Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Reverse (-)

93288 .. 95008

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAAAGCGCTAATATTGTCCCTGTCCCTTCTCCCACTGCTTCTGCTGTTGCTGCTGCCGCAACTGCGAAGCCCTCTTACTTACTGCTACTAACAGTAACAAAAGCAAACCCGCCTTCAAAAACCCCAAACTTTGCGGCGAGTGTTTACTCGTCTTCTTTTATAAAACCAAACCATTCCGCCGTCTCCCATTCCAGTTGCAGACCTCATGCGCAGTGCTCATCTTCAAACAAGTTCGATTCGGCCTTCTTGTCTCAGGATGACGAGGATGATGATGATGACCAAGCGGTATCGGAGGATGGTGATGGTGACGTAAGCATAAATATGGATGCTGCGGCGGATGATATTGATATTGAGATTGATATTGATATTGATGTAGAGATAGAGAAGACGGGAAACAACTGTCGGAGGATCCGATCGGAAATTGGGATAGAGGCCCCACTCAACACTGTCTGGAATCTCTTGACTGATTATGAGAGATTGGCCGACTTCATTCCGGGACTTGCCGTCTGTCGATTGCTCCATAAGACAGACAACTACGCTCGACTTTTTCAGATTGGGCAGCAAAACTTGGCATTTGGGCTGAAATTCAATGCTAAAGGAATCGTAGATTGTTATGAGACTCCGCTTGAGATCCTTCCTAATTTGGGTCACAAGCGTGATATCGAATTTAACATGGTTGAAGGGGACTTTGAAATCTTTCAAGGAAAATGGTCTCTTCAACGGCTGAATAGGGAAATATCATGTGACGACTCATTGATAGAGCAGCAAATGCACACAACTCTTTCCTACTTGGTTGATGTAAAGCCAAAGCTGTGGTTGCCCGTTCGGCTTGTTGAGGGTAGACTTTGCAAGGAGATAAAAATTAACCTTGCATGCATCCGAGAAGAAGCGCTGAAACTAACTCACAGTAACACTATGCAGCACCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

312

Amino Acids

34.59

Weight (kDa)

