Prupe.4G214900_v2.0.a1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0003172
Physical Location & Seq
Forward (+)
13436357 .. 13439356
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G214900.7

Sequence Viewer

Length: 687 bp
ATGTTACAGATACCCCTTTGGAATCTTGGGAAAGTTGTGGTGCCTGGCAGTTCTCAATCAGAGAAAGGTAGGCAATCACCAATGGAGAATAGGTATGGTCTAACAACGCAGGGCAGTGGAGTTTGGAGGGCCTTGAGAGATGGAGACTTTGAGGAAGAGGATGTTTGGGAGGTTCTAAAAGATAGGAACAGTTCTAGTAACAAAATGGTTGGTAGATCCAAGGAATCCTCTGTTTCTGTTCCAAGACACCTCCCAACTGCTTCAAGAATGATCCCAAAAGCTAGCAGTCACAATTATGGAAGTGGCAGTAGCTGTAGCAGCAGCAACACCATCACTCATGAAGCCAAAATTGTGCAACAATCAGCACCTGTCAACATTCCTGATTGGTCAGAAGTATATGGTCAGAAATCAAAGAAGGCCCCCAAGAATGTTTCATGGCAGAATGATGATGCTGATGATGAAGAAGAAGTTGGGGATGATGATGGGGACAGTGATGATGATGATGAGGAGGAGGAAGACTATGACTCAAAGGTACCCCCTCATGAATTTATTGCTAGGAGGCTTGCAAGGAGCCAGATTTCTTCTTTTTCTGTTGTTGAAGGTGCTGGAAGGACCCTCAAAGGGAGGGACCTCAGCAAAGTGAGAAATGCTGTTTTAACAAAAACTGGTTTCCTTGAATCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

229

Amino Acids

25.17

Weight (kDa)

