FvH4_3g02030

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003172
Physical Location & Seq
Reverse (-)
1018898 .. 1020868
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02030.t2

Sequence Viewer

Length: 519 bp
ATGGCAGATTGGAACAGAATGCTGAGCAAAAGCAGTGGTTTTGGTGTTGGTGATTCAAGTAGTGAAGATTTTCAAGAAGAAGTGTGGGGTGTTACTCAGCAGGAAAGGAAGTACAACTTTACTCAGGAGTCTTGCTCCTCTAGTTCTTCTTCTTCTTCTGCAAGGAGCCTCTCCACAGCTCCAAGAACCATTGTAAAGGCATGTGACAACTCTTTAAGCACCCATGACTCCAATGTGGTACAGAGATCGGCTCCAATTAGCATTCCTGATTGGTCAAAAAATTATGGGAAAAATGAAGATAATCATGATGGGTATGATGTCCAATTCAATGGTGAAGATGATGATGCCAATGATAATGAAGATGAGATGGTGCCACCACATGAATGGTTGGCTAGAAAGCTGAGAAGAAGCCAGATCTCATGTTTCTCAGTTGTTGAAGGGAGGGGCAGGACACTTAAAGGAAGAGACTTGAGGAAAGTAAGGAATGGTGTTTGGAAACAAACTGGTTTCTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

173

Amino Acids

19.36

Weight (kDa)

5.29

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 37 - 172 1.5e-39 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AfaI GTAC 2 cut(s) 113, 240
AgsI TTSAA 4 cut(s) 57, 74, 328, 437
AluBI AGCT 2 cut(s) 179, 400
AluI AGCT 2 cut(s) 179, 400
Alw26I GTCTC 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 62, 344
BanI GGYRCC 1 cut(s) 370
BccI CCATC 2 cut(s) 302, 361
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 2 cut(s) 141, 393
BglII AGATCT 1 cut(s) 414
BlpI GCTNAGC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 167, 252, 372
BmsI GCATC 1 cut(s) 334
BplI GAGNNNNNCTC 4 cut(s) 119, 151, 235, 267
Bpu1102I GCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 508
BseMII CTCAG 5 cut(s) 14, 110, 137, 392, 441
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 459
BsmI GAATGC 2 cut(s) 24, 261
Bsp143I GATC 2 cut(s) 245, 414
Bsp1720I GCTNAGC 1 cut(s) 23
BspCNI CTCAG 5 cut(s) 15, 109, 136, 393, 440
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 167, 252, 372
BspT107I GGYRCC 1 cut(s) 370
BsrI ACTGG 1 cut(s) 508
BssMI GATC 2 cut(s) 245, 414
Bst6I CTCTTC 1 cut(s) 457
BstDEI CTNAG 5 cut(s) 23, 96, 123, 401, 427
BstKTI GATC 2 cut(s) 248, 417
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 2 cut(s) 245, 414
BstNSI RCATGY 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 2 cut(s) 329, 384
BstYI RGATCY 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
CciI TCATGA 1 cut(s) 304
Csp6I GTAC 2 cut(s) 112, 239
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 201, 224, 305, 380, 420
CviJI RGCY 6 cut(s) 168, 179, 251, 392, 400, 411
CviKI_1 RGCY 6 cut(s) 168, 179, 251, 392, 400, 411
CviQI GTAC 2 cut(s) 112, 239
DdeI CTNAG 5 cut(s) 23, 96, 123, 401, 427
DpnI GATC 2 cut(s) 247, 416
DpnII GATC 2 cut(s) 245, 414
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
FaeI CATG 5 cut(s) 204, 227, 308, 383, 423
FaiI YATR 7 cut(s) 202, 225, 285, 306, 315, 381, 421
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 5 cut(s) 200, 223, 304, 379, 419
FspBI CTAG 2 cut(s) 141, 393
Hin1II CATG 5 cut(s) 204, 227, 308, 383, 423
HinfI GANTC 3 cut(s) 53, 128, 227
HphI GGTGA 2 cut(s) 62, 344
Hpy188III TCNNGA 4 cut(s) 74, 125, 266, 305
HpyAV CCTTC 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 5 cut(s) 23, 96, 123, 401, 427
Hsp92II CATG 5 cut(s) 204, 227, 308, 383, 423
Kzo9I GATC 2 cut(s) 245, 414
LmnI GCTCC 4 cut(s) 140, 165, 184, 256
LpnPI CCDG 6 cut(s) 86, 110, 279, 425, 433, 489
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 141, 393
MaeIII GTNAC 2 cut(s) 91, 203
MalI GATC 2 cut(s) 247, 416
MboI GATC 2 cut(s) 245, 414
MflI RGATCY 1 cut(s) 414
MluCI AATT 3 cut(s) 255, 280, 323
MlyI GAGTC 2 cut(s) 137, 221
MnlI CCTC 4 cut(s) 148, 179, 435, 465
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 215, 456
MslI CAYNNNNRTG 1 cut(s) 382
Mva1269I GAATGC 2 cut(s) 24, 261
NdeII GATC 2 cut(s) 245, 414
NlaIII CATG 5 cut(s) 204, 227, 308, 383, 423
NlaIV GGNNCC 3 cut(s) 167, 252, 372
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 204
PagI TCATGA 1 cut(s) 304
PctI GAATGC 2 cut(s) 24, 261
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 53
PleI GAGTC 2 cut(s) 136, 221
PpsI GAGTC 2 cut(s) 136, 221
PspN4I GGNNCC 3 cut(s) 167, 252, 372
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 2 cut(s) 113, 240
RsaNI GTAC 2 cut(s) 112, 239
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 2 cut(s) 215, 456
Sau3AI GATC 2 cut(s) 245, 414
SchI GAGTC 2 cut(s) 137, 221
SetI ASST 2 cut(s) 181, 402
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 3 cut(s) 255, 280, 323
SspMI CTAG 2 cut(s) 141, 393
TasI AATT 3 cut(s) 255, 280, 323
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 215, 456
Tru9I TTAA 2 cut(s) 215, 456
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 309, 372, 396
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 141, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.