4.88

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	844
AciI	CCGC	8 cut(s)	60, 113, 137, 180, 287, 335, 338, 626
AclWI	GGATC	3 cut(s)	406, 419, 628
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	587, 668
AfeI	AGCGCT	2 cut(s)	10, 894
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	7 cut(s)	120, 228, 592, 683, 695, 704, 722
AhdI	GACNNNNNGTC	1 cut(s)	506
AleI	CACNNNNGTG	1 cut(s)	657
AluBI	AGCT	1 cut(s)	814
AluI	AGCT	1 cut(s)	814
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	4 cut(s)	190, 258, 614, 720
AlwI	GGATC	3 cut(s)	406, 419, 628
Aor51HI	AGCGCT	2 cut(s)	10, 894
AoxI	GGCC	3 cut(s)	243, 435, 483
ApeKI	GCWGC	6 cut(s)	53, 56, 332, 562, 766, 922
ApoI	RAATTY	2 cut(s)	587, 668
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	3 cut(s)	11, 214, 895
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	314, 320
BamHI	GGATCC	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbsI	GAAGAC	2 cut(s)	147, 395
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	40, 43, 319, 574, 778
BccI	CCATC	2 cut(s)	293, 299
BceAI	ACGGC	3 cut(s)	167, 491, 740
BcgI	CGANNNNNNTGC	1 cut(s)	911
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	4 cut(s)	190, 258, 614, 720
BfoI	RGCGCY	2 cut(s)	12, 896
BglI	GCCNNNNNGGC	1 cut(s)	829
BisI	GCNGC	9 cut(s)	54, 57, 60, 138, 333, 336, 563, 767, 923
BlsI	GCNGC	9 cut(s)	55, 58, 61, 139, 334, 337, 564, 768, 924
Bme1390I	CCNGG	1 cut(s)	498
BmeRI	GACNNNNNGTC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	413, 438
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	319, 888
BpiI	GAAGAC	2 cut(s)	147, 395
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	195
BseGI	GGATG	6 cut(s)	265, 274, 304, 334, 346, 879
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	40, 43, 319, 574, 778
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	245, 437, 485
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	4 cut(s)	5, 11, 513, 701
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	4 cut(s)	190, 258, 614, 720
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	4 cut(s)	5, 11, 513, 701
BsnI	GGCC	3 cut(s)	245, 437, 485
Bso31I	GGTCTC	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	411, 416, 633
BspACI	CCGC	8 cut(s)	60, 113, 137, 180, 287, 335, 338, 626
BspANI	GGCC	3 cut(s)	245, 437, 485
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	413, 438
BspPI	GGATC	3 cut(s)	406, 419, 628
BspTNI	GGTCTC	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	411, 416, 633
Bst4CI	ACNGT	4 cut(s)	97, 404, 451, 911
Bst6I	CTCTTC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	877
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	6 cut(s)	265, 274, 304, 334, 346, 879
BstH2I	RGCGCY	2 cut(s)	12, 896
BstHHI	GCGC	3 cut(s)	11, 214, 895
BstKTI	GATC	3 cut(s)	414, 419, 636
BstMAI	GTCTC	4 cut(s)	190, 258, 614, 720
BstMBI	GATC	3 cut(s)	411, 416, 633
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 772, 820, 829
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	5 cut(s)	40, 43, 319, 574, 778
BstV2I	GAAGAC	2 cut(s)	147, 395
BstX2I	RGATCY	2 cut(s)	411, 633
BstXI	CCANNNNNNTGG	1 cut(s)	816
BstYI	RGATCY	2 cut(s)	411, 633
BsuRI	GGCC	3 cut(s)	245, 437, 485
BtsCI	GGATG	6 cut(s)	265, 274, 304, 334, 346, 879
BtsI	GCAGTG	2 cut(s)	36, 221
BtsIMutI	CAGTG	3 cut(s)	36, 221, 447
Cac8I	GCNNGC	1 cut(s)	877
CfoI	GCGC	3 cut(s)	11, 214, 895
Cfr13I	GGNCC	1 cut(s)	436
CviAII	CATG	4 cut(s)	209, 676, 744, 876
CviJI	RGCY	9 cut(s)	73, 245, 437, 485, 583, 727, 808, 814, 832
CviKI_1	RGCY	9 cut(s)	73, 245, 437, 485, 583, 727, 808, 814, 832
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	413, 418, 635
DpnII	GATC	3 cut(s)	411, 416, 633
DriI	GACNNNNNGTC	1 cut(s)	506
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	723
Eam1105I	GACNNNNNGTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	2 cut(s)	169, 353
Eco31I	GGTCTC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	664
Eco47III	AGCGCT	2 cut(s)	10, 894
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	881
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	4 cut(s)	212, 679, 747, 879
FaqI	GGGAC	4 cut(s)	5, 11, 513, 701
FatI	CATG	4 cut(s)	208, 675, 743, 875
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	9 cut(s)	54, 57, 60, 138, 333, 336, 563, 767, 923
FokI	GGATG	6 cut(s)	272, 281, 311, 341, 353, 866
Fsp4HI	GCNGC	9 cut(s)	54, 57, 60, 138, 333, 336, 563, 767, 923
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	3 cut(s)	10, 213, 894
GluI	GCNGC	9 cut(s)	54, 57, 60, 138, 333, 336, 563, 767, 923
HaeII	RGCGCY	2 cut(s)	12, 896
HaeIII	GGCC	3 cut(s)	245, 437, 485
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	3 cut(s)	11, 214, 895
Hin1II	CATG	4 cut(s)	212, 679, 747, 879
Hin6I	GCGC	3 cut(s)	9, 212, 893
HinP1I	GCGC	3 cut(s)	9, 212, 893
HinfI	GANTC	5 cut(s)	239, 457, 603, 622, 752
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	314, 320
Hpy166II	GTNNAC	2 cut(s)	148, 845
Hpy188I	TCNGA	6 cut(s)	295, 408, 416, 421, 555, 884
Hpy188III	TCNNGA	3 cut(s)	257, 454, 463
Hpy8I	GTNNAC	2 cut(s)	148, 845
HpyAV	CCTTC	5 cut(s)	39, 126, 256, 647, 677
HpyCH4III	ACNGT	4 cut(s)	97, 404, 451, 911
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	7 cut(s)	4, 201, 775, 852, 875, 879, 922
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 772, 820, 829
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	212, 679, 747, 879
HspAI	GCGC	3 cut(s)	9, 212, 893
Kzo9I	GATC	3 cut(s)	411, 416, 633
LmnI	GCTCC	1 cut(s)	525
LpnPI	CCDG	5 cut(s)	36, 208, 242, 439, 510
Lsp1109I	GCAGC	5 cut(s)	40, 43, 319, 574, 778
LweI	GCATC	2 cut(s)	319, 888
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	5 cut(s)	97, 308, 650, 746, 911
MalI	GATC	3 cut(s)	413, 418, 635
MboI	GATC	3 cut(s)	411, 416, 633
MboII	GAAGA	5 cut(s)	147, 216, 400, 710, 899
MflI	RGATCY	2 cut(s)	411, 633
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	423, 587, 643, 668, 864
MlyI	GAGTC	2 cut(s)	616, 746
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	85, 216, 259, 289, 402, 427, 832
Mph1103I	ATGCAT	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	3 cut(s)	672, 867, 934
MslI	CAYNNNNRTG	2 cut(s)	323, 657
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	6 cut(s)	53, 59, 65, 772, 820, 829
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	411, 416, 633
NlaIII	CATG	4 cut(s)	212, 679, 747, 879
NlaIV	GGNNCC	2 cut(s)	413, 438
NmuCI	GTSAC	3 cut(s)	308, 650, 746
NsbI	TGCGCA	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	881
NspI	RCATGY	1 cut(s)	879
OliI	CACNNNNGTG	1 cut(s)	657
PaeI	GCATGC	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	239, 457, 603
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	9 cut(s)	55, 58, 61, 139, 334, 337, 564, 768, 924
Ple19I	CGATCG	1 cut(s)	419
PleI	GAGTC	2 cut(s)	616, 746
PpsI	GAGTC	2 cut(s)	616, 746
PsiI	TTATAA	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	413, 438
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	411, 633
PvuI	CGATCG	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	323, 657
SaqAI	TTAA	3 cut(s)	672, 867, 934
SatI	GCNGC	9 cut(s)	54, 57, 60, 138, 333, 336, 563, 767, 923
Sau3AI	GATC	3 cut(s)	411, 416, 633
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	2 cut(s)	616, 746
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	208, 315, 816, 873
SfaNI	GCATC	2 cut(s)	319, 888
SmiMI	CAYNNNNRTG	2 cut(s)	323, 657
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	1 cut(s)	879
Sse9I	AATT	5 cut(s)	423, 587, 643, 668, 864
SsiI	CCGC	8 cut(s)	60, 113, 137, 180, 287, 335, 338, 626
SspI	AATATT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	97, 404, 451, 911
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	237, 514, 544, 666
TasI	AATT	5 cut(s)	423, 587, 643, 668, 864
TauI	GCSGC	3 cut(s)	62, 140, 338
TfiI	GAWTC	3 cut(s)	239, 457, 603
Tru1I	TTAA	3 cut(s)	672, 867, 934
Tru9I	TTAA	3 cut(s)	672, 867, 934
TscAI	CASTG	3 cut(s)	43, 221, 454
TseFI	GTSAC	3 cut(s)	308, 650, 746
TseI	GCWGC	6 cut(s)	53, 56, 332, 562, 766, 922
Tsp45I	GTSAC	3 cut(s)	308, 650, 746
TspDTI	ATGAA	1 cut(s)	481
TspRI	CASTG	3 cut(s)	43, 221, 454
XapI	RAATTY	2 cut(s)	587, 668
XceI	RCATGY	1 cut(s)	879
XmiI	GTMKAC	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.