 54, 569
HpyCH4III ACNGT 2 cut(s) 331, 750
HpyCH4V TGCA 3 cut(s) 154, 670, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 148, 323
HpyF3I CTNAG 2 cut(s) 189, 828
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 3 cut(s) 571, 645, 780
HspAI GCGC 1 cut(s) 317
KasI GGCGCC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 296, 646, 759
LmnI GCTCC 3 cut(s) 39, 67, 405
Lsp1109I GCAGC 2 cut(s) 46, 138
MaeI CTAG 5 cut(s) 39, 509, 627, 638, 773
MaeIII GTNAC 1 cut(s) 578
MalI GATC 3 cut(s) 298, 648, 761
MbiI CCGCTC 1 cut(s) 322
MboI GATC 3 cut(s) 296, 646, 759
MboII GAAGA 5 cut(s) 69, 126, 724, 800, 809
MluCI AATT 4 cut(s) 124, 208, 337, 467
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 3 cut(s) 167, 375, 799
MmeI TCCRAC 3 cut(s) 207, 390, 637
MnlI CCTC 6 cut(s) 153, 184, 307, 516, 590, 733
MroXI GAANNNNTTC 2 cut(s) 591, 816
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 4 cut(s) 129, 286, 378, 725
MspR9I CCNGG 1 cut(s) 378
MvnI CGCG 3 cut(s) 179, 476, 810
MwoI GCNNNNNNNGC 3 cut(s) 65, 148, 323
NarI GGCGCC 1 cut(s) 317
NciI CCSGG 1 cut(s) 378
NdeII GATC 3 cut(s) 296, 646, 759
NlaIII CATG 3 cut(s) 571, 645, 780
NlaIV GGNNCC 3 cut(s) 35, 277, 318
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 578
NruI TCGCGA 1 cut(s) 810
NspI RCATGY 2 cut(s) 645, 780
PaqCI CACCTGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 142
PdmI GAANNNNTTC 2 cut(s) 591, 816
PfeI GAWTC 4 cut(s) 203, 291, 502, 527
PflMI CCANNNNNTGG 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 61, 153, 321
Ple19I CGATCG 1 cut(s) 299
PleI GAGTC 3 cut(s) 167, 375, 799
PluTI GGCGCC 1 cut(s) 320
PpsI GAGTC 3 cut(s) 167, 375, 799
PspN4I GGNNCC 3 cut(s) 35, 277, 318
PspPI GGNCC 1 cut(s) 276
PvuI CGATCG 1 cut(s) 299
RruI TCGCGA 1 cut(s) 810
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 3 cut(s) 60, 152, 320
Sau3AI GATC 3 cut(s) 296, 646, 759
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 3 cut(s) 167, 375, 799
ScrFI CCNGG 1 cut(s) 378
SetI ASST 6 cut(s) 150, 171, 235, 580, 621, 774
SfoI GGCGCC 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 4 cut(s) 124, 208, 337, 467
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 57, 177, 320
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 5 cut(s) 39, 509, 627, 638, 773
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 331, 750
TaqI TCGA 3 cut(s) 161, 171, 595
TasI AATT 4 cut(s) 124, 208, 337, 467
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 4 cut(s) 203, 291, 502, 527
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 2 cut(s) 59, 151
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 2 cut(s) 106, 362
TspRI CASTG 1 cut(s) 801
Van91I CCANNNNNTGG 1 cut(s) 333
XapI RAATTY 2 cut(s) 337, 467
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 2 cut(s) 645, 780
XmiI GTMKAC 2 cut(s) 657, 745
XmnI GAANNNNTTC 2 cut(s) 591, 816
XspI CTAG 5 cut(s) 39, 509, 627, 638, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.