Rh3CG302400

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008041
Physical Location & Seq
Reverse (-)
31467622 .. 31469515
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG302400.1

Sequence Viewer

Length: 645 bp
ATGTCCTTGAAATCAATCTGCTTCTCTGTTTGGCTCCCTAGCCCTTCTCCGAGCACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGATCTTCAAGGCCGCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTTCTTGTCTGAGGATGACGATGACGATTCCGATTCAGAAGCAGAGAAATCGGAAGTTGATATAGATGTAGATATAGAGTTAGAGATAGAGAAGACGGGGACCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAACTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGGCTTTTTCAGATTGGGGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGCTAATGATTTGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTTAACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAGTGGTCTCTCCAACAGGTACATATACACTTCATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

4.58

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 105 - 207 3.3e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 2 cut(s) 179, 479
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 4 cut(s) 57, 143, 177, 323
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 1 cut(s) 624
AfiI CCNNNNNNNGG 3 cut(s) 288, 336, 412
AgsI TTSAA 6 cut(s) 10, 72, 138, 475, 578, 590
AhdI GACNNNNNGTC 1 cut(s) 389
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 4 cut(s) 124, 355, 545, 615
AlwI GGATC 1 cut(s) 139
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 140, 366
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 1 cut(s) 470
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 279
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 4 cut(s) 124, 355, 545, 615
BfaI CTAG 3 cut(s) 39, 512, 643
BfoI RGCGCY 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 60, 143, 152, 323
BlsI GCNGC 4 cut(s) 61, 144, 153, 324
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 35, 280, 321
BmrFI CCNGG 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 545, 615
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 336, 412
Bse1I ACTGG 2 cut(s) 369, 397
Bse3DI GCAATG 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 128
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 288, 336, 412
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 369, 397
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 2 cut(s) 179, 479
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 142, 368
BshNI GGYRCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 3 cut(s) 129, 289, 381
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 288, 336, 412
BsmAI GTCTC 4 cut(s) 124, 355, 545, 615
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 2 cut(s) 142, 368
Bso31I GGTCTC 2 cut(s) 545, 615
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 2 cut(s) 131, 299
BspACI CCGC 4 cut(s) 57, 143, 177, 323
BspANI GGCC 2 cut(s) 142, 368
BspCNI CTCAG 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 128
BspFNI CGCG 2 cut(s) 179, 479
BspLI GGNNCC 3 cut(s) 35, 280, 321
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 2 cut(s) 545, 615
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 369, 397
BssMI GATC 2 cut(s) 131, 299
BssNI GRCGYC 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 179, 479
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 134, 302
BstMAI GTCTC 4 cut(s) 124, 355, 545, 615
BstMBI GATC 2 cut(s) 131, 299
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 4 cut(s) 65, 148, 151, 326
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 2 cut(s) 179, 479
BstV1I GCAGC 2 cut(s) 46, 138
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 142, 368
BtsCI GGATG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 623
CviAII CATG 1 cut(s) 571
CviJI RGCY 7 cut(s) 34, 42, 142, 169, 368, 430, 466
CviKI_1 RGCY 7 cut(s) 34, 42, 142, 169, 368, 430, 466
CviQI GTAC 1 cut(s) 623
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 321
DpnI GATC 2 cut(s) 133, 301
DpnII GATC 2 cut(s) 131, 299
DriI GACNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 82
Eco31I GGTCTC 2 cut(s) 545, 615
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 569
EgeI GGCGCC 1 cut(s) 321
EheI GGCGCC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 574
FaiI YATR 5 cut(s) 242, 254, 572, 627, 629
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 60, 143, 152, 323
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 60, 143, 152, 323
FspBI CTAG 3 cut(s) 39, 512, 643
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 60, 143, 152, 323
GsuI CTGGAG 1 cut(s) 389
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 142, 368
HapII CCGG 3 cut(s) 129, 289, 381
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 6 cut(s) 173, 206, 212, 294, 384, 505
HpaII CCGG 3 cut(s) 129, 289, 381
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 1 cut(s) 348
Hpy188III TCNNGA 5 cut(s) 129, 160, 337, 406, 512
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 54, 572
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 148, 151, 326
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 1 cut(s) 320
KasI GGCGCC 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 128
Kzo9I GATC 2 cut(s) 131, 299
LmnI GCTCC 4 cut(s) 39, 67, 408, 445
Lsp1109I GCAGC 2 cut(s) 46, 138
MaeI CTAG 3 cut(s) 39, 512, 643
MaeIII GTNAC 1 cut(s) 581
MalI GATC 2 cut(s) 133, 301
MbiI CCGCTC 1 cut(s) 325
MboI GATC 2 cut(s) 131, 299
MboII GAAGA 3 cut(s) 69, 126, 283
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 124, 470
Mly113I GGCGCC 1 cut(s) 320
MlyI GAGTC 2 cut(s) 167, 378
MmeI TCCRAC 2 cut(s) 393, 640
MnlI CCTC 4 cut(s) 184, 310, 519, 593
MroI TCCGGA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 129, 289, 381
MspR9I CCNGG 1 cut(s) 381
MvnI CGCG 2 cut(s) 179, 479
MwoI GCNNNNNNNGC 4 cut(s) 65, 148, 151, 326
NarI GGCGCC 1 cut(s) 320
NciI CCSGG 1 cut(s) 381
NdeII GATC 2 cut(s) 131, 299
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 3 cut(s) 35, 280, 321
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 581
PaqCI CACCTGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 4 cut(s) 206, 212, 294, 505
PflMI CCANNNNNTGG 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 4 cut(s) 61, 144, 153, 324
Ple19I CGATCG 1 cut(s) 302
PleI GAGTC 2 cut(s) 167, 378
PluTI GGCGCC 1 cut(s) 323
PpsI GAGTC 2 cut(s) 167, 378
PspN4I GGNNCC 3 cut(s) 35, 280, 321
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 131
PvuI CGATCG 1 cut(s) 302
RsaI GTAC 1 cut(s) 624
RsaNI GTAC 1 cut(s) 623
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 4 cut(s) 60, 143, 152, 323
Sau3AI GATC 2 cut(s) 131, 299
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 2 cut(s) 167, 378
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 56
SetI ASST 4 cut(s) 150, 171, 583, 624
SfoI GGCGCC 1 cut(s) 321
SinI GGWCC 1 cut(s) 279
Sse9I AATT 2 cut(s) 124, 470
SsiI CCGC 4 cut(s) 57, 143, 177, 323
SspDI GGCGCC 1 cut(s) 319
SspMI CTAG 3 cut(s) 39, 512, 643
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 161, 171, 598
TasI AATT 2 cut(s) 124, 470
TauI GCSGC 2 cut(s) 145, 325
TfiI GAWTC 4 cut(s) 206, 212, 294, 505
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 59, 151
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 364, 625
TspGWI ACGGA 2 cut(s) 106, 365
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 470
XbaI TCTAGA 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 3 cut(s) 39, 512, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.