Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001272.1

Orthogroup ID

OG0008041

Physical Location & Seq

Genomic Coordinates Forward (+)

75503 .. 76919

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001272.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtccttgaaatcaatctgcttcactgtttggctccctagcccttctccgagcaccgctgctcctgcttcaatctcttccccctattcctttcctttgagaaatccaaactactccgtctccaattccggttcttcaaggccgcacctgctgcatttctcgaccaagctcgactccgcgttcttgtctgaggatgacaacgattccgattcagaagcagagaaatcggaagttgatatagatgtagatatagagttagagatagagaagacgggggccaactgccggagaatccgatcggaaatccgaatagaggcgccactcgccaccgtctggaacttgttgacggattacgagagactggccgacttcattcccggactcgccgtctgccagttgctccagaagtcggagaactacgctcggctttttcagattggggagcaggacttggcgttcgggctgaaattcaacgcgaaaggagtggtggattgttttgagaatcctctagagagcattgctaatgatttggggggtcttactctgaagcgtgatattgagtttaacatggttgaaggtgactttgaaatctttcgaggaaagtggtctctccaacagcttaacactagtggggaaatggcatgtgatcctttgatagaccagaaaatgcaaacaacaaccagtctttcctacttggttgatgtaaagccgaagatgttgttgccggttcagctggttgagggtagactctgcaaggagatcaaaataaacctagcttgcatccgggaagaagcactgaaaatgactcgcgaaactcttcttactcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc

Protein Analysis

276

Amino Acids

30.92

Weight (kDa)

