Rw3G023940

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008041
Physical Location & Seq
Reverse (-)
30499006 .. 30500750
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023940.1

Sequence Viewer

Length: 834 bp
ATGTCCTTGAAATCAATCTGCTTCACTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCGCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTTCTTGTCTGAGGATGACGATGACGATTCCGATTCAGAAGCAGAGAAATCGGAAGTTGATATAGATGTAGATATAGAGTTAGAGATAGAGAAGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAACTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGGCTTTTTCAGATTGGGGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGCTAATGATTTGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTTAACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAGTGGTCTCTCCAACAGCTTAACACTAGTGGGGAAATGGCATGTGATCCTTTGATAGACCAGAAAATGCATACAACAACTACTCTTTCCTACTTGGTTGATGTAAAGCCGAAGATGTTGTTGCCGGTTCAGCTGGTTGAGGGTAGACTCTGCAAGGAGATCAAAATAAACCTAGCTTGCATCCGGGAAGAAGCACTGAAAATGACTCGCGAAACTCTTCTTACTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

277

Amino Acids

30.95

Weight (kDa)

4.74

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 105 - 253 2.6e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 748
AccII CGCG 3 cut(s) 179, 479, 813
AciI CCGC 4 cut(s) 57, 143, 177, 323
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 288, 336, 412
AgsI TTSAA 6 cut(s) 10, 72, 138, 475, 578, 590
AhdI GACNNNNNGTC 1 cut(s) 389
AhlI ACTAGT 1 cut(s) 629
AluBI AGCT 4 cut(s) 169, 622, 736, 779
AluI AGCT 4 cut(s) 169, 622, 736, 779
Alw26I GTCTC 4 cut(s) 124, 355, 545, 615
AlwI GGATC 1 cut(s) 644
AoxI GGCC 3 cut(s) 140, 279, 366
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 1 cut(s) 470
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
Asp700I GAANNNNTTC 2 cut(s) 594, 819
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 2 cut(s) 381, 788
AsuHPI GGTGA 1 cut(s) 593
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BcnI CCSGG 2 cut(s) 381, 788
BcoDI GTCTC 4 cut(s) 124, 355, 545, 615
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 4 cut(s) 39, 512, 630, 776
BfoI RGCGCY 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 60, 143, 152, 323
BlsI GCNGC 4 cut(s) 61, 144, 153, 324
Bme1390I CCNGG 2 cut(s) 381, 788
BmeRI GACNNNNNGTC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 35, 280, 321
BmrFI CCNGG 2 cut(s) 381, 788
BmsI GCATC 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 381, 788
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 545, 615
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 336, 412
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 2 cut(s) 369, 397
Bse3DI GCAATG 1 cut(s) 519
BseGI GGATG 2 cut(s) 199, 783
BseLI CCNNNNNNNGG 3 cut(s) 288, 336, 412
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 369, 397
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 3 cut(s) 179, 479, 813
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 3 cut(s) 142, 281, 368
BshNI GGYRCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 302
BsiSI CCGG 5 cut(s) 129, 289, 381, 728, 787
BslI CCNNNNNNNGG 3 cut(s) 288, 336, 412
BsmAI GTCTC 4 cut(s) 124, 355, 545, 615
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 142, 281, 368
Bso31I GGTCTC 2 cut(s) 545, 615
Bsp143I GATC 3 cut(s) 299, 649, 762
Bsp68I TCGCGA 1 cut(s) 813
BspACI CCGC 4 cut(s) 57, 143, 177, 323
BspANI GGCC 3 cut(s) 142, 281, 368
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 3 cut(s) 179, 479, 813
BspLI GGNNCC 3 cut(s) 35, 280, 321
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 2 cut(s) 545, 615
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 2 cut(s) 369, 397
BssAI RCCGGY 1 cut(s) 727
BssMI GATC 3 cut(s) 299, 649, 762
BssNI GRCGYC 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 28, 334
Bst6I CTCTTC 2 cut(s) 82, 825
BstACI GRCGYC 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 327, 781
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 199, 783
BstFNI CGCG 3 cut(s) 179, 479, 813
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 302, 652, 765
BstMAI GTCTC 4 cut(s) 124, 355, 545, 615
BstMBI GATC 3 cut(s) 299, 649, 762
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 5 cut(s) 65, 148, 151, 326, 733
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 2 cut(s) 379, 786
BstUI CGCG 3 cut(s) 179, 479, 813
BstV1I GCAGC 2 cut(s) 46, 138
BstV2I GAAGAC 1 cut(s) 278
BsuRI GGCC 3 cut(s) 142, 281, 368
BtsCI GGATG 2 cut(s) 199, 783
BtsIMutI CAGTG 2 cut(s) 24, 797
BtuMI TCGCGA 1 cut(s) 813
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 327, 781
