Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Forward (+)

20070151 .. 20070777

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0219900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTATGCGCTCACCAGGAAGATTGTATGTACTAGACAGGCGTTGGAATCTTGGCAGCAAAACACATTTAGACTGAGGCAGCAGCGGATGTTTGAGGTGCGGAGTAGACTTGAGTTTTTGATGGGGGAACCGATTACTGCAGCTTTCTTGGCAGAGAAGAAAGAGTTGATGTTGTCATTACAAAGTTTGTTGGCACAGGAAGAGGCCTTTTGGAAGCAGAGGGCTAAGATAACTTGGTTACAGGAGGGTGATAGGAATTCAGGTTTTTTTCACAGGAAAGCTGCAAATAGGAAACGGAAAAATTCTTTGTTGGATTTGTTTGATGTGAATGGAGTGTGGCAGGAGGATGATGATGGATTGGAGAGGGTTGTATCCTCCTATTTCTCGAATATGTTTACTGCATCTACTCTGGATAGTGAAGCAGTGGAACTTACTTTGGGTGCGATACAGCCATGTGTTACCTCTGAGATGAACCAGAAACTTTGTGATCCGTACTCTGAGGAGGAGGTTAAGATTGCTTTGTTCCAGATGTATCCAACCAAATCACCGGGTCCTGATGGTATGCCTCCTCTATTCTTCCAACATTATTGGGATTCTATTGGTAGGGATGTCACTGCTGCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

208

Amino Acids

24.07

Weight (kDa)

5.55

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AciI	CCGC	2 cut(s)	85, 100
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	256, 301
AfaI	GTAC	2 cut(s)	31, 494
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	2 cut(s)	143, 281
AluI	AGCT	2 cut(s)	143, 281
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	6 cut(s)	55, 79, 82, 140, 281, 617
ApoI	RAATTY	2 cut(s)	256, 301
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	4, 260, 537
AvaII	GGWCC	1 cut(s)	551
BbvI	GCAGC	6 cut(s)	67, 91, 94, 152, 268, 604
BccI	CCATC	3 cut(s)	115, 347, 551
BciT130I	CCWGG	1 cut(s)	16
BciVI	GTATCC	2 cut(s)	382, 543
BcnI	CCSGG	1 cut(s)	549
BfaI	CTAG	2 cut(s)	33, 625
BfmI	CTRYAG	2 cut(s)	138, 618
BfuI	GTATCC	2 cut(s)	382, 543
BisI	GCNGC	6 cut(s)	56, 80, 83, 141, 282, 618
BlsI	GCNGC	6 cut(s)	57, 81, 84, 142, 283, 619
Bme1390I	CCNGG	2 cut(s)	16, 549
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	129, 552
BmrFI	CCNGG	2 cut(s)	16, 549
BmsI	GCATC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	93, 352, 613
BseMII	CTCAG	3 cut(s)	65, 456, 489
BseRI	GAGGAG	3 cut(s)	515, 518, 558
BseXI	GCAGC	6 cut(s)	67, 91, 94, 152, 268, 604
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	548
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	2 cut(s)	85, 100
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	3 cut(s)	66, 457, 490
BspLI	GGNNCC	2 cut(s)	129, 552
BspMAI	CTGCAG	2 cut(s)	142, 622
BspPI	GGATC	1 cut(s)	482
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	74, 225, 465, 498
BstF5I	GGATG	3 cut(s)	93, 352, 613
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 547
BstSFI	CTRYAG	2 cut(s)	138, 618
BstV1I	GCAGC	6 cut(s)	67, 91, 94, 152, 268, 604
BsuI	GTATCC	2 cut(s)	382, 543
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	93, 352, 613
BtsI	GCAGTG	2 cut(s)	429, 612
BtsIMutI	CAGTG	2 cut(s)	429, 612
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	30, 493
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	5 cut(s)	143, 206, 224, 281, 451
CviKI_1	RGCY	5 cut(s)	143, 206, 224, 281, 451
CviQI	GTAC	2 cut(s)	30, 493
DdeI	CTNAG	4 cut(s)	74, 225, 465, 498
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	456
FaiI	YATR	5 cut(s)	6, 28, 392, 454, 563
FatI	CATG	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	6 cut(s)	56, 80, 83, 141, 282, 618
FokI	GGATG	3 cut(s)	100, 359, 620
Fsp4HI	GCNGC	6 cut(s)	56, 80, 83, 141, 282, 618
FspBI	CTAG	2 cut(s)	33, 625
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	6 cut(s)	56, 80, 83, 141, 282, 618
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	548
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	47, 593
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	3 cut(s)	4, 260, 537
Hpy166II	GTNNAC	2 cut(s)	107, 396
Hpy188I	TCNGA	2 cut(s)	466, 499
Hpy188III	TCNNGA	4 cut(s)	385, 410, 526, 554
Hpy8I	GTNNAC	2 cut(s)	107, 396
HpyCH4V	TGCA	4 cut(s)	140, 284, 401, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	4 cut(s)	74, 225, 465, 498
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	487
Lsp1109I	GCAGC	6 cut(s)	67, 91, 94, 152, 268, 604
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	33, 625
MaeIII	GTNAC	3 cut(s)	237, 457, 610
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	4 cut(s)	31, 169, 212, 568
MluCI	AATT	2 cut(s)	256, 301
MmeI	TCCRAC	4 cut(s)	24, 291, 560, 604
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	16, 549
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	2 cut(s)	129, 552
NmuCI	GTSAC	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	47, 593
PkrI	GCNGC	6 cut(s)	57, 81, 84, 142, 283, 619
PpuMI	RGGWCCY	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	129, 552
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	2 cut(s)	142, 622
RsaI	GTAC	2 cut(s)	31, 494
RsaNI	GTAC	2 cut(s)	30, 493
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	6 cut(s)	56, 80, 83, 141, 282, 618
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	16, 549
SetI	ASST	6 cut(s)	99, 145, 265, 283, 464, 510
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	138, 618
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	256, 301
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	85, 100
SspMI	CTAG	2 cut(s)	33, 625
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	14, 547
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	256, 301
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	47, 593
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	429, 619
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	6 cut(s)	55, 79, 82, 140, 281, 617
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	2 cut(s)	310, 480
TspRI	CASTG	2 cut(s)	429, 619
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	256, 301
XmiI	GTMKAC	1 cut(s)	106
XspI	CTAG	2 cut(s)	33, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.