FvH4_1g26070

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008041
Physical Location & Seq
Reverse (-)
17969964 .. 17972090
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26070.t3

Sequence Viewer

Length: 834 bp
ATGTCCTTGAAATCGATTTGCTTCTCTCTTTGCCTCCCTACCCCTTCTTCTCGTAACACCGCTCCAATCTCTTCCTTCCCGTTCAAAAATCCACACCACTTCCCCGTCTCCAATTCCAGCTCTTGTTCTTCCAGGACTCTCCTGCATTTTTCGAACAAGTTCGACTCCAAAGTGTTGTGTGAGGATGACGATGTGGATATAGTTGTAGATGAAGATATAGAGATAGAGATAGAGATAGAGAAGACGGGGCGGAACTGCCGGAGAATCCGATCGGAAATCGGGATTGAGGCGCCGCTCGCCACCGTCTGGAATTTGTTGACGGATTACGAGAGGCTGGCCGATTTCATTCCCGGACTGGCCGTCTGCCAGCTGCTCCACAAGTCGGAAAACTACGCTCGGCTGTTTCAGATTGGGGAACAGGACTTGGCGTTCGGGGTGAAATTCAACGCGAAAGGGGTGGTGGATTGCTATGAGAATGCTTTGGAGAGGATTGAGAATGATTTGGGGGGTGTGACTCTGAAGCGTGAGATTGAGTTTAGCATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAATGGTCTCTCCAACAGCTCAACACTAGTGGGGAGATGGCATCTGATCCTTTGGTAGGCCAGAAAGTACAAACAACTACTACTCTTTCATACTTGGTTGATGTAAAGCCGAAGATGTTGTTGCCGGTTAGGCTAGTGGAGGGTAGACTGTGCAAGGAGATCAAAATAAACCTAGCTTGCATCCGGGAAGAAGCACTGAAAATGACTCGCGAAACTCTTTTACTTGTAAGTGACACACCCACCGCATCTGATTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

278

Amino Acids

31.13

Weight (kDa)