4.99

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 532
AccB1I GGYRCC 2 cut(s) 40, 532
AclWI GGATC 2 cut(s) 210, 265
AcsI RAATTY 1 cut(s) 545
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 3 cut(s) 264, 599, 677
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 2 cut(s) 281, 312
AluI AGCT 2 cut(s) 281, 312
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 210, 265
AlwNI CAGNNNCTG 2 cut(s) 312, 368
AoxI GGCC 2 cut(s) 129, 417
ApeKI GCWGC 2 cut(s) 318, 321
ApoI RAATTY 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 532
AspS9I GGNCC 4 cut(s) 129, 418, 612, 628
AsuHPI GGTGA 1 cut(s) 69
AsuNHI GCTAGC 1 cut(s) 281
AvaII GGWCC 2 cut(s) 612, 628
BanI GGYRCC 2 cut(s) 40, 532
BbsI GAAGAC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 2 cut(s) 330, 333
BccI CCATC 3 cut(s) 134, 338, 476
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 3 cut(s) 195, 282, 555
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 2 cut(s) 319, 322
BlsI GCNGC 2 cut(s) 320, 323
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 612, 628
BmgT120I GGNCC 4 cut(s) 129, 418, 612, 628
BmiI GGNNCC 6 cut(s) 42, 420, 534, 572, 614, 629
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 439
BmtI GCTAGC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 670
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 166, 481
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 646
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 521, 524
BseXI GCAGC 2 cut(s) 330, 333
BshFI GGCC 2 cut(s) 131, 419
BshNI GGYRCC 2 cut(s) 40, 532
BslFI GGGAC 2 cut(s) 500, 641
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 500, 641
BsnI GGCC 2 cut(s) 131, 419
Bsp143I GATC 2 cut(s) 215, 270
BspANI GGCC 2 cut(s) 131, 419
BspCNI CTCAG 1 cut(s) 645
BspHI TCATGA 2 cut(s) 337, 541
BspLI GGNNCC 6 cut(s) 42, 420, 534, 572, 614, 629
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 2 cut(s) 210, 265
BspT107I GGYRCC 2 cut(s) 40, 532
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 215, 270
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 191, 491
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 283, 564
BstDEI CTNAG 1 cut(s) 632
BstF5I GGATG 2 cut(s) 166, 481
BstKTI GATC 2 cut(s) 218, 273
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 215, 270
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 330, 333
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 2 cut(s) 131, 419
BtsCI GGATG 2 cut(s) 166, 481
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 496
Cac8I GCNNGC 2 cut(s) 283, 564
CaiI CAGNNNCTG 2 cut(s) 312, 368
CciI TCATGA 2 cut(s) 337, 541
Cfr13I GGNCC 4 cut(s) 129, 418, 612, 628
Csp6I GTAC 1 cut(s) 533
CviAII CATG 3 cut(s) 338, 435, 542
CviJI RGCY 7 cut(s) 131, 281, 312, 344, 419, 562, 573
CviKI_1 RGCY 7 cut(s) 131, 281, 312, 344, 419, 562, 573
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 1 cut(s) 632
DpnI GATC 2 cut(s) 217, 272
DpnII GATC 2 cut(s) 215, 270
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 612, 628
EcoO109I RGGNCCY 4 cut(s) 129, 418, 612, 628
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 341, 438, 545
FaiI YATR 8 cut(s) 96, 297, 339, 397, 399, 436, 522, 543
FaqI GGGAC 2 cut(s) 500, 641
FatI CATG 3 cut(s) 337, 434, 541
Fnu4HI GCNGC 2 cut(s) 319, 322
FokI GGATG 2 cut(s) 173, 488
Fsp4HI GCNGC 2 cut(s) 319, 322
FspBI CTAG 3 cut(s) 195, 282, 555
GluI GCNGC 2 cut(s) 319, 322
HaeIII GGCC 2 cut(s) 131, 419
Hin1II CATG 3 cut(s) 341, 438, 545
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 4 cut(s) 22, 224, 524, 677
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 61, 391, 405
Hpy188III TCNNGA 4 cut(s) 264, 338, 380, 542
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 409, 593, 603
HpyCH4III ACNGT 2 cut(s) 191, 491
HpyCH4V TGCA 2 cut(s) 355, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 632
Hsp92II CATG 3 cut(s) 341, 438, 545
KpnI GGTACC 1 cut(s) 536
Kzo9I GATC 2 cut(s) 215, 270
LmnI GCTCC 1 cut(s) 570
LpnPI CCDG 8 cut(s) 30, 57, 95, 381, 393, 587, 591, 651
Lsp1109I GCAGC 2 cut(s) 330, 333
LweI GCATC 1 cut(s) 439
MaeI CTAG 3 cut(s) 195, 282, 555
MaeIII GTNAC 3 cut(s) 3, 197, 287
MalI GATC 2 cut(s) 217, 272
MboI GATC 2 cut(s) 215, 270
MboII GAAGA 5 cut(s) 167, 473, 476, 527, 573
MflI RGATCY 1 cut(s) 215
MluCI AATT 3 cut(s) 292, 348, 545
MlyI GAGTC 1 cut(s) 518
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 2 cut(s) 215, 270
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 3 cut(s) 341, 438, 545
NlaIV GGNNCC 6 cut(s) 42, 420, 534, 572, 614, 629
NmuCI GTSAC 1 cut(s) 287
PagI TCATGA 2 cut(s) 337, 541
PfeI GAWTC 3 cut(s) 22, 224, 677
PkrI GCNGC 2 cut(s) 320, 323
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PpuMI RGGWCCY 2 cut(s) 612, 628
Psp5II RGGWCCY 2 cut(s) 612, 628
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 6 cut(s) 42, 420, 534, 572, 614, 629
PspPI GGNCC 4 cut(s) 129, 418, 612, 628
PspPPI RGGWCCY 2 cut(s) 612, 628
PstNI CAGNNNCTG 2 cut(s) 312, 368
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 2 cut(s) 319, 322
Sau3AI GATC 2 cut(s) 215, 270
Sau96I GGNCC 4 cut(s) 129, 418, 612, 628
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 45
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 313
SinI GGWCC 2 cut(s) 612, 628
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 3 cut(s) 292, 348, 545
SspMI CTAG 3 cut(s) 195, 282, 555
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 191, 491
TasI AATT 3 cut(s) 292, 348, 545
TfiI GAWTC 3 cut(s) 22, 224, 677
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TscAI CASTG 2 cut(s) 121, 496
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 318, 321
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 354, 423, 474, 558
TspRI CASTG 2 cut(s) 121, 496
VpaK11BI GGWCC 2 cut(s) 612, 628
XapI RAATTY 1 cut(s) 545
XspI CTAG 3 cut(s) 195, 282, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.