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 571, 645
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 321
DpnI GATC 3 cut(s) 301, 651, 764
DpnII GATC 3 cut(s) 299, 649, 762
DriI GACNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 82, 825
Eam1105I GACNNNNNGTC 1 cut(s) 389
EarI CTCTTC 2 cut(s) 82, 825
Eco31I GGTCTC 2 cut(s) 545, 615
Eco57I CTGAAG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 675
EgeI GGCGCC 1 cut(s) 321
EheI GGCGCC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 2 cut(s) 574, 648
FaiI YATR 5 cut(s) 242, 254, 572, 646, 675
FatI CATG 2 cut(s) 570, 644
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 60, 143, 152, 323
FokI GGATG 2 cut(s) 206, 770
Fsp4HI GCNGC 4 cut(s) 60, 143, 152, 323
FspBI CTAG 4 cut(s) 39, 512, 630, 776
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 60, 143, 152, 323
GsuI CTGGAG 1 cut(s) 389
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 3 cut(s) 142, 281, 368
HapII CCGG 5 cut(s) 129, 289, 381, 728, 787
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 2 cut(s) 574, 648
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 8 cut(s) 173, 206, 212, 294, 384, 505, 750, 808
HpaII CCGG 5 cut(s) 129, 289, 381, 728, 787
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 2 cut(s) 348, 749
Hpy188III TCNNGA 5 cut(s) 160, 337, 406, 512, 812
Hpy8I GTNNAC 2 cut(s) 348, 749
HpyAV CCTTC 2 cut(s) 54, 572
HpyCH4III ACNGT 2 cut(s) 28, 334
HpyCH4V TGCA 4 cut(s) 154, 673, 756, 783
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 148, 151, 326, 733
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 2 cut(s) 574, 648
HspAI GCGC 1 cut(s) 320
KasI GGCGCC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 299, 649, 762
LmnI GCTCC 4 cut(s) 39, 67, 408, 445
Lsp1109I GCAGC 2 cut(s) 46, 138
LweI GCATC 1 cut(s) 792
MaeI CTAG 4 cut(s) 39, 512, 630, 776
MaeIII GTNAC 1 cut(s) 581
MalI GATC 3 cut(s) 301, 651, 764
MbiI CCGCTC 1 cut(s) 325
MboI GATC 3 cut(s) 299, 649, 762
MboII GAAGA 6 cut(s) 69, 126, 283, 727, 803, 812
MluCI AATT 2 cut(s) 124, 470
Mly113I GGCGCC 1 cut(s) 320
MlyI GAGTC 4 cut(s) 167, 378, 744, 802
MmeI TCCRAC 2 cut(s) 393, 640
MnlI CCTC 5 cut(s) 184, 310, 519, 593, 736
Mph1103I ATGCAT 1 cut(s) 675
MroXI GAANNNNTTC 2 cut(s) 594, 819
MseI TTAA 2 cut(s) 567, 624
MspA1I CMGCKG 2 cut(s) 59, 736
MspI CCGG 5 cut(s) 129, 289, 381, 728, 787
MspR9I CCNGG 2 cut(s) 381, 788
MvnI CGCG 3 cut(s) 179, 479, 813
MwoI GCNNNNNNNGC 5 cut(s) 65, 148, 151, 326, 733
NarI GGCGCC 1 cut(s) 320
NciI CCSGG 2 cut(s) 381, 788
NdeII GATC 3 cut(s) 299, 649, 762
NlaIII CATG 2 cut(s) 574, 648
NlaIV GGNNCC 3 cut(s) 35, 280, 321
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 581
NruI TCGCGA 1 cut(s) 813
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 648
PaqCI CACCTGC 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 594, 819
PfeI GAWTC 4 cut(s) 206, 212, 294, 505
PflMI CCANNNNNTGG 1 cut(s) 336
PfoI TCCNGGA 2 cut(s) 379, 786
PkrI GCNGC 4 cut(s) 61, 144, 153, 324
Ple19I CGATCG 1 cut(s) 302
PleI GAGTC 4 cut(s) 167, 378, 744, 802
PluTI GGCGCC 1 cut(s) 323
PpsI GAGTC 4 cut(s) 167, 378, 744, 802
PspN4I GGNNCC 3 cut(s) 35, 280, 321
PspPI GGNCC 1 cut(s) 279
PvuI CGATCG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 736
RruI TCGCGA 1 cut(s) 813
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 567, 624
SatI GCNGC 4 cut(s) 60, 143, 152, 323
Sau3AI GATC 3 cut(s) 299, 649, 762
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 4 cut(s) 167, 378, 744, 802
ScrFI CCNGG 2 cut(s) 381, 788
SetI ASST 7 cut(s) 150, 171, 583, 624, 738, 777, 781
SfaNI GCATC 1 cut(s) 792
SfoI GGCGCC 1 cut(s) 321
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 2 cut(s) 124, 470
SsiI CCGC 4 cut(s) 57, 143, 177, 323
SspDI GGCGCC 1 cut(s) 319
SspMI CTAG 4 cut(s) 39, 512, 630, 776
StyD4I CCNGG 2 cut(s) 379, 786
TaaI ACNGT 2 cut(s) 28, 334
TaqI TCGA 3 cut(s) 161, 171, 598
TasI AATT 2 cut(s) 124, 470
TauI GCSGC 2 cut(s) 145, 325
TfiI GAWTC 4 cut(s) 206, 212, 294, 505
Tru1I TTAA 2 cut(s) 567, 624
Tru9I TTAA 2 cut(s) 567, 624
TscAI CASTG 2 cut(s) 31, 804
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 59, 151
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 1 cut(s) 364
TspGWI ACGGA 2 cut(s) 106, 365
TspRI CASTG 2 cut(s) 31, 804
Van91I CCANNNNNTGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 470
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 748
XmnI GAANNNNTTC 2 cut(s) 594, 819
XspI CTAG 4 cut(s) 39, 512, 630, 776
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.