MD11G1216500.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003172
Physical Location & Seq
Reverse (-)
31600149 .. 31601740
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1216500.v1.1.491

Sequence Viewer

Length: 624 bp
ATGGAGAATAGGTATGGCCTAATAAGGCAGGGCAGTGGAGTTTGGAGGGCCTTGAGAGATGGAGACTTTGAGGAAGATGATGTTTGGGAGGTTCTAAAAGATAGAAACAATACTTGTGGTAAAAATATGGCTAACGGATCCAAAAATTCCCATGTTTCTATTCTAAGGCACCTCCCAACTGCCTCAAGAATGATTCCGAAACCCAGCAGCCACAATTACGGAATTGGCAGCAGCAACACAACCAACCATGAAGCCAAATTTTTGCAGCAATCAGCACCTGTCAACATTCCTGATTGGTCCAAGGCTTACGGTCAGAAACCAAACAAGGCCTCCAAGAATGTTTCTTGGCGGAAATATGAGCGCGATGGCGATGGTGATGAAGGCGGGGATGATGGCGGCAGAGATAGCGGTGATGATTATGAGGTGGTGGTAGAGGAGGAGGAGGAGGAGGAGGAGTATAATTCGAAGGTACCCCCTCATGAGTTTATTGCTAGGAGACTTGCAAGGAGTCAGATATCTTCTTTTTCTGTTTTTGAAGGGGCAGGGAGGACCCTCAAAGGCAGGGATCTTAGCAAAGTGAGGAATGCTATTTTGATAAAAACTGGTTTCCTTGAGTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

208

Amino Acids

23.22

Weight (kDa)

5.81

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 22 - 205 1.4e-36 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 469
AccB1I GGYRCC 2 cut(s) 168, 469
AccII CGCG 1 cut(s) 363
AciI CCGC 4 cut(s) 349, 384, 396, 408
AclWI GGATC 3 cut(s) 132, 145, 573
AcsI RAATTY 2 cut(s) 145, 257
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 57, 490
AlwI GGATC 3 cut(s) 132, 145, 573
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 3 cut(s) 16, 48, 327
ApeKI GCWGC 4 cut(s) 207, 228, 231, 265
ApoI RAATTY 2 cut(s) 145, 257
Asp718I GGTACC 1 cut(s) 469
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 48, 297, 549
AsuHPI GGTGA 2 cut(s) 386, 422
AsuII TTCGAA 1 cut(s) 464
AvaII GGWCC 2 cut(s) 297, 549
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 2 cut(s) 168, 469
BbvI GCAGC 4 cut(s) 219, 240, 243, 277
BccI CCATC 4 cut(s) 53, 359, 365, 386
BcoDI GTCTC 2 cut(s) 57, 490
BfaI CTAG 1 cut(s) 492
BisI GCNGC 5 cut(s) 208, 229, 232, 266, 397
BlsI GCNGC 5 cut(s) 209, 230, 233, 267, 398
Bme18I GGWCC 2 cut(s) 297, 549
BmgT120I GGNCC 3 cut(s) 48, 297, 549
BmiI GGNNCC 4 cut(s) 139, 170, 471, 551
Bpu14I TTCGAA 1 cut(s) 464
BpuEI CTTGAG 2 cut(s) 73, 169
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 5 cut(s) 26, 314, 344, 440, 470
Bse1I ACTGG 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 394
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 7 cut(s) 449, 452, 455, 458, 461, 464, 467
BseXI GCAGC 4 cut(s) 219, 240, 243, 277
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 18, 50, 329
BshNI GGYRCC 2 cut(s) 168, 469
BsmAI GTCTC 2 cut(s) 57, 490
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 3 cut(s) 18, 50, 329
Bsp119I TTCGAA 1 cut(s) 464
Bsp143I GATC 2 cut(s) 137, 565
BspACI CCGC 4 cut(s) 349, 384, 396, 408
BspANI GGCC 3 cut(s) 18, 50, 329
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 139, 170, 471, 551
BspPI GGATC 3 cut(s) 132, 145, 573
BspT104I TTCGAA 1 cut(s) 464
BspT107I GGYRCC 2 cut(s) 168, 469
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 137, 565
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 164, 569
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 2 cut(s) 140, 568
BstMAI GTCTC 2 cut(s) 57, 490
BstMBI GATC 2 cut(s) 137, 565
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 219, 240, 243, 277
BstX2I RGATCY 2 cut(s) 137, 565
BstYI RGATCY 2 cut(s) 137, 565
BsuRI GGCC 3 cut(s) 18, 50, 329
BtgZI GCGATG 2 cut(s) 378, 384
BtsCI GGATG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 48, 297, 549
Csp6I GTAC 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 3 cut(s) 152, 248, 479
CviJI RGCY 7 cut(s) 18, 50, 131, 210, 254, 305, 329
CviKI_1 RGCY 7 cut(s) 18, 50, 131, 210, 254, 305, 329
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 2 cut(s) 164, 569
DpnI GATC 2 cut(s) 139, 567
DpnII GATC 2 cut(s) 137, 565
EciI GGCGGA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 329
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 297, 549
EcoO109I RGGNCCY 2 cut(s) 48, 549
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 155, 251, 482
FaiI YATR 8 cut(s) 15, 128, 153, 249, 357, 420, 459, 480
FatI CATG 3 cut(s) 151, 247, 478
FauI CCCGC 1 cut(s) 377
Fnu4HI GCNGC 5 cut(s) 208, 229, 232, 266, 397
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 5 cut(s) 208, 229, 232, 266, 397
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 208, 229, 232, 266, 397
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 3 cut(s) 18, 50, 329
HhaI GCGC 1 cut(s) 363
Hin1II CATG 3 cut(s) 155, 251, 482
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 193, 508, 614
HphI GGTGA 2 cut(s) 386, 422
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 198, 315, 513
Hpy188III TCNNGA 3 cut(s) 186, 290, 479
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 374, 460, 530
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 265, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 2 cut(s) 164, 569
Hsp92II CATG 3 cut(s) 155, 251, 482
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 473
Kzo9I GATC 2 cut(s) 137, 565
LpnPI CCDG 7 cut(s) 14, 217, 291, 303, 528, 547, 588
Lsp1109I GCAGC 4 cut(s) 219, 240, 243, 277
MaeI CTAG 1 cut(s) 492
MalI GATC 2 cut(s) 139, 567
MboI GATC 2 cut(s) 137, 565
MboII GAAGA 2 cut(s) 86, 510
MflI RGATCY 2 cut(s) 137, 565
MluCI AATT 5 cut(s) 145, 214, 222, 257, 460
MlyI GAGTC 2 cut(s) 517, 623
Mva1269I GAATGC 1 cut(s) 589
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeII GATC 2 cut(s) 137, 565
NlaIII CATG 3 cut(s) 155, 251, 482
NlaIV GGNNCC 4 cut(s) 139, 170, 471, 551
NspV TTCGAA 1 cut(s) 464
PagI TCATGA 1 cut(s) 478
PceI AGGCCT 1 cut(s) 329
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 5 cut(s) 209, 230, 233, 267, 398
PleI GAGTC 2 cut(s) 516, 622
PpsI GAGTC 2 cut(s) 516, 622
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 139, 170, 471, 551
PspPI GGNCC 3 cut(s) 48, 297, 549
PspPPI RGGWCCY 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 137, 565
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SatI GCNGC 5 cut(s) 208, 229, 232, 266, 397
Sau3AI GATC 2 cut(s) 137, 565
Sau96I GGNCC 3 cut(s) 48, 297, 549
SchI GAGTC 2 cut(s) 517, 623
SetI ASST 6 cut(s) 14, 93, 174, 280, 426, 471
SfuI TTCGAA 1 cut(s) 464
SinI GGWCC 2 cut(s) 297, 549
SmlI CTYRAG 3 cut(s) 52, 184, 611
SmoI CTYRAG 3 cut(s) 52, 184, 611
Sse9I AATT 5 cut(s) 145, 214, 222, 257, 460
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 4 cut(s) 349, 384, 396, 408
SspMI CTAG 1 cut(s) 492
StuI AGGCCT 1 cut(s) 329
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 464
TasI AATT 5 cut(s) 145, 214, 222, 257, 460
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 40
TseI GCWGC 4 cut(s) 207, 228, 231, 265
TspDTI ATGAA 2 cut(s) 264, 393
TspGWI ACGGA 2 cut(s) 150, 234
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 297, 549
XapI RAATTY 2 cut(s) 145, 257
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.