AT4G04630

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003172
Physical Location & Seq
Reverse (-)
2331677 .. 2332814
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04630.1

Sequence Viewer

Length: 507 bp
ATGGATTCATTAGGATCAAGAAGAAGGACACATAATAGCCGTAGGGTTCCTTCAATGGGAATAGAAGGGGACGAAGAGTTTCAAGAAGAAGATGTGTGGTCAGTTTTACGAGAAGGAGAAACTTCAAGTCCTGAAATGAAAATACCCAAAAGTCATTTCTCTTCCTCATCATCTTCTTCCTCTTCACCATGGAACATTCGTAGAAGCAAGGAGGTCTCAGGAGTGAAACAATCATCAGCACCTATGAATGTCCCTGATTGGTCCAAGGTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTCTCATGCTGCTGACGATGATGATGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAGCTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACACTTAAAGGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGTCAAAAACTGGTTTCTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

168

Amino Acids

18.76

Weight (kDa)

6.6

Isoelectric Point (pI)

75.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 27 - 168 9.7e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 54, 83, 126
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 177, 287
AsuNHI GCTAGC 1 cut(s) 388
AvaII GGWCC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 389
BglII AGATCT 2 cut(s) 402, 454
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 48, 360
BmtI GCTAGC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 188, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 188, 264
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 307
BslFI GGGAC 2 cut(s) 83, 236
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 83, 236
BsmI GAATGC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 14, 402, 454
Bsp19I CCATGG 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 48, 360
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 188, 264
BssMI GATC 3 cut(s) 14, 402, 454
BssT1I CCWWGG 2 cut(s) 188, 264
Bst6I CTCTTC 5 cut(s) 69, 166, 187, 412, 445
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 217, 458
BstDSI CCRYGG 1 cut(s) 188
BstKTI GATC 3 cut(s) 17, 405, 457
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 14, 402, 454
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 402, 454
BstXI CCANNNNNNTGG 1 cut(s) 372
BstYI RGATCY 2 cut(s) 402, 454
BtgI CCRYGG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 4 cut(s) 189, 317, 355, 368
CviJI RGCY 3 cut(s) 39, 303, 388
CviKI_1 RGCY 3 cut(s) 39, 303, 388
DdeI CTNAG 2 cut(s) 217, 458
DpnI GATC 3 cut(s) 16, 404, 456
DpnII GATC 3 cut(s) 14, 402, 454
Eam1104I CTCTTC 5 cut(s) 69, 166, 187, 412, 445
EarI CTCTTC 5 cut(s) 69, 166, 187, 412, 445
Eco130I CCWWGG 2 cut(s) 188, 264
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 188, 264
ErhI CCWWGG 2 cut(s) 188, 264
FaeI CATG 4 cut(s) 192, 320, 358, 371
FaiI YATR 8 cut(s) 33, 190, 245, 273, 318, 356, 369, 419
FaqI GGGAC 2 cut(s) 83, 236
FatI CATG 4 cut(s) 188, 316, 354, 367
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 389
GluI GCNGC 1 cut(s) 321
Hin1II CATG 4 cut(s) 192, 320, 358, 371
HinfI GANTC 2 cut(s) 5, 278
HphI GGTGA 2 cut(s) 177, 287
Hpy188III TCNNGA 4 cut(s) 18, 83, 131, 219
HpyAV CCTTC 6 cut(s) 18, 59, 60, 107, 288, 419
HpyCH4V TGCA 3 cut(s) 310, 354, 380
HpyF3I CTNAG 2 cut(s) 217, 458
Hsp92II CATG 4 cut(s) 192, 320, 358, 371
Kzo9I GATC 3 cut(s) 14, 402, 454
LpnPI CCDG 4 cut(s) 144, 204, 267, 477
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 16, 404, 456
MboI GATC 3 cut(s) 14, 402, 454
MflI RGATCY 2 cut(s) 402, 454
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 4 cut(s) 175, 190, 205, 372
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 315, 370
Mva1269I GAATGC 1 cut(s) 310
NcoI CCATGG 1 cut(s) 188
NdeII GATC 3 cut(s) 14, 402, 454
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 4 cut(s) 192, 320, 358, 371
NlaIV GGNNCC 2 cut(s) 48, 360
NmuCI GTSAC 1 cut(s) 275
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 48, 360
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 2 cut(s) 402, 454
RseI CAYNNNNRTG 2 cut(s) 315, 370
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 3 cut(s) 14, 402, 454
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 272
SetI ASST 4 cut(s) 216, 244, 270, 390
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 315, 370
SspMI CTAG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 188, 264
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 152, 260, 351, 384
VpaK11BI GGWCC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.