4.78

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01650 AT4G01650 AT4G01650
fragaria_vesca	FvH4_1g26070 FvH4_1g26070 FvH4_1g26070 FvH4_3g32461
malus_domestica	MD09G1291800.v1.1
prunus_persica	Prupe.3G000900_v2.0.a1
pyrus_communis	pycom09g19990
rosa_chinensis	RchiOBHm_Chr3g0485541
rosa_laevigata	RLG00000023144
rosa_multiflora	Rmu_co8153526.1_g000001 Rmu_sc0001272.1_g000016 Rmu_sc0004711.1_g000018
rosa_roxburghii	Rroxscaffold_6G00396660 Rroxscaffold_6G00396950
rosa_rugosa	Rorug03G0219900 Rorug03G0220000
rosa_samantha	Rh3AG268400 Rh3BG304100 Rh3CG302400 Rh3DG299000
rosa_wichuraiana	Rw3G023940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	745
AccII	CGCG	3 cut(s)	179, 476, 810
AciI	CCGC	3 cut(s)	57, 143, 177
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	317
AfiI	CCNNNNNNNGG	4 cut(s)	285, 313, 333, 409
AgsI	TTSAA	6 cut(s)	10, 72, 138, 472, 575, 587
AhdI	GACNNNNNGTC	1 cut(s)	386
AhlI	ACTAGT	1 cut(s)	626
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	169, 619, 733, 776
AluI	AGCT	4 cut(s)	169, 619, 733, 776
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	3 cut(s)	124, 352, 612
AlwI	GGATC	1 cut(s)	641
AoxI	GGCC	3 cut(s)	140, 276, 363
ApeKI	GCWGC	2 cut(s)	59, 151
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	2 cut(s)	591, 816
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	2 cut(s)	378, 785
AsuHPI	GGTGA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	46, 138
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BcnI	CCSGG	2 cut(s)	378, 785
BcoDI	GTCTC	3 cut(s)	124, 352, 612
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	4 cut(s)	39, 509, 627, 773
BfoI	RGCGCY	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	3 cut(s)	60, 143, 152
BlsI	GCNGC	3 cut(s)	61, 144, 153
Bme1390I	CCNGG	2 cut(s)	378, 785
BmeRI	GACNNNNNGTC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	35, 277, 318
BmrFI	CCNGG	2 cut(s)	378, 785
BmsI	GCATC	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	378, 785
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	612
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 313, 333, 409
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	3 cut(s)	366, 394, 681
Bse3DI	GCAATG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	199, 780
BseLI	CCNNNNNNNGG	4 cut(s)	285, 313, 333, 409
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	366, 394, 681
BseXI	GCAGC	2 cut(s)	46, 138
Bsh1236I	CGCG	3 cut(s)	179, 476, 810
Bsh1285I	CGRYCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	142, 278, 365
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	5 cut(s)	129, 286, 378, 725, 784
BslI	CCNNNNNNNGG	4 cut(s)	285, 313, 333, 409
BsmAI	GTCTC	3 cut(s)	124, 352, 612
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	142, 278, 365
Bso31I	GGTCTC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	296, 646, 759
Bsp68I	TCGCGA	1 cut(s)	810
BspACI	CCGC	3 cut(s)	57, 143, 177
BspANI	GGCC	3 cut(s)	142, 278, 365
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	179, 476, 810
BspLI	GGNNCC	3 cut(s)	35, 277, 318
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	366, 394, 681
BssAI	RCCGGY	1 cut(s)	724
BssMI	GATC	3 cut(s)	296, 646, 759
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	28, 331
Bst6I	CTCTTC	2 cut(s)	82, 822
BstACI	GRCGYC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	199, 780
BstFNI	CGCG	3 cut(s)	179, 476, 810
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	299, 649, 762
BstMAI	GTCTC	3 cut(s)	124, 352, 612
BstMBI	GATC	3 cut(s)	296, 646, 759
BstMCI	CGRYCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 323, 730
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	376, 783
BstUI	CGCG	3 cut(s)	179, 476, 810
BstV1I	GCAGC	2 cut(s)	46, 138
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	142, 278, 365
BtsCI	GGATG	2 cut(s)	199, 780
BtsIMutI	CAGTG	2 cut(s)	24, 794
BtuMI	TCGCGA	1 cut(s)	810
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	778
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	276
CviAII	CATG	2 cut(s)	568, 642
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	3 cut(s)	298, 648, 761
DpnII	GATC	3 cut(s)	296, 646, 759
DriI	GACNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	82, 822
Eam1105I	GACNNNNNGTC	1 cut(s)	386
EarI	CTCTTC	2 cut(s)	82, 822
Eco31I	GGTCTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	566
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	571, 645
FaiI	YATR	4 cut(s)	239, 251, 569, 643
FatI	CATG	2 cut(s)	567, 641
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	3 cut(s)	60, 143, 152
FokI	GGATG	2 cut(s)	206, 767
Fsp4HI	GCNGC	3 cut(s)	60, 143, 152
FspBI	CTAG	4 cut(s)	39, 509, 627, 773
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	3 cut(s)	60, 143, 152
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	142, 278, 365
HapII	CCGG	5 cut(s)	129, 286, 378, 725, 784
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	571, 645
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	8 cut(s)	173, 203, 209, 291, 381, 502, 747, 805
HpaII	CCGG	5 cut(s)	129, 286, 378, 725, 784
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	345, 746
Hpy188III	TCNNGA	5 cut(s)	160, 334, 403, 509, 809
Hpy8I	GTNNAC	2 cut(s)	345, 746
HpyAV	CCTTC	2 cut(s)	54, 569
HpyCH4III	ACNGT	2 cut(s)	28, 331
HpyCH4V	TGCA	4 cut(s)	154, 670, 753, 780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 323, 730
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	571, 645
HspAI	GCGC	1 cut(s)	317
KasI	GGCGCC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	296, 646, 759
LmnI	GCTCC	4 cut(s)	39, 67, 405, 442
Lsp1109I	GCAGC	2 cut(s)	46, 138
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	4 cut(s)	39, 509, 627, 773
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	3 cut(s)	298, 648, 761
MboI	GATC	3 cut(s)	296, 646, 759
MboII	GAAGA	6 cut(s)	69, 126, 280, 724, 800, 809
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	124, 467
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	4 cut(s)	167, 375, 741, 799
MmeI	TCCRAC	2 cut(s)	390, 637
MnlI	CCTC	5 cut(s)	184, 307, 516, 590, 733
MroXI	GAANNNNTTC	2 cut(s)	591, 816
MseI	TTAA	2 cut(s)	564, 621
MspA1I	CMGCKG	2 cut(s)	59, 733
MspI	CCGG	5 cut(s)	129, 286, 378, 725, 784
MspR9I	CCNGG	2 cut(s)	378, 785
MvnI	CGCG	3 cut(s)	179, 476, 810
MwoI	GCNNNNNNNGC	5 cut(s)	65, 148, 151, 323, 730
NarI	GGCGCC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	378, 785
NdeII	GATC	3 cut(s)	296, 646, 759
NlaIII	CATG	2 cut(s)	571, 645
NlaIV	GGNNCC	3 cut(s)	35, 277, 318
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	578
NruI	TCGCGA	1 cut(s)	810
NspI	RCATGY	1 cut(s)	645
PaqCI	CACCTGC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	591, 816
PfeI	GAWTC	4 cut(s)	203, 209, 291, 502
PflMI	CCANNNNNTGG	1 cut(s)	333
PfoI	TCCNGGA	2 cut(s)	376, 783
PkrI	GCNGC	3 cut(s)	61, 144, 153
Ple19I	CGATCG	1 cut(s)	299
PleI	GAGTC	4 cut(s)	167, 375, 741, 799
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	4 cut(s)	167, 375, 741, 799
PspN4I	GGNNCC	3 cut(s)	35, 277, 318
PspPI	GGNCC	1 cut(s)	276
PvuI	CGATCG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	733
RruI	TCGCGA	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	564, 621
SatI	GCNGC	3 cut(s)	60, 143, 152
Sau3AI	GATC	3 cut(s)	296, 646, 759
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	4 cut(s)	167, 375, 741, 799
ScrFI	CCNGG	2 cut(s)	378, 785
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	150, 171, 580, 621, 735, 774, 778
SfaNI	GCATC	1 cut(s)	789
SfoI	GGCGCC	1 cut(s)	318
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	124, 467
SsiI	CCGC	3 cut(s)	57, 143, 177
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	4 cut(s)	39, 509, 627, 773
StyD4I	CCNGG	2 cut(s)	376, 783
TaaI	ACNGT	2 cut(s)	28, 331
TaqI	TCGA	3 cut(s)	161, 171, 595
TasI	AATT	2 cut(s)	124, 467
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	203, 209, 291, 502
Tru1I	TTAA	2 cut(s)	564, 621
Tru9I	TTAA	2 cut(s)	564, 621
TscAI	CASTG	2 cut(s)	31, 801
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	59, 151
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	106, 362
TspRI	CASTG	2 cut(s)	31, 801
Van91I	CCANNNNNTGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	745
XmnI	GAANNNNTTC	2 cut(s)	591, 816
XspI	CTAG	4 cut(s)	39, 509, 627, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.