Rh5CG026300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003172
Physical Location & Seq
Reverse (-)
1630533 .. 1633112
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG026300.1

Sequence Viewer

Length: 642 bp
ATGGCAGATTGGAATGGTATGGTGAGCAAAAGCAATGGTTTTAGTGTTGGGGGTTCAAGTGAAGAGTTTGAAGAAGAAGAAGTGTGGGGTGTTGTGAAGGAAAGAAACTACTCCAACTCTAAGCAGGAGTCTTACTCCTCTGGTTCTTCTTCTGCATGGCGCCTCTCTACAGCTCCAAGAACCATCCCAAGGGCTAATAACAACACTCCAAGTACCCATGAAGCCAAAATGGTTCAGAAATCAGCTCCTCTCAACATCCCTGATTGGTCAAAGATCTATGGGAAAAGTTCTGGTGCTGCCAAGATTAATGGTTCATGGGTCAATAATGAAGATGATCATGTTGGACATGTCAATTCCAATGGTGATGATGATGAAAATGATGATGATGATGATATGGTGCCTCCGCATGAATGGATGGCCAGAAAGCTAGCAAGAAGCCAGATTTCATCTTTCTCAGTTTGTGAAGGGATTGGTAGGACACTCAAAGGAAGAGACCTCAGCAAAGGTTTGACCAAGAACCTCACCTGGGTTTACTGTTATGGGTCCATGCACCAAAAGTTGCATAACATTAACCTTCATTACAATTTACATGGTGGAGAAGCGTTTTTGCCAAAAGGACGGTTTAGTACTTTGGCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

213

Amino Acids

23.66

Weight (kDa)

6.06

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 168 1.4e-28 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 397
AciI CCGC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 214, 628
AfiI CCNNNNNNNGG 2 cut(s) 189, 526
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 2 cut(s) 57, 71
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 3 cut(s) 173, 245, 427
AluI AGCT 3 cut(s) 173, 245, 427
Alw26I GTCTC 1 cut(s) 486
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 296
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 543
AsuHPI GGTGA 3 cut(s) 34, 374, 514
AsuNHI GCTAGC 1 cut(s) 427
AvaII GGWCC 1 cut(s) 543
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 159, 397
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 191, 409
BciT130I CCWGG 1 cut(s) 526
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 3 cut(s) 161, 399, 544
BmrFI CCNGG 1 cut(s) 526
BmtI GCTAGC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 188, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 526
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 2 cut(s) 188, 525
BseGI GGATG 3 cut(s) 183, 255, 420
BseLI CCNNNNNNNGG 2 cut(s) 189, 526
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 468, 511
BseRI GAGGAG 2 cut(s) 127, 237
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 2 cut(s) 159, 397
BslI CCNNNNNNNGG 2 cut(s) 189, 526
BsmAI GTCTC 1 cut(s) 486
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 273, 334
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 467, 510
BspLI GGNNCC 3 cut(s) 161, 399, 544
BspOI GCTAGC 1 cut(s) 431
BspT107I GGYRCC 2 cut(s) 159, 397
BspTNI GGTCTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 188, 525
BssMI GATC 2 cut(s) 273, 334
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 2 cut(s) 536, 621
Bst6I CTCTTC 2 cut(s) 57, 484
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 3 cut(s) 120, 454, 497
BstF5I GGATG 3 cut(s) 183, 255, 420
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 276, 337
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 2 cut(s) 273, 334
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 3 cut(s) 183, 255, 420
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 543
Csp6I GTAC 2 cut(s) 213, 627
CviAII CATG 8 cut(s) 156, 218, 315, 338, 347, 407, 547, 590
CviJI RGCY 7 cut(s) 173, 194, 224, 245, 419, 427, 438
CviKI_1 RGCY 7 cut(s) 173, 194, 224, 245, 419, 427, 438
CviQI GTAC 2 cut(s) 213, 627
DdeI CTNAG 3 cut(s) 120, 454, 497
DinI GGCGCC 1 cut(s) 161
DpnI GATC 2 cut(s) 275, 336
DpnII GATC 2 cut(s) 273, 334
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 57, 484
EarI CTCTTC 2 cut(s) 57, 484
Eco130I CCWWGG 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 8 cut(s) 159, 221, 318, 341, 350, 410, 550, 593
FatI CATG 8 cut(s) 155, 217, 314, 337, 346, 406, 546, 589
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 3 cut(s) 170, 242, 427
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 419
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 8 cut(s) 159, 221, 318, 341, 350, 410, 550, 593
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 128
HphI GGTGA 3 cut(s) 34, 374, 514
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 3 cut(s) 91, 458, 584
HpyCH4III ACNGT 2 cut(s) 536, 621
HpyCH4V TGCA 3 cut(s) 155, 550, 562
HpyF3I CTNAG 3 cut(s) 120, 454, 497
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 8 cut(s) 159, 221, 318, 341, 350, 410, 550, 593
HspAI GCGC 1 cut(s) 160
KasI GGCGCC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 273, 334
LmnI GCTCC 2 cut(s) 178, 250
LpnPI CCDG 8 cut(s) 110, 126, 273, 276, 433, 452, 511, 538
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 428
MalI GATC 2 cut(s) 275, 336
MboI GATC 2 cut(s) 273, 334
MboII GAAGA 8 cut(s) 74, 83, 86, 89, 138, 141, 341, 501
MflI RGATCY 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 2 cut(s) 352, 583
MluNI TGGCCA 1 cut(s) 419
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 138, 322
MnlI CCTC 6 cut(s) 148, 173, 258, 411, 506, 530
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MseI TTAA 3 cut(s) 306, 570, 640
Msp20I TGGCCA 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 526
MvaI CCWGG 1 cut(s) 526
NarI GGCGCC 1 cut(s) 160
NdeII GATC 2 cut(s) 273, 334
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 8 cut(s) 159, 221, 318, 341, 350, 410, 550, 593
NlaIV GGNNCC 3 cut(s) 161, 399, 544
NspI RCATGY 1 cut(s) 350
PciI ACATGT 1 cut(s) 346
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 136
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 161, 399, 544
PspPI GGNCC 1 cut(s) 543
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 214, 628
RsaNI GTAC 2 cut(s) 213, 627
SaqAI TTAA 3 cut(s) 306, 570, 640
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 273, 334
Sau96I GGNCC 1 cut(s) 543
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 526
SetI ASST 8 cut(s) 175, 247, 429, 498, 508, 522, 527, 576
SfcI CTRYAG 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 1 cut(s) 543
Sse9I AATT 2 cut(s) 352, 583
SsiI CCGC 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 536, 621
TasI AATT 2 cut(s) 352, 583
TatI WGTACW 1 cut(s) 626
Tru1I TTAA 3 cut(s) 306, 570, 640
Tru9I TTAA 3 cut(s) 306, 570, 640
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 7 cut(s) 234, 303, 342, 387, 423, 435, 566
VpaK11BI GGWCC 1 cut(s) 543
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 1 cut(s) 350
XspI CTAG 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.