Rh3BG304100

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008041
Physical Location & Seq
Reverse (-)
30707905 .. 30710199
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG304100.1

Sequence Viewer

Length: 651 bp
ATGTCCTTGAAATCAATCTGCTTCTCTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCTCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTCCTTGTCTGAGTATGACGATTCCGATTCAGAAGCAGAGAAATCGGAAGTTGATATAGATGTAGATATAGAGTTAGAGATAGAGAAGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAATTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCATCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGGCTTTTTCAGATTGGAGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTATGAGAATCCTCTAGAGAGCATTGCTAATGATTTGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTCAACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGCAAGTGGTCTCTCCAACAGGTACATCATTTTCTATATTGCTTTACTGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

216

Amino Acids

24.11

Weight (kDa)

4.73

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 103 - 205 7.9e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 2 cut(s) 179, 473
AciI CCGC 3 cut(s) 57, 177, 317
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 334, 464
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 55, 618
AfiI CCNNNNNNNGG 3 cut(s) 282, 330, 406
AgsI TTSAA 7 cut(s) 10, 72, 138, 469, 562, 572, 584
AhdI GACNNNNNGTC 1 cut(s) 178
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 4 cut(s) 124, 349, 539, 609
AoxI GGCC 3 cut(s) 140, 273, 360
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 2 cut(s) 334, 464
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 137, 587
BanI GGYRCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 46, 138
BccI CCATC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 4 cut(s) 124, 349, 539, 609
BfaI CTAG 2 cut(s) 39, 506
BfoI RGCGCY 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 60, 152, 317
BlsI GCNGC 3 cut(s) 61, 153, 318
Bme1390I CCNGG 1 cut(s) 375
BmeRI GACNNNNNGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 3 cut(s) 35, 274, 315
BmrFI CCNGG 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 314
BsaI GGTCTC 2 cut(s) 539, 609
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 330, 406
Bse1I ACTGG 2 cut(s) 363, 391
Bse3DI GCAATG 1 cut(s) 513
BseLI CCNNNNNNNGG 3 cut(s) 282, 330, 406
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 363, 391
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 2 cut(s) 179, 473
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 142, 275, 362
BshNI GGYRCC 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 296
BsiSI CCGG 3 cut(s) 129, 283, 375
BslI CCNNNNNNNGG 3 cut(s) 282, 330, 406
BsmAI GTCTC 4 cut(s) 124, 349, 539, 609
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 142, 275, 362
Bso31I GGTCTC 2 cut(s) 539, 609
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 3 cut(s) 57, 177, 317
BspANI GGCC 3 cut(s) 142, 275, 362
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 179, 473
BspLI GGNNCC 3 cut(s) 35, 274, 315
BspMI ACCTGC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 2 cut(s) 539, 609
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 363, 391
BssMI GATC 1 cut(s) 293
BssNI GRCGYC 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 328, 643
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 179, 473
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 4 cut(s) 124, 349, 539, 609
BstMBI GATC 1 cut(s) 293
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 3 cut(s) 65, 148, 320
BstSCI CCNGG 1 cut(s) 373
BstUI CGCG 2 cut(s) 179, 473
BstV1I GCAGC 2 cut(s) 46, 138
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 3 cut(s) 142, 275, 362
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 54, 617
CviAII CATG 1 cut(s) 565
CviJI RGCY 8 cut(s) 34, 42, 142, 169, 275, 362, 424, 460
CviKI_1 RGCY 8 cut(s) 34, 42, 142, 169, 275, 362, 424, 460
CviQI GTAC 2 cut(s) 54, 617
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 315
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 539, 609
Eco57I CTGAAG 1 cut(s) 563
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 568
FaiI YATR 6 cut(s) 195, 236, 248, 495, 566, 631
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 60, 152, 317
Fsp4HI GCNGC 3 cut(s) 60, 152, 317
FspBI CTAG 2 cut(s) 39, 506
GlaI GCGC 1 cut(s) 315
GluI GCNGC 3 cut(s) 60, 152, 317
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 3 cut(s) 142, 275, 362
HapII CCGG 3 cut(s) 129, 283, 375
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 1 cut(s) 568
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 6 cut(s) 173, 200, 206, 288, 378, 499
HpaII CCGG 3 cut(s) 129, 283, 375
HphI GGTGA 2 cut(s) 137, 587
Hpy166II GTNNAC 1 cut(s) 342
Hpy188III TCNNGA 5 cut(s) 160, 331, 400, 506, 648
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 2 cut(s) 54, 566
HpyCH4III ACNGT 2 cut(s) 328, 643
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 148, 320
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 1 cut(s) 568
HspAI GCGC 1 cut(s) 314
KasI GGCGCC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 3 cut(s) 39, 67, 402
Lsp1109I GCAGC 2 cut(s) 46, 138
MaeI CTAG 2 cut(s) 39, 506
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 295
MbiI CCGCTC 1 cut(s) 319
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 69, 126, 277
MluCI AATT 3 cut(s) 124, 334, 464
Mly113I GGCGCC 1 cut(s) 314
MlyI GAGTC 2 cut(s) 167, 372
MmeI TCCRAC 2 cut(s) 387, 634
MnlI CCTC 4 cut(s) 153, 304, 513, 587
MroXI GAANNNNTTC 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 129, 283, 375
MspR9I CCNGG 1 cut(s) 375
MvnI CGCG 2 cut(s) 179, 473
MwoI GCNNNNNNNGC 3 cut(s) 65, 148, 320
NarI GGCGCC 1 cut(s) 314
NciI CCSGG 1 cut(s) 375
NdeII GATC 1 cut(s) 293
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 3 cut(s) 35, 274, 315
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 575
PaqCI CACCTGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 200, 206, 288, 499
PflMI CCANNNNNTGG 1 cut(s) 330
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 3 cut(s) 61, 153, 318
Ple19I CGATCG 1 cut(s) 296
PleI GAGTC 2 cut(s) 167, 372
PluTI GGCGCC 1 cut(s) 317
PpsI GAGTC 2 cut(s) 167, 372
PspN4I GGNNCC 3 cut(s) 35, 274, 315
PspPI GGNCC 1 cut(s) 273
PvuI CGATCG 1 cut(s) 296
RsaI GTAC 2 cut(s) 55, 618
RsaNI GTAC 2 cut(s) 54, 617
SatI GCNGC 3 cut(s) 60, 152, 317
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 167, 372
ScrFI CCNGG 1 cut(s) 375
SetI ASST 4 cut(s) 150, 171, 577, 618
SfoI GGCGCC 1 cut(s) 315
Sse9I AATT 3 cut(s) 124, 334, 464
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 57, 177, 317
SspDI GGCGCC 1 cut(s) 313
SspMI CTAG 2 cut(s) 39, 506
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 328, 643
TaqI TCGA 3 cut(s) 161, 171, 592
TasI AATT 3 cut(s) 124, 334, 464
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 4 cut(s) 200, 206, 288, 499
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 59, 151
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 358
TspGWI ACGGA 2 cut(s) 106, 359
Van91I CCANNNNNTGG 1 cut(s) 330
XapI RAATTY 2 cut(s) 334, 464
XbaI TCTAGA 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 39, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.