AT4G21970

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003172
Physical Location & Seq
Forward (+)
11653234 .. 11654462
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21970.1

Sequence Viewer

Length: 474 bp
ATGGAAGGGGGAGAAGAGTTTCAAGAAGAAGAAGTGTGGTCAGTTTTGAGAGAAAGTGAAACTCAAGGTCCTGAAATGAAAATGTCCAAAAGTAACAATCTCTTCTCAGCCTCTTCCTCATCTTCTGCGAGGTACATTCCTAAAGGCAACGAGGTCTCTGGAGGGGCAAAACAGTCATCTGCTCCAATGAATATTCCTGACTGGTCCAAGGTTTATGGGTATTCAAAGAAGAACACAAGCAGCCACTTGCATTCATGGGCCATTGACGATGATGATGAAGGCTCAATGGTTCCTCCACATGAGTTAGTAGCAAAAAGACTTGCAAGAACGCAGATCTCATCATTCTCTATGTGCGAAGGAATCGGAAGAACGCTCAAAGGAAGAGATCTCAGCAAAACAAGAAACGCTGTCTTAACAAGAACTGGTTTCTTGGAATCGAATATCACATCTTCATCAACAACATCACCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

157

Amino Acids

17.17

Weight (kDa)

5.94

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 8 - 145 1.2e-38 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 23, 225
Alw26I GTCTC 1 cut(s) 160
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 3 cut(s) 68, 204, 258
AsuHPI GGTGA 1 cut(s) 456
AvaII GGWCC 2 cut(s) 68, 204
BbvI GCAGC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 160
BglII AGATCT 2 cut(s) 333, 385
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme18I GGWCC 2 cut(s) 68, 204
BmgT120I GGNCC 3 cut(s) 68, 204, 258
BmiI GGNNCC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 206, 427
BseDI CCNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 120, 403
BseNI ACTGG 2 cut(s) 206, 427
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 333, 385
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 119, 402
BspLI GGNNCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 2 cut(s) 206, 427
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 333, 385
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 4 cut(s) 9, 107, 118, 376
BstDEI CTNAG 2 cut(s) 106, 389
BstKTI GATC 2 cut(s) 336, 388
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 333, 385
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 333, 385
BstYI RGATCY 2 cut(s) 333, 385
BsuRI GGCC 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 68, 204, 258
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 255, 299
CviJI RGCY 4 cut(s) 110, 243, 260, 282
CviKI_1 RGCY 4 cut(s) 110, 243, 260, 282
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 106, 389
DpnI GATC 2 cut(s) 335, 387
DpnII GATC 2 cut(s) 333, 385
Eam1104I CTCTTC 4 cut(s) 9, 107, 118, 376
EarI CTCTTC 4 cut(s) 9, 107, 118, 376
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 68, 204
EcoO109I RGGNCCY 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 258, 302
FaiI YATR 5 cut(s) 216, 256, 300, 350, 472
FatI CATG 2 cut(s) 254, 298
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 260
Hin1II CATG 2 cut(s) 258, 302
HinfI GANTC 2 cut(s) 360, 434
HphI GGTGA 1 cut(s) 456
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 4 cut(s) 23, 71, 159, 197
HpyAV CCTTC 2 cut(s) 272, 350
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 250, 323
HpyF3I CTNAG 2 cut(s) 106, 389
Hsp92II CATG 2 cut(s) 258, 302
Kzo9I GATC 2 cut(s) 333, 385
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 84, 144, 187, 210, 408
Lsp1109I GCAGC 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 335, 387
MboI GATC 2 cut(s) 333, 385
MflI RGATCY 2 cut(s) 333, 385
MnlI CCTC 6 cut(s) 121, 123, 127, 145, 155, 303
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 250
NdeII GATC 2 cut(s) 333, 385
NlaIII CATG 2 cut(s) 258, 302
NlaIV GGNNCC 1 cut(s) 291
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 360, 434
PkrI GCNGC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 3 cut(s) 68, 204, 258
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 2 cut(s) 333, 385
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 333, 385
Sau96I GGNCC 3 cut(s) 68, 204, 258
SetI ASST 4 cut(s) 70, 134, 156, 213
SinI GGWCC 2 cut(s) 68, 204
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SspI AATATT 1 cut(s) 193
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 437
TfiI GAWTC 2 cut(s) 360, 434
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 5 cut(s) 92, 203, 243, 291, 441
VpaK11BI GGWCC 2 cut(s) 68, 204
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.