Rh5BG026300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003172
Physical Location & Seq
Reverse (-)
1853757 .. 1856218
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG026300.1

Sequence Viewer

Length: 552 bp
ATGGCAGATTGGAATGGTATGGTGAGCAAAAGCAATGGTTTTGGTGTTGGGGGTTCAAGTGAAGAGTTTGAAGAAGAAGAAGTGTGGGGTGTTGTGAAGGAAAGAAACTACTCCAACTCTACGCAGGAGTCTTACTCCTCTGGTTCTTCTTCTGCATGGCGCCTCTCTACAGCTGCAAGAACCATCCCAAGGGCTAATAACAACACTCCAAGTACCCATGAAGCCAAAGTGGTTCAGAAATCAGCTCCTCTCAACATCCCTGATTGGTCAAAGATCTATGGGAAAAGTTCTGGTGCTGCCAAGATTAATGGTTCATGGGTCAATAATGAAGATGATCATGATGGACATGTCAATTTCAATGGTGATGATGATGATGATGATGATGATATGGTGCCTCCACATGAATGGATGGCCAGAAAGCTAGCAAGAAGCCAGGTTTCATCTTTCTCAGTTTGTGAAGGGATTGGTAGGACACTCAAAGGAAGAGACCTCAGCAAAGGTTTGACCAAGAACCTCACCTGGGTTTACTGTTATGGGTCCATGCACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

183

Amino Acids

20.17

Weight (kDa)

5.2

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 32 - 166 6.3e-29 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 391
AcoI YGGCCR 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 189, 520
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 3 cut(s) 57, 71, 358
AjnI CCWGG 2 cut(s) 432, 518
AluBI AGCT 3 cut(s) 173, 245, 421
AluI AGCT 3 cut(s) 173, 245, 421
Alw26I GTCTC 1 cut(s) 480
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 2 cut(s) 173, 296
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 537
AsuHPI GGTGA 3 cut(s) 34, 374, 508
AsuNHI GCTAGC 1 cut(s) 421
AvaII GGWCC 1 cut(s) 537
BalI TGGCCA 1 cut(s) 413
BanI GGYRCC 2 cut(s) 159, 391
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 2 cut(s) 160, 283
BccI CCATC 3 cut(s) 191, 335, 403
BciT130I CCWGG 2 cut(s) 434, 520
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 174, 297
BlsI GCNGC 2 cut(s) 175, 298
Bme1390I CCNGG 2 cut(s) 434, 520
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 3 cut(s) 161, 393, 538
BmrFI CCNGG 2 cut(s) 434, 520
BmtI GCTAGC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 188, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 520
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 434, 520
BseDI CCNNGG 2 cut(s) 188, 519
BseGI GGATG 3 cut(s) 183, 255, 414
BseLI CCNNNNNNNGG 2 cut(s) 189, 520
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 462, 505
BseRI GAGGAG 2 cut(s) 127, 237
BseXI GCAGC 2 cut(s) 160, 283
BshFI GGCC 1 cut(s) 413
BshNI GGYRCC 2 cut(s) 159, 391
BslI CCNNNNNNNGG 2 cut(s) 189, 520
BsmAI GTCTC 1 cut(s) 480
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 273, 334
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 2 cut(s) 461, 504
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 161, 393, 538
BspOI GCTAGC 1 cut(s) 425
BspT107I GGYRCC 2 cut(s) 159, 391
BspTNI GGTCTC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 188, 519
BssMI GATC 2 cut(s) 273, 334
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 434, 520
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 2 cut(s) 57, 478
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 448, 491
BstF5I GGATG 3 cut(s) 183, 255, 414
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 276, 337
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 2 cut(s) 273, 334
BstNI CCWGG 2 cut(s) 434, 520
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 432, 518
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 160, 283
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 183, 255, 414
Cac8I GCNNGC 1 cut(s) 423
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 213
CviAII CATG 7 cut(s) 156, 218, 315, 338, 347, 401, 541
CviJI RGCY 7 cut(s) 173, 194, 224, 245, 413, 421, 432
CviKI_1 RGCY 7 cut(s) 173, 194, 224, 245, 413, 421, 432
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 448, 491
DinI GGCGCC 1 cut(s) 161
DpnI GATC 2 cut(s) 275, 336
DpnII GATC 2 cut(s) 273, 334
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 57, 478
EarI CTCTTC 2 cut(s) 57, 478
Eco130I CCWWGG 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 432, 518
EcoT14I CCWWGG 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 7 cut(s) 159, 221, 318, 341, 350, 404, 544
FatI CATG 7 cut(s) 155, 217, 314, 337, 346, 400, 540
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 174, 297
FokI GGATG 3 cut(s) 170, 242, 421
Fsp4HI GCNGC 2 cut(s) 174, 297
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 174, 297
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 413
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 7 cut(s) 159, 221, 318, 341, 350, 404, 544
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 128
HphI GGTGA 3 cut(s) 34, 374, 508
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 91, 452
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4V TGCA 3 cut(s) 155, 176, 544
HpyF3I CTNAG 2 cut(s) 448, 491
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 7 cut(s) 159, 221, 318, 341, 350, 404, 544
HspAI GCGC 1 cut(s) 160
KasI GGCGCC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 273, 334
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 110, 126, 273, 276, 419, 427, 446, 505, 532
Lsp1109I GCAGC 2 cut(s) 160, 283
MaeI CTAG 1 cut(s) 422
MalI GATC 2 cut(s) 275, 336
MboI GATC 2 cut(s) 273, 334
MboII GAAGA 8 cut(s) 74, 83, 86, 89, 138, 141, 341, 495
MflI RGATCY 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 1 cut(s) 352
MluNI TGGCCA 1 cut(s) 413
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 148, 173, 258, 405, 500, 524
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 434, 520
MvaI CCWGG 2 cut(s) 434, 520
NarI GGCGCC 1 cut(s) 160
NdeII GATC 2 cut(s) 273, 334
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 7 cut(s) 159, 221, 318, 341, 350, 404, 544
NlaIV GGNNCC 3 cut(s) 161, 393, 538
NspI RCATGY 1 cut(s) 350
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 346
PkrI GCNGC 2 cut(s) 175, 298
PleI GAGTC 1 cut(s) 136
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 432, 518
PspGI CCWGG 2 cut(s) 432, 518
PspN4I GGNNCC 3 cut(s) 161, 393, 538
PspPI GGNCC 1 cut(s) 537
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 174, 297
Sau3AI GATC 2 cut(s) 273, 334
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 434, 520
SetI ASST 8 cut(s) 175, 247, 423, 438, 492, 502, 516, 521
SfcI CTRYAG 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 403
Sse9I AATT 1 cut(s) 352
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 432, 518
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 530
TasI AATT 1 cut(s) 352
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 2 cut(s) 173, 296
TspDTI ATGAA 5 cut(s) 234, 303, 342, 417, 429
VpaK11BI GGWCC 1 cut(s) 537
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 1 cut(s) 350
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.