Rw5G025330

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003172
Physical Location & Seq
Forward (+)
36032412 .. 36033008
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025330.1

Sequence Viewer

Length: 597 bp
ATGGAGGATAGGTATCTATCAAGGCAGGGAAGTGGAGTTTGGAGGTCTTTGAGAGATGGAGATTTTGAGGAAGAAGATGTTTGGAATGTTTTAAGAGATAGAAAAACCTCAAACACCATGACTGGTAGATCCAAAGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACCGCTTCAAGGATGATACCAAGAGCTAGCAGCCACAATTATGGTAGTGGAAGTAGCTGTAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCTGTTCACATTCCCAACTGGTCAAAAGCATATGGCCAGGAATCAAGGAAGGGTTTCAAAAATAGTTCATGGCATAATGAGTGTGACGATACTGATCATGATGATGAAGACGGGGATCTTGACGATGAGGATGAAGAGGAGGAGGAGGATGACTACGATTCAAAGGAACCCCCACATGAATTTATTGCCAGGAGGCTTGCAAGAAGTCAGATTTCTTCTTTTTCAGTTTGTGAAGGTGCTGGGAGGACCCTAAAAGGGAGGGACCTCAGCAAAGTGAGGAACGCTGTTTTGATAAAAACTGGTTTCCTTGAATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

198

Amino Acids

22.39

Weight (kDa)

5.13

Isoelectric Point (pI)

66.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 21 - 196 5.9e-35 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 123, 399
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 177, 531
AgsI TTSAA 4 cut(s) 177, 334, 438, 587
AjnI CCWGG 2 cut(s) 312, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 2 cut(s) 194, 225
AluI AGCT 2 cut(s) 194, 225
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 123, 399
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 522, 538
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 522, 538
BalI TGGCCA 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 314, 466
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 314, 466
Bme18I GGWCC 2 cut(s) 522, 538
BmgT120I GGNCC 2 cut(s) 522, 538
BmiI GGNNCC 3 cut(s) 444, 524, 539
BmrFI CCNGG 2 cut(s) 314, 466
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 542
BsaBI GATNNNNATC 2 cut(s) 12, 369
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 531
Bse1I ACTGG 3 cut(s) 127, 299, 580
Bse8I GATNNNNATC 2 cut(s) 12, 369
BseBI CCWGG 2 cut(s) 314, 466
BseGI GGATG 3 cut(s) 186, 412, 430
BseJI GATNNNNATC 2 cut(s) 12, 369
BseLI CCNNNNNNNGG 2 cut(s) 177, 531
BseMII CTCAG 2 cut(s) 156, 556
BseNI ACTGG 3 cut(s) 127, 299, 580
BseRI GAGGAG 3 cut(s) 428, 431, 434
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 177, 531
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 128, 370, 391
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 155, 555
BspHI TCATGA 2 cut(s) 247, 373
BspLI GGNNCC 3 cut(s) 444, 524, 539
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 123, 399
BsrI ACTGG 3 cut(s) 127, 299, 580
BssMI GATC 3 cut(s) 128, 370, 391
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 314, 466
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 196, 474
BstDEI CTNAG 2 cut(s) 142, 542
BstF5I GGATG 3 cut(s) 186, 412, 430
BstKTI GATC 3 cut(s) 131, 373, 394
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 128, 370, 391
BstNI CCWGG 2 cut(s) 314, 466
BstSCI CCNGG 2 cut(s) 312, 464
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 2 cut(s) 128, 391
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 2 cut(s) 128, 391
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 3 cut(s) 186, 412, 430
Cac8I GCNNGC 2 cut(s) 196, 474
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 247, 373
Cfr13I GGNCC 2 cut(s) 522, 538
CseI GACGC 1 cut(s) 168
CviAII CATG 5 cut(s) 118, 248, 345, 374, 452
CviJI RGCY 6 cut(s) 194, 201, 225, 254, 312, 472
CviKI_1 RGCY 6 cut(s) 194, 201, 225, 254, 312, 472
DdeI CTNAG 2 cut(s) 142, 542
DpnI GATC 3 cut(s) 130, 372, 393
DpnII GATC 3 cut(s) 128, 370, 391
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 522, 538
EcoO109I RGGNCCY 2 cut(s) 522, 538
EcoRII CCWGG 2 cut(s) 312, 464
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 5 cut(s) 121, 251, 348, 377, 455
FaiI YATR 9 cut(s) 119, 210, 249, 307, 309, 346, 351, 375, 453
FaqI GGGAC 1 cut(s) 551
FatI CATG 5 cut(s) 117, 247, 344, 373, 451
FauNDI CATATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 3 cut(s) 193, 419, 437
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 199
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 5 cut(s) 121, 251, 348, 377, 455
HinfI GANTC 4 cut(s) 137, 317, 434, 587
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 156, 486
Hpy188III TCNNGA 3 cut(s) 248, 374, 395
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 319, 503
HpyCH4V TGCA 3 cut(s) 265, 275, 476
HpyF3I CTNAG 2 cut(s) 142, 542
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 5 cut(s) 121, 251, 348, 377, 455
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 128, 370, 391
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 130, 372, 393
MboI GATC 3 cut(s) 128, 370, 391
MboII GAAGA 5 cut(s) 83, 86, 395, 422, 483
MflI RGATCY 2 cut(s) 128, 391
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 205, 258, 455
MluNI TGGCCA 1 cut(s) 312
Mox20I TGGCCA 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 207, 378
Msp20I TGGCCA 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 314, 466
MvaI CCWGG 2 cut(s) 314, 466
NdeI CATATG 1 cut(s) 307
NdeII GATC 3 cut(s) 128, 370, 391
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 5 cut(s) 121, 251, 348, 377, 455
NlaIV GGNNCC 3 cut(s) 444, 524, 539
NmuCI GTSAC 1 cut(s) 359
PagI TCATGA 2 cut(s) 247, 373
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 4 cut(s) 137, 317, 434, 587
PkrI GCNGC 1 cut(s) 200
PpuMI RGGWCCY 2 cut(s) 522, 538
Psp5II RGGWCCY 2 cut(s) 522, 538
Psp6I CCWGG 2 cut(s) 312, 464
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 312, 464
PspN4I GGNNCC 3 cut(s) 444, 524, 539
PspPI GGNCC 2 cut(s) 522, 538
PspPPI RGGWCCY 2 cut(s) 522, 538
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 128, 391
RseI CAYNNNNRTG 2 cut(s) 207, 378
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 3 cut(s) 128, 370, 391
Sau96I GGNCC 2 cut(s) 522, 538
ScrFI CCNGG 2 cut(s) 314, 466
SetI ASST 8 cut(s) 14, 47, 110, 196, 227, 280, 514, 543
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 2 cut(s) 522, 538
SmiMI CAYNNNNRTG 2 cut(s) 207, 378
Sse9I AATT 3 cut(s) 205, 258, 455
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 312, 464
TasI AATT 3 cut(s) 205, 258, 455
TfiI GAWTC 4 cut(s) 137, 317, 434, 587
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 5 cut(s) 264, 333, 396, 423, 468
VpaK11BI GGWCC 2 cut(s) 522, 538
XapI RAATTY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.