Rh5DG282400

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003172
Physical Location & Seq
Forward (+)
34735831 .. 34738565
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG282400.1

Sequence Viewer

Length: 681 bp
ATGTTGCAGATACCCCTTTGGAATCTTGGGAAAGTTGTGGTGCTTGGTGGTACTTCTCAATCAGATAAAGGTAGGCAACCTCCAATGGAGGACAGGTATCTATCAAGGCAGGGAAGTGGAGTTTGGAGGTCTTTGAGAGATGGAGATTTTGAGGAAGAAGATGTTTGGAATGTTTTAAGAGAGAGAAAAACTTCAAACACCATGACTGGTAGATCCAAAGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACCGCTTCAAGGATGATACCAAGAGCTAGCAGCCACAATTATGGTAGTGGAAGTAGCTGTAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCTGTTCACATTCCCAACTGGTCAAAAGCATATGGCCAGGAATCAAAGAAGGGTTTCAAAAATAGTTCATGGCATAATGAGTGTGACGATGCTGATCATGATGATGAAGACGGGGATCTTGACGATGAGGATGAAGAGGAGGAGGAGGATGACTACGATTCAAAGGAACCCCCACATGAATTTATTGCCAGGAGGCTTGCAAGAAGTCAGATTTCTTCTTTTTCAGTTTGTGAAGGTGCTGGGAGGACCCTAAAAGGGAGGGACCTCAGCAAAGTGAGGAACGCTGTTTTGATAAAAACTGGTTTCCTTGAATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

5.35

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 49 - 224 1.5e-34 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 207, 483
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 261, 615
AgsI TTSAA 5 cut(s) 195, 261, 418, 522, 671
AjnI CCWGG 2 cut(s) 396, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 2 cut(s) 278, 309
AluI AGCT 2 cut(s) 278, 309
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 207, 483
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 2 cut(s) 190, 413
AspS9I GGNCC 2 cut(s) 606, 622
AsuNHI GCTAGC 1 cut(s) 278
AvaII GGWCC 2 cut(s) 606, 622
BalI TGGCCA 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 294
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 398, 550
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 310
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 398, 550
Bme18I GGWCC 2 cut(s) 606, 622
BmgT120I GGNCC 2 cut(s) 606, 622
BmiI GGNNCC 3 cut(s) 528, 608, 623
BmrFI CCNGG 2 cut(s) 398, 550
BmsI GCATC 1 cut(s) 439
BmtI GCTAGC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 615
Bse1I ACTGG 3 cut(s) 211, 383, 664
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 2 cut(s) 398, 550
BseGI GGATG 3 cut(s) 270, 496, 514
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 261, 615
BseMII CTCAG 2 cut(s) 240, 640
BseNI ACTGG 3 cut(s) 211, 383, 664
BseRI GAGGAG 3 cut(s) 512, 515, 518
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 396
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 261, 615
BsmAI GTCTC 1 cut(s) 235
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 212, 454, 475
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 239, 639
BspHI TCATGA 2 cut(s) 331, 457
BspLI GGNNCC 3 cut(s) 528, 608, 623
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 207, 483
BsrI ACTGG 3 cut(s) 211, 383, 664
BssMI GATC 3 cut(s) 212, 454, 475
BssNI GRCGYC 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 398, 550
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 280, 558
BstDEI CTNAG 2 cut(s) 226, 626
BstF5I GGATG 3 cut(s) 270, 496, 514
BstKTI GATC 3 cut(s) 215, 457, 478
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 212, 454, 475
BstNI CCWGG 2 cut(s) 398, 550
BstSCI CCNGG 2 cut(s) 396, 548
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 212, 475
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 2 cut(s) 212, 475
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 3 cut(s) 270, 496, 514
Cac8I GCNNGC 2 cut(s) 280, 558
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 2 cut(s) 331, 457
Cfr13I GGNCC 2 cut(s) 606, 622
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 51
CviAII CATG 5 cut(s) 202, 332, 429, 458, 536
CviJI RGCY 6 cut(s) 278, 285, 309, 338, 396, 556
CviKI_1 RGCY 6 cut(s) 278, 285, 309, 338, 396, 556
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 226, 626
DpnI GATC 3 cut(s) 214, 456, 477
DpnII GATC 3 cut(s) 212, 454, 475
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 606, 622
EcoO109I RGGNCCY 2 cut(s) 606, 622
EcoRII CCWGG 2 cut(s) 396, 548
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 5 cut(s) 205, 335, 432, 461, 539
FaiI YATR 9 cut(s) 203, 294, 333, 391, 393, 430, 435, 459, 537
FaqI GGGAC 1 cut(s) 635
FatI CATG 5 cut(s) 201, 331, 428, 457, 535
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 3 cut(s) 277, 503, 521
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 283
GsaI CCCAGC 1 cut(s) 603
HaeIII GGCC 1 cut(s) 396
HgaI GACGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 5 cut(s) 205, 335, 432, 461, 539
HinfI GANTC 5 cut(s) 22, 221, 401, 518, 671
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 64, 240, 570
Hpy188III TCNNGA 3 cut(s) 332, 458, 479
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 403, 587
HpyCH4V TGCA 4 cut(s) 7, 349, 359, 560
HpyF3I CTNAG 2 cut(s) 226, 626
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 5 cut(s) 205, 335, 432, 461, 539
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 212, 454, 475
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 443
MalI GATC 3 cut(s) 214, 456, 477
MboI GATC 3 cut(s) 212, 454, 475
MboII GAAGA 5 cut(s) 167, 170, 479, 506, 567
MflI RGATCY 2 cut(s) 212, 475
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 289, 342, 539
MluNI TGGCCA 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 396
MroXI GAANNNNTTC 2 cut(s) 190, 413
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 291, 462
Msp20I TGGCCA 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 398, 550
MvaI CCWGG 2 cut(s) 398, 550
NdeI CATATG 1 cut(s) 391
NdeII GATC 3 cut(s) 212, 454, 475
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 5 cut(s) 205, 335, 432, 461, 539
NlaIV GGNNCC 3 cut(s) 528, 608, 623
NmuCI GTSAC 1 cut(s) 443
PagI TCATGA 2 cut(s) 331, 457
PdmI GAANNNNTTC 2 cut(s) 190, 413
PfeI GAWTC 5 cut(s) 22, 221, 401, 518, 671
PkrI GCNGC 1 cut(s) 284
PpuMI RGGWCCY 2 cut(s) 606, 622
Psp5II RGGWCCY 2 cut(s) 606, 622
Psp6I CCWGG 2 cut(s) 396, 548
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 2 cut(s) 396, 548
PspN4I GGNNCC 3 cut(s) 528, 608, 623
PspPI GGNCC 2 cut(s) 606, 622
PspPPI RGGWCCY 2 cut(s) 606, 622
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 212, 475
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 2 cut(s) 291, 462
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 3 cut(s) 212, 454, 475
Sau96I GGNCC 2 cut(s) 606, 622
ScrFI CCNGG 2 cut(s) 398, 550
SetI ASST 9 cut(s) 73, 82, 98, 131, 280, 311, 364, 598, 627
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 2 cut(s) 606, 622
SmiMI CAYNNNNRTG 2 cut(s) 291, 462
Sse9I AATT 3 cut(s) 289, 342, 539
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 396, 548
TasI AATT 3 cut(s) 289, 342, 539
TfiI GAWTC 5 cut(s) 22, 221, 401, 518, 671
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 348, 417, 480, 507, 552
VpaK11BI GGWCC 2 cut(s) 606, 622
XapI RAATTY 1 cut(s) 539
XmnI GAANNNNTTC 2 cut(s) 190, 413
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.