5.05

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 95 - 197 4e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 306
AccBSI CCGCTC 2 cut(s) 62, 295
AccI GTMKAC 1 cut(s) 718
AccII CGCG 2 cut(s) 449, 783
AciI CCGC 4 cut(s) 60, 250, 293, 816
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 2 cut(s) 336, 357
AcsI RAATTY 2 cut(s) 310, 440
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 306, 382, 629
AgsI TTSAA 5 cut(s) 10, 85, 445, 548, 560
AhdI GACNNNNNGTC 1 cut(s) 359
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 4 cut(s) 120, 370, 592, 749
AluI AGCT 4 cut(s) 120, 370, 592, 749
Alw26I GTCTC 2 cut(s) 112, 585
AlwI GGATC 1 cut(s) 614
AoxI GGCC 3 cut(s) 336, 357, 631
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 310, 440
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
Asp700I GAANNNNTTC 2 cut(s) 158, 564
AspLEI GCGC 1 cut(s) 292
AsuC2I CCSGG 2 cut(s) 351, 758
AsuHPI GGTGA 2 cut(s) 448, 563
AsuII TTCGAA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 357
BccI CCATC 1 cut(s) 604
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 2 cut(s) 351, 758
BcoDI GTCTC 2 cut(s) 112, 585
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 3 cut(s) 600, 707, 746
BfoI RGCGCY 1 cut(s) 293
BglI GCCNNNNNGGC 1 cut(s) 703
BisI GCNGC 2 cut(s) 293, 371
BlsI GCNGC 2 cut(s) 294, 372
Bme1390I CCNGG 3 cut(s) 133, 351, 758
BmeRI GACNNNNNGTC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 3 cut(s) 133, 351, 758
BmsI GCATC 3 cut(s) 623, 762, 827
BpiI GAAGAC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 351, 758
Bsa29I ATCGAT 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 585
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 382, 629
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 133
BseCI ATCGAT 1 cut(s) 14
BseGI GGATG 2 cut(s) 190, 753
BseLI CCNNNNNNNGG 3 cut(s) 306, 382, 629
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 449, 783
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 3 cut(s) 338, 359, 633
BshNI GGYRCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 259, 351, 698, 757
BslI CCNNNNNNNGG 3 cut(s) 306, 382, 629
BsmAI GTCTC 2 cut(s) 112, 585
BsmBI CGTCTC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 3 cut(s) 338, 359, 633
Bso31I GGTCTC 1 cut(s) 585
Bsp119I TTCGAA 1 cut(s) 152
Bsp143I GATC 3 cut(s) 269, 619, 732
Bsp68I TCGCGA 1 cut(s) 783
BspACI CCGC 4 cut(s) 60, 250, 293, 816
BspANI GGCC 3 cut(s) 338, 359, 633
BspDI ATCGAT 1 cut(s) 14
BspFNI CGCG 2 cut(s) 449, 783
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 585
BsrBI CCGCTC 2 cut(s) 62, 295
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 697
BssMI GATC 3 cut(s) 269, 619, 732
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 304, 723
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 4 cut(s) 297, 336, 368, 751
BstENI CCTNNNNNAGG 1 cut(s) 627
BstF5I GGATG 2 cut(s) 190, 753
BstFNI CGCG 2 cut(s) 449, 783
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 272, 622, 735
BstMAI GTCTC 2 cut(s) 112, 585
BstMBI GATC 3 cut(s) 269, 619, 732
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 296, 703
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 3 cut(s) 131, 349, 756
BstUI CGCG 2 cut(s) 449, 783
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 3 cut(s) 338, 359, 633
BsuTUI ATCGAT 1 cut(s) 14
BtsCI GGATG 2 cut(s) 190, 753
BtsIMutI CAGTG 1 cut(s) 767
BtuMI TCGCGA 1 cut(s) 783
Cac8I GCNNGC 4 cut(s) 297, 336, 368, 751
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 14
Csp6I GTAC 1 cut(s) 641
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 1 cut(s) 541
CviQI GTAC 1 cut(s) 641
DinI GGCGCC 1 cut(s) 291
DpnI GATC 3 cut(s) 271, 621, 734
DpnII GATC 3 cut(s) 269, 619, 732
DriI GACNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 2 cut(s) 336, 357
Eam1104I CTCTTC 1 cut(s) 76
Eam1105I GACNNNNNGTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 76
EciI GGCGGA 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 131
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 544
FaiI YATR 5 cut(s) 200, 218, 471, 542, 664
FatI CATG 1 cut(s) 540
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 293, 371
FokI GGATG 2 cut(s) 197, 740
Fsp4HI GCNGC 2 cut(s) 293, 371
FspBI CTAG 3 cut(s) 600, 707, 746
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 293, 371
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 3 cut(s) 338, 359, 633
HapII CCGG 4 cut(s) 259, 351, 698, 757
HhaI GCGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 5 cut(s) 136, 164, 264, 514, 778
HpaII CCGG 4 cut(s) 259, 351, 698, 757
HphI GGTGA 2 cut(s) 448, 563
Hpy166II GTNNAC 2 cut(s) 318, 719
Hpy188I TCNGA 7 cut(s) 269, 274, 385, 408, 519, 619, 823
Hpy188III TCNNGA 3 cut(s) 280, 307, 782
Hpy8I GTNNAC 2 cut(s) 318, 719
HpyAV CCTTC 3 cut(s) 54, 85, 542
HpyCH4III ACNGT 2 cut(s) 304, 723
HpyCH4V TGCA 3 cut(s) 145, 726, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 703
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 1 cut(s) 290
KasI GGCGCC 1 cut(s) 289
Kzo9I GATC 3 cut(s) 269, 619, 732
LmnI GCTCC 2 cut(s) 67, 378
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 3 cut(s) 623, 762, 827
MaeI CTAG 3 cut(s) 600, 707, 746
MaeIII GTNAC 4 cut(s) 53, 511, 551, 803
MalI GATC 3 cut(s) 271, 621, 734
MbiI CCGCTC 2 cut(s) 62, 295
MboI GATC 3 cut(s) 269, 619, 732
MboII GAAGA 7 cut(s) 39, 63, 120, 224, 253, 697, 773
MluCI AATT 3 cut(s) 112, 310, 440
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 4 cut(s) 130, 158, 508, 772
MmeI TCCRAC 2 cut(s) 363, 610
MnlI CCTC 7 cut(s) 44, 175, 280, 324, 480, 563, 706
MroXI GAANNNNTTC 2 cut(s) 158, 564
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 4 cut(s) 259, 351, 698, 757
MspR9I CCNGG 3 cut(s) 133, 351, 758
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 2 cut(s) 449, 783
MwoI GCNNNNNNNGC 2 cut(s) 296, 703
NarI GGCGCC 1 cut(s) 290
NciI CCSGG 2 cut(s) 351, 758
NdeII GATC 3 cut(s) 269, 619, 732
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 1 cut(s) 291
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 3 cut(s) 511, 551, 803
NruI TCGCGA 1 cut(s) 783
NspV TTCGAA 1 cut(s) 152
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 2 cut(s) 158, 564
PfeI GAWTC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 306
PfoI TCCNGGA 3 cut(s) 131, 349, 756
PkrI GCNGC 2 cut(s) 294, 372
Ple19I CGATCG 1 cut(s) 272
PleI GAGTC 4 cut(s) 130, 158, 508, 772
PluTI GGCGCC 1 cut(s) 293
PpsI GAGTC 4 cut(s) 130, 158, 508, 772
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 291
PvuI CGATCG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 370
RruI TCGCGA 1 cut(s) 783
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SatI GCNGC 2 cut(s) 293, 371
Sau3AI GATC 3 cut(s) 269, 619, 732
SchI GAGTC 4 cut(s) 130, 158, 508, 772
ScrFI CCNGG 3 cut(s) 133, 351, 758
SetI ASST 6 cut(s) 122, 372, 553, 594, 747, 751
SfaNI GCATC 3 cut(s) 623, 762, 827
SfoI GGCGCC 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 3 cut(s) 112, 310, 440
SsiI CCGC 4 cut(s) 60, 250, 293, 816
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 3 cut(s) 600, 707, 746
StyD4I CCNGG 3 cut(s) 131, 349, 756
TaaI ACNGT 2 cut(s) 304, 723
TaqI TCGA 4 cut(s) 14, 152, 162, 568
TasI AATT 3 cut(s) 112, 310, 440
TatI WGTACW 1 cut(s) 640
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 1 cut(s) 264
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 3 cut(s) 511, 551, 803
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 3 cut(s) 511, 551, 803
TspDTI ATGAA 3 cut(s) 225, 334, 651
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 774
Van91I CCANNNNNTGG 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 627
XapI RAATTY 2 cut(s) 310, 440
XmiI GTMKAC 1 cut(s) 718
XmnI GAANNNNTTC 2 cut(s) 158, 564
XspI CTAG 3 cut(s) 600, 